ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl43d12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 74 3e-10
2dbj|AP005560.3| Oryza sativa (japonica cultivar-group) genomic D... 74 3e-10
3dbj|AK099930.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 3e-10
4ref|XM_359978.1| Magnaporthe grisea 70-15 hypothetical protein (... 46 0.059
5gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 46 0.059
6ref|NM_196907.1| Oryza sativa (japonica cultivar-group) unknown ... 40 3.7
7gb|AC112160.3| Oryza sativa (japonica cultivar-group) chromosome... 40 3.7
8gb|AC136787.4| Oryza sativa (japonica cultivar-group) chromosome... 40 3.7
9gb|AY258009.2| Streptomyces clavuligerus clavulanic acid biosynt... 40 3.7
10gb|AC027038.12| Oryza sativa chromosome 10 BAC OSJNBa0071K18 gen... 40 3.7
11emb|BX572607.1| Rhodopseudomonas palustris CGA009 complete genom... 40 3.7
12emb|AL939120.1|SCO939120 Streptomyces coelicolor A3(2) complete ... 40 3.7
13gb|AY034175.1| Streptomyces clavuligerus clavulanic acid gene cl... 40 3.7
14dbj|AB125331.1| Dicologlossa cuneata mitochondrial cytb gene for... 40 3.7
15gb|CP000249.1| Frankia sp. CcI3, complete genome 40 3.7
16gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 3.7
17dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
18dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
19dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
20dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
21dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
22dbj|AP003946.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
23dbj|AP006056.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
24dbj|AK109163.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.7
25dbj|AK068341.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.7
26gb|AY105796.1| Zea mays PCO081368 mRNA sequence 40 3.7
27gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 3.7
28gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 3.7
29gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 3.7
30emb|AL731882.2|CNS08C8M Oryza sativa chromosome 12, . BAC OSJNBb... 40 3.7

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 55/61 (90%)
 Strand = Plus / Plus

                                                                           
Query: 156     cagcacgtcgtcaccgcgtccgccgccgacgtcgccatcctgatccacgacgccgccgcg 215
               ||||| ||||||||||| |||||||||||||| |||||||| ||||| |||||||| |||
Sbjct: 3065728 cagcatgtcgtcaccgcatccgccgccgacgtggccatcctcatccatgacgccgctgcg 3065787

                
Query: 216     g 216
               |
Sbjct: 3065788 g 3065788



 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                                 
Query: 64      ccatgaaaggccgcgcggttaagcttcgggaggcgcacaaggcgggctcg 113
               |||||||||| |||||||| ||||| || |||||||||||||| ||||||
Sbjct: 3065642 ccatgaaagggcgcgcggtgaagctccgagaggcgcacaaggccggctcg 3065691



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>dbj|AP005560.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1178_D01
          Length = 121768

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 55/61 (90%)
 Strand = Plus / Plus

                                                                         
Query: 156   cagcacgtcgtcaccgcgtccgccgccgacgtcgccatcctgatccacgacgccgccgcg 215
             ||||| ||||||||||| |||||||||||||| |||||||| ||||| |||||||| |||
Sbjct: 85694 cagcatgtcgtcaccgcatccgccgccgacgtggccatcctcatccatgacgccgctgcg 85753

              
Query: 216   g 216
             |
Sbjct: 85754 g 85754



 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                               
Query: 64    ccatgaaaggccgcgcggttaagcttcgggaggcgcacaaggcgggctcg 113
             |||||||||| |||||||| ||||| || |||||||||||||| ||||||
Sbjct: 85608 ccatgaaagggcgcgcggtgaagctccgagaggcgcacaaggccggctcg 85657



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>dbj|AK099930.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013118L18, full
            insert sequence
          Length = 3398

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 55/61 (90%)
 Strand = Plus / Minus

                                                                        
Query: 156  cagcacgtcgtcaccgcgtccgccgccgacgtcgccatcctgatccacgacgccgccgcg 215
            ||||| ||||||||||| |||||||||||||| |||||||| ||||| |||||||| |||
Sbjct: 2402 cagcatgtcgtcaccgcatccgccgccgacgtggccatcctcatccatgacgccgctgcg 2343

             
Query: 216  g 216
            |
Sbjct: 2342 g 2342



 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                              
Query: 64   ccatgaaaggccgcgcggttaagcttcgggaggcgcacaaggcgggctcg 113
            |||||||||| |||||||| ||||| || |||||||||||||| ||||||
Sbjct: 2488 ccatgaaagggcgcgcggtgaagctccgagaggcgcacaaggccggctcg 2439



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>ref|XM_359978.1| Magnaporthe grisea 70-15 hypothetical protein (MG05353.4) partial
            mRNA
          Length = 1587

 Score = 46.1 bits (23), Expect = 0.059
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                           
Query: 161  cgtcgtcaccgcgtccgccgccgacgtcgcc 191
            |||||||||| ||||||||||||||| ||||
Sbjct: 993  cgtcgtcacctcgtccgccgccgacgacgcc 1023



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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 46.1 bits (23), Expect = 0.059
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 169     ccgcgtccgccgccgacgtcgcc 191
               |||||||||||||||||||||||
Sbjct: 3002477 ccgcgtccgccgccgacgtcgcc 3002499



 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 172     cgtccgccgccgacgtcgcca 192
               |||||||||||||||||||||
Sbjct: 4873585 cgtccgccgccgacgtcgcca 4873605



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>ref|NM_196907.1| Oryza sativa (japonica cultivar-group) unknown protein
           (OSJNBa0071K18.4), mRNA
          Length = 783

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 197 gatccacgacgccgccgcgg 216
           ||||||||||||||||||||
Sbjct: 413 gatccacgacgccgccgcgg 432



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>gb|AC112160.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1579_G03,
             complete sequence
          Length = 121466

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 174   tccgccgccgacgtcgccat 193
             ||||||||||||||||||||
Sbjct: 39347 tccgccgccgacgtcgccat 39328



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>gb|AC136787.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0052B22,
              complete sequence
          Length = 156725

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 175    ccgccgccgacgtcgccatc 194
              ||||||||||||||||||||
Sbjct: 101834 ccgccgccgacgtcgccatc 101853



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>gb|AY258009.2| Streptomyces clavuligerus clavulanic acid biosynthetic gene cluster,
            partial sequence
          Length = 13901

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 164  cgtcaccgcgtccgccgccg 183
            ||||||||||||||||||||
Sbjct: 6647 cgtcaccgcgtccgccgccg 6666



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>gb|AC027038.12| Oryza sativa chromosome 10 BAC OSJNBa0071K18 genomic sequence, complete
             sequence
          Length = 149758

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 197   gatccacgacgccgccgcgg 216
             ||||||||||||||||||||
Sbjct: 42115 gatccacgacgccgccgcgg 42134



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>emb|BX572607.1| Rhodopseudomonas palustris CGA009 complete genome; segment 15/16
          Length = 345012

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 169    ccgcgtccgccgccgacgtcgcca 192
              ||||| ||||||||||||||||||
Sbjct: 173940 ccgcggccgccgccgacgtcgcca 173963



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>emb|AL939120.1|SCO939120 Streptomyces coelicolor A3(2) complete genome; segment 17/29
          Length = 248550

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 248   ggccgtcgccacgatccggc 267
             ||||||||||||||||||||
Sbjct: 90760 ggccgtcgccacgatccggc 90779



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>gb|AY034175.1| Streptomyces clavuligerus clavulanic acid gene cluster, partial
            sequence
          Length = 12162

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 164  cgtcaccgcgtccgccgccg 183
            ||||||||||||||||||||
Sbjct: 8154 cgtcaccgcgtccgccgccg 8173



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>dbj|AB125331.1| Dicologlossa cuneata mitochondrial cytb gene for cytochrome b,
            complete cds
          Length = 1141

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 179  cgccgacgtcgccatcctga 198
            ||||||||||||||||||||
Sbjct: 987  cgccgacgtcgccatcctga 1006



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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 173     gtccgccgccgacgtcgcca 192
               ||||||||||||||||||||
Sbjct: 2558529 gtccgccgccgacgtcgcca 2558510



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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 169     ccgcgtccgccgccgacgtcgcca 192
               ||||| ||||||||||||||||||
Sbjct: 1228379 ccgcgaccgccgccgacgtcgcca 1228356



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 173     gtccgccgccgacgtcgcca 192
               ||||||||||||||||||||
Sbjct: 4041971 gtccgccgccgacgtcgcca 4041952



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 175      ccgccgccgacgtcgccatc 194
                ||||||||||||||||||||
Sbjct: 16786272 ccgccgccgacgtcgccatc 16786291



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 197      gatccacgacgccgccgcgg 216
                ||||||||||||||||||||
Sbjct: 16618127 gatccacgacgccgccgcgg 16618108



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 175     ccgccgccgacgtcgccatc 194
               ||||||||||||||||||||
Sbjct: 5117204 ccgccgccgacgtcgccatc 5117223



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 174      tccgccgccgacgtcgccat 193
                ||||||||||||||||||||
Sbjct: 24153109 tccgccgccgacgtcgccat 24153090



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>dbj|AP003946.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OJ1147_D11
          Length = 138444

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 175   ccgccgccgacgtcgccatc 194
             ||||||||||||||||||||
Sbjct: 76242 ccgccgccgacgtcgccatc 76261



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>dbj|AP006056.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:B1172G12
          Length = 171974

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 175    ccgccgccgacgtcgccatc 194
              ||||||||||||||||||||
Sbjct: 159318 ccgccgccgacgtcgccatc 159337



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>dbj|AK109163.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-155-G10, full
           insert sequence
          Length = 769

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 175 ccgccgccgacgtcgccatc 194
           ||||||||||||||||||||
Sbjct: 223 ccgccgccgacgtcgccatc 242



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>dbj|AK068341.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013149K10, full
           insert sequence
          Length = 2132

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 175 ccgccgccgacgtcgccatc 194
           ||||||||||||||||||||
Sbjct: 38  ccgccgccgacgtcgccatc 57



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>gb|AY105796.1| Zea mays PCO081368 mRNA sequence
          Length = 544

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 96  gcgcacaaggcgggctcgggctcc 119
           ||||||||||||| ||||||||||
Sbjct: 86  gcgcacaaggcggcctcgggctcc 109



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 197      gatccacgacgccgccgcgg 216
                ||||||||||||||||||||
Sbjct: 16626368 gatccacgacgccgccgcgg 16626349



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 175      ccgccgccgacgtcgccatc 194
                ||||||||||||||||||||
Sbjct: 16880042 ccgccgccgacgtcgccatc 16880061



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 173     gtccgccgccgacgtcgcca 192
               ||||||||||||||||||||
Sbjct: 4041958 gtccgccgccgacgtcgcca 4041939



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>emb|AL731882.2|CNS08C8M Oryza sativa chromosome 12, . BAC OSJNBb0028H07 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 132682

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 173   gtccgccgccgacgtcgcca 192
             ||||||||||||||||||||
Sbjct: 78392 gtccgccgccgacgtcgcca 78373


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,537,512
Number of Sequences: 3902068
Number of extensions: 1537512
Number of successful extensions: 37661
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36790
Number of HSP's gapped (non-prelim): 871
length of query: 280
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 258
effective length of database: 17,147,199,772
effective search space: 4423977541176
effective search space used: 4423977541176
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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