Clone Information

BLAST Search Result

Clone Name	bastl44c11
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|NM_191586.2\| Oryza sativa (japonica cultivar-group), mRNA	464	e-127
2	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	464	e-127
3	dbj\|AP003215.3\| Oryza sativa (japonica cultivar-group) genomic D...	464	e-127
4	dbj\|AK121690.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	464	e-127
5	emb\|AJ535079.1\|OSA535079 Oryza sativa (japonica cultivar-group) ...	464	e-127
6	gb\|AF532601.1\| Triticum aestivum multidrug resistance associated...	391	e-105
7	ref\|NM_100293.2\| Arabidopsis thaliana ATMRP5 AT1G04120 (ATMRP5) ...	54	4e-04
8	emb\|Y11250.1\|ATMRPPROT Arabidopsis thaliana mRNA for putative MR...	54	4e-04
9	gb\|AF225908.1\|AF225908 Arabidopsis thaliana sulfonylurea recepto...	54	4e-04
10	gb\|AC002411.1\|F20D22 Arabidopsis thaliana chromosome 1 BAC F20D2...	54	4e-04
11	ref\|NM_112148.3\| Arabidopsis thaliana ATMRP8 AT3G13090 (ATMRP8) ...	52	0.002
12	gb\|AY052368.1\| Arabidopsis thaliana ATP-binding cassette transpo...	52	0.002
13	dbj\|AP000375.1\| Arabidopsis thaliana genomic DNA, chromosome 3, ...	52	0.002
14	dbj\|AB162907.1\| Thlaspi caerulescens TcMRP3 mRNA for multidrug r...	48	0.025
15	gb\|BT009567.1\| Triticum aestivum clone wre1n.pk0015.d11:fis, ful...	46	0.098
16	gb\|AF109719.2\|MMHC188A7 Mus musculus casein kinase 2 beta subuni...	44	0.39
17	emb\|CR974444.18\| Mouse DNA sequence from clone RP23-115O3 on chr...	44	0.39
18	dbj\|AB036423.1\| Mus musculus iba1 gene for ionized calcium bindi...	44	0.39
19	gb\|AC167137.7\| Mus musculus chromosome 1, clone RP23-408P8, comp...	42	1.5
20	gb\|AC138399.18\| Mus musculus chromosome 1, clone RP23-113N18, co...	42	1.5
21	ref\|NM_142581.1\| Drosophila melanogaster CG4562-RA (CG4562), mRNA	42	1.5
22	gb\|AC007711.9\|AC007711 Drosophila melanogaster, chromosome 3R, r...	42	1.5
23	gb\|BT021352.1\| Drosophila melanogaster LP18549 full insert cDNA	42	1.5
24	gb\|AE003728.3\| Drosophila melanogaster chromosome 3R, section 66...	42	1.5
25	ref\|XM_465011.1\| Oryza sativa (japonica cultivar-group), mRNA	40	6.0
26	gb\|AC113989.6\| Mus musculus chromosome 3, clone RP24-130I14, com...	40	6.0
27	gb\|AC164405.4\| Mus musculus chromosome 3, clone RP24-286C1, comp...	40	6.0
28	gb\|AC125096.3\| Mus musculus BAC clone RP24-181K19 from chromosom...	40	6.0
29	emb\|AL354996.9\| Human DNA sequence from clone RP11-478H12 on chr...	40	6.0
30	emb\|AL162724.16\| Human DNA sequence from clone RP11-121A14 on ch...	40	6.0
31	emb\|AL079340.7\|HSJ760G15 Human DNA sequence from clone RP4-760G1...	40	6.0
32	gb\|AY129950.1\| Homo sapiens cAMP-specific phosphodiesterase 8B (...	40	6.0
33	gb\|AC090007.8\| Mus Musculus Strain C57BL6/J chromosome 8 BAC, RP...	40	6.0
34	gb\|AC109466.2\| Homo sapiens chromosome 5 clone RP11-308N24, comp...	40	6.0
35	gb\|AC022422.5\| Homo sapiens chromosome 5 clone CTD-2199L4, compl...	40	6.0
36	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.0
37	gb\|AC129572.6\| Mus musculus chromosome 5, clone RP23-452L7, comp...	40	6.0
38	dbj\|AP004168.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.0
39	gb\|AC113018.7\| Mus musculus chromosome 5, clone RP23-183C18, com...	40	6.0
40	emb\|AJ535078.1\|OSA535078 Oryza sativa (japonica cultivar-group) ...	40	6.0
41	gb\|CP000102.1\| Methanosphaera stadtmanae DSM 3091, complete genome	40	6.0

>ref|NM_191586.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 5018

 Score =  464 bits (234), Expect = e-127
 Identities = 386/437 (88%)
 Strand = Plus / Plus

                                                                        
Query: 5    gggataccattggagtcagggaaggtgctgtctgcattggccacattccgggtgcttcaa 64
            ||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||| |||
Sbjct: 1735 gggataccattggagtcagggaaggtgctatctgcactggccacattccgcgtgctgcaa 1794

                                                                        
Query: 65   gaaccaatatacaaccttcctgacacaatctcaatgatgattcagaccaaggtgtctctt 124
            ||||| |||||||| ||||| ||||| ||||||||| |||||||||||||||||||||||
Sbjct: 1795 gaaccgatatacaatcttcccgacacgatctcaatgttgattcagaccaaggtgtctctt 1854

                                                                        
Query: 125  gacaggatagcatctttcctatgccttgaggagttgccgacggatgctgtggacaggcta 184
            |||||||||||||| ||  ||||||| ||||| |||||||| |||||||||   |  || 
Sbjct: 1855 gacaggatagcatcctttttatgcctcgaggaattgccgactgatgctgtgctgaaactt 1914

                                                                        
Query: 185  ccaagtggtagctctaatgttgcaattgaggtcagcaatgggtgcttctcctgggacggc 244
            ||||||||||||||  ||||||||||||||||||| ||||||||||| || ||||| | |
Sbjct: 1915 ccaagtggtagctcagatgttgcaattgaggtcagaaatgggtgcttttcttgggatgcc 1974

                                                                        
Query: 245  tcacctgagctgccaacgctgaaggacctgaattttcaagctcagcaaggcatgcgtgtt 304
            ||||||||  |||||||| ||||||| ||||| ||||||||||| ||||| |||||| ||
Sbjct: 1975 tcacctgaagtgccaacgttgaaggatctgaactttcaagctcaacaaggtatgcgtatt 2034

                                                                        
Query: 305  gcagtctgtgggacggtaggctctggaaaatcaagcttgctctcttgcattcttggtgag 364
            |||||||||||||| || ||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 2035 gcagtctgtgggactgtcggctctggaaaatcaagcttgttgtcttgcattcttggtgag 2094

                                                                        
Query: 365  gtgccaaagctatcaggagaggtcaagacttgcggaacaatggcatatgtcagccagacn 424
             | |||||||||||||||||||||||||| || || || ||||| ||||| |||||| | 
Sbjct: 2095 attccaaagctatcaggagaggtcaagacctgtgggacgatggcgtatgtgagccagtcg 2154

                             
Query: 425  gcatggatacagagtgg 441
            || ||||||||||||||
Sbjct: 2155 gcgtggatacagagtgg 2171

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  464 bits (234), Expect = e-127
 Identities = 386/437 (88%)
 Strand = Plus / Plus

                                                                           
Query: 5       gggataccattggagtcagggaaggtgctgtctgcattggccacattccgggtgcttcaa 64
               ||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||| |||
Sbjct: 3805405 gggataccattggagtcagggaaggtgctatctgcactggccacattccgcgtgctgcaa 3805464

                                                                           
Query: 65      gaaccaatatacaaccttcctgacacaatctcaatgatgattcagaccaaggtgtctctt 124
               ||||| |||||||| ||||| ||||| ||||||||| |||||||||||||||||||||||
Sbjct: 3805465 gaaccgatatacaatcttcccgacacgatctcaatgttgattcagaccaaggtgtctctt 3805524

                                                                           
Query: 125     gacaggatagcatctttcctatgccttgaggagttgccgacggatgctgtggacaggcta 184
               |||||||||||||| ||  ||||||| ||||| |||||||| |||||||||   |  || 
Sbjct: 3805525 gacaggatagcatcctttttatgcctcgaggaattgccgactgatgctgtgctgaaactt 3805584

                                                                           
Query: 185     ccaagtggtagctctaatgttgcaattgaggtcagcaatgggtgcttctcctgggacggc 244
               ||||||||||||||  ||||||||||||||||||| ||||||||||| || ||||| | |
Sbjct: 3805585 ccaagtggtagctcagatgttgcaattgaggtcagaaatgggtgcttttcttgggatgcc 3805644

                                                                           
Query: 245     tcacctgagctgccaacgctgaaggacctgaattttcaagctcagcaaggcatgcgtgtt 304
               ||||||||  |||||||| ||||||| ||||| ||||||||||| ||||| |||||| ||
Sbjct: 3805645 tcacctgaagtgccaacgttgaaggatctgaactttcaagctcaacaaggtatgcgtatt 3805704

                                                                           
Query: 305     gcagtctgtgggacggtaggctctggaaaatcaagcttgctctcttgcattcttggtgag 364
               |||||||||||||| || ||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 3805705 gcagtctgtgggactgtcggctctggaaaatcaagcttgttgtcttgcattcttggtgag 3805764

                                                                           
Query: 365     gtgccaaagctatcaggagaggtcaagacttgcggaacaatggcatatgtcagccagacn 424
                | |||||||||||||||||||||||||| || || || ||||| ||||| |||||| | 
Sbjct: 3805765 attccaaagctatcaggagaggtcaagacctgtgggacgatggcgtatgtgagccagtcg 3805824

                                
Query: 425     gcatggatacagagtgg 441
               || ||||||||||||||
Sbjct: 3805825 gcgtggatacagagtgg 3805841

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>dbj|AP003215.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0089K24
          Length = 154137

 Score =  464 bits (234), Expect = e-127
 Identities = 386/437 (88%)
 Strand = Plus / Plus

                                                                         
Query: 5     gggataccattggagtcagggaaggtgctgtctgcattggccacattccgggtgcttcaa 64
             ||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||| |||
Sbjct: 78947 gggataccattggagtcagggaaggtgctatctgcactggccacattccgcgtgctgcaa 79006

                                                                         
Query: 65    gaaccaatatacaaccttcctgacacaatctcaatgatgattcagaccaaggtgtctctt 124
             ||||| |||||||| ||||| ||||| ||||||||| |||||||||||||||||||||||
Sbjct: 79007 gaaccgatatacaatcttcccgacacgatctcaatgttgattcagaccaaggtgtctctt 79066

                                                                         
Query: 125   gacaggatagcatctttcctatgccttgaggagttgccgacggatgctgtggacaggcta 184
             |||||||||||||| ||  ||||||| ||||| |||||||| |||||||||   |  || 
Sbjct: 79067 gacaggatagcatcctttttatgcctcgaggaattgccgactgatgctgtgctgaaactt 79126

                                                                         
Query: 185   ccaagtggtagctctaatgttgcaattgaggtcagcaatgggtgcttctcctgggacggc 244
             ||||||||||||||  ||||||||||||||||||| ||||||||||| || ||||| | |
Sbjct: 79127 ccaagtggtagctcagatgttgcaattgaggtcagaaatgggtgcttttcttgggatgcc 79186

                                                                         
Query: 245   tcacctgagctgccaacgctgaaggacctgaattttcaagctcagcaaggcatgcgtgtt 304
             ||||||||  |||||||| ||||||| ||||| ||||||||||| ||||| |||||| ||
Sbjct: 79187 tcacctgaagtgccaacgttgaaggatctgaactttcaagctcaacaaggtatgcgtatt 79246

                                                                         
Query: 305   gcagtctgtgggacggtaggctctggaaaatcaagcttgctctcttgcattcttggtgag 364
             |||||||||||||| || ||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 79247 gcagtctgtgggactgtcggctctggaaaatcaagcttgttgtcttgcattcttggtgag 79306

                                                                         
Query: 365   gtgccaaagctatcaggagaggtcaagacttgcggaacaatggcatatgtcagccagacn 424
              | |||||||||||||||||||||||||| || || || ||||| ||||| |||||| | 
Sbjct: 79307 attccaaagctatcaggagaggtcaagacctgtgggacgatggcgtatgtgagccagtcg 79366

                              
Query: 425   gcatggatacagagtgg 441
             || ||||||||||||||
Sbjct: 79367 gcgtggatacagagtgg 79383

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>dbj|AK121690.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033071F24, full
            insert sequence
          Length = 5017

 Score =  464 bits (234), Expect = e-127
 Identities = 386/437 (88%)
 Strand = Plus / Plus

                                                                        
Query: 5    gggataccattggagtcagggaaggtgctgtctgcattggccacattccgggtgcttcaa 64
            ||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||| |||
Sbjct: 1735 gggataccattggagtcagggaaggtgctatctgcactggccacattccgcgtgctgcaa 1794

                                                                        
Query: 65   gaaccaatatacaaccttcctgacacaatctcaatgatgattcagaccaaggtgtctctt 124
            ||||| |||||||| ||||| ||||| ||||||||| |||||||||||||||||||||||
Sbjct: 1795 gaaccgatatacaatcttcccgacacgatctcaatgttgattcagaccaaggtgtctctt 1854

                                                                        
Query: 125  gacaggatagcatctttcctatgccttgaggagttgccgacggatgctgtggacaggcta 184
            |||||||||||||| ||  ||||||| ||||| |||||||| |||||||||   |  || 
Sbjct: 1855 gacaggatagcatcctttttatgcctcgaggaattgccgactgatgctgtgctgaaactt 1914

                                                                        
Query: 185  ccaagtggtagctctaatgttgcaattgaggtcagcaatgggtgcttctcctgggacggc 244
            ||||||||||||||  ||||||||||||||||||| ||||||||||| || ||||| | |
Sbjct: 1915 ccaagtggtagctcagatgttgcaattgaggtcagaaatgggtgcttttcttgggatgcc 1974

                                                                        
Query: 245  tcacctgagctgccaacgctgaaggacctgaattttcaagctcagcaaggcatgcgtgtt 304
            ||||||||  |||||||| ||||||| ||||| ||||||||||| ||||| |||||| ||
Sbjct: 1975 tcacctgaagtgccaacgttgaaggatctgaactttcaagctcaacaaggtatgcgtatt 2034

                                                                        
Query: 305  gcagtctgtgggacggtaggctctggaaaatcaagcttgctctcttgcattcttggtgag 364
            |||||||||||||| || ||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 2035 gcagtctgtgggactgtcggctctggaaaatcaagcttgttgtcttgcattcttggtgag 2094

                                                                        
Query: 365  gtgccaaagctatcaggagaggtcaagacttgcggaacaatggcatatgtcagccagacn 424
             | |||||||||||||||||||||||||| || || || ||||| ||||| |||||| | 
Sbjct: 2095 attccaaagctatcaggagaggtcaagacctgtgggacgatggcgtatgtgagccagtcg 2154

                             
Query: 425  gcatggatacagagtgg 441
            || ||||||||||||||
Sbjct: 2155 gcgtggatacagagtgg 2171

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>emb|AJ535079.1|OSA535079 Oryza sativa (japonica cultivar-group) mrp3 gene for MRP-like ABC
            transporter, exons 1-10
          Length = 5514

 Score =  464 bits (234), Expect = e-127
 Identities = 386/437 (88%)
 Strand = Plus / Plus

                                                                        
Query: 5    gggataccattggagtcagggaaggtgctgtctgcattggccacattccgggtgcttcaa 64
            ||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||| |||
Sbjct: 1666 gggataccattggagtcagggaaggtgctatctgcactggccacattccgcgtgctgcaa 1725

                                                                        
Query: 65   gaaccaatatacaaccttcctgacacaatctcaatgatgattcagaccaaggtgtctctt 124
            ||||| |||||||| ||||| ||||| ||||||||| |||||||||||||||||||||||
Sbjct: 1726 gaaccgatatacaatcttcccgacacgatctcaatgttgattcagaccaaggtgtctctt 1785

                                                                        
Query: 125  gacaggatagcatctttcctatgccttgaggagttgccgacggatgctgtggacaggcta 184
            |||||||||||||| ||  ||||||| ||||| |||||||| |||||||||   |  || 
Sbjct: 1786 gacaggatagcatcctttttatgcctcgaggaattgccgactgatgctgtgctgaaactt 1845

                                                                        
Query: 185  ccaagtggtagctctaatgttgcaattgaggtcagcaatgggtgcttctcctgggacggc 244
            ||||||||||||||  ||||||||||||||||||| ||||||||||| || ||||| | |
Sbjct: 1846 ccaagtggtagctcagatgttgcaattgaggtcagaaatgggtgcttttcttgggatgcc 1905

                                                                        
Query: 245  tcacctgagctgccaacgctgaaggacctgaattttcaagctcagcaaggcatgcgtgtt 304
            ||||||||  |||||||| ||||||| ||||| ||||||||||| ||||| |||||| ||
Sbjct: 1906 tcacctgaagtgccaacgttgaaggatctgaactttcaagctcaacaaggtatgcgtatt 1965

                                                                        
Query: 305  gcagtctgtgggacggtaggctctggaaaatcaagcttgctctcttgcattcttggtgag 364
            |||||||||||||| || ||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 1966 gcagtctgtgggactgtcggctctggaaaatcaagcttgttgtcttgcattcttggtgag 2025

                                                                        
Query: 365  gtgccaaagctatcaggagaggtcaagacttgcggaacaatggcatatgtcagccagacn 424
             | |||||||||||||||||||||||||| || || || ||||| ||||| |||||| | 
Sbjct: 2026 attccaaagctatcaggagaggtcaagacctgtgggacgatggcgtatgtgagccagtcg 2085

                             
Query: 425  gcatggatacagagtgg 441
            || ||||||||||||||
Sbjct: 2086 gcgtggatacagagtgg 2102

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>gb|AF532601.1| Triticum aestivum multidrug resistance associated protein MRP2 mRNA,
            complete cds
          Length = 4857

 Score =  391 bits (197), Expect = e-105
 Identities = 379/440 (86%)
 Strand = Plus / Plus

                                                                        
Query: 5    gggataccattggagtcagggaaggtgctgtctgcattggccacattccgggtgcttcaa 64
            ||||||||||||||||| || |||||||||||||| ||||||||  |||||||||| || 
Sbjct: 1885 gggataccattggagtcgggcaaggtgctgtctgcgttggccacgctccgggtgctgcag 1944

                                                                        
Query: 65   gaaccaatatacaaccttcctgacacaatctcaatgatgattcagaccaaggtgtctctt 124
            ||| | |||||||||||||| ||||  |||||    || || ||||||||||||||||||
Sbjct: 1945 gaatcgatatacaaccttccggacaggatctcggccatcatccagaccaaggtgtctctt 2004

                                                                        
Query: 125  gacaggatagcatctttcctatgccttgaggagttgccgacggatgctgtggacaggcta 184
            |||||||||||||| ||||||||||| |||||||| |||||||| || ||| | ||||| 
Sbjct: 2005 gacaggatagcatccttcctatgcctcgaggagttcccgacggacgccgtgcagaggctg 2064

                                                                        
Query: 185  ccaagtggtagctctaatgttgcaattgaggtcagcaatgggtgcttctcctgggacggc 244
            ||||  || |||||  |||||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 2065 ccaatcggcagctcagatgttgcaatcgaggtcagcaatgggtgcttctcctgggacgcc 2124

                                                                        
Query: 245  tcacctgagctgccaacgctgaaggacctgaattttcaagctcagcaaggcatgcgtgtt 304
            || |||||  |||||||||| |||||||| || |||||||||| || |||||||||||||
Sbjct: 2125 tcgcctgaaatgccaacgctcaaggacctcaactttcaagctcggcgaggcatgcgtgtt 2184

                                                                        
Query: 305  gcagtctgtgggacggtaggctctggaaaatcaagcttgctctcttgcattcttggtgag 364
            |||||||| |||||||| ||||| || ||||| ||| ||||||||||||||||||| |||
Sbjct: 2185 gcagtctgcgggacggtcggctccgggaaatcgagcctgctctcttgcattcttggcgag 2244

                                                                        
Query: 365  gtgccaaagctatcaggagaggtcaagacttgcggaacaatggcatatgtcagccagacn 424
            || || ||||||||||||| |||||||||||| || ||| | || ||||| |||||| | 
Sbjct: 2245 gttccgaagctatcaggagtggtcaagacttgtgggacagtagcctatgtgagccagtca 2304

                                
Query: 425  gcatggatacagagtggcaa 444
            || ||||||||||| |||||
Sbjct: 2305 gcgtggatacagagcggcaa 2324

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>ref|NM_100293.2| Arabidopsis thaliana ATMRP5 AT1G04120 (ATMRP5) mRNA, complete cds
          Length = 5277

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 51/59 (86%)
 Strand = Plus / Plus

                                                                       
Query: 296  atgcgtgttgcagtctgtgggacggtaggctctggaaaatcaagcttgctctcttgcat 354
            |||||||| || |||||||| || || ||||||||||||||||| ||  ||||||||||
Sbjct: 2289 atgcgtgtggctgtctgtggcacagttggctctggaaaatcaagttttatctcttgcat 2347

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>emb|Y11250.1|ATMRPPROT Arabidopsis thaliana mRNA for putative MRP protein
          Length = 4992

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 51/59 (86%)
 Strand = Plus / Plus

                                                                       
Query: 296  atgcgtgttgcagtctgtgggacggtaggctctggaaaatcaagcttgctctcttgcat 354
            |||||||| || |||||||| || || ||||||||||||||||| ||  ||||||||||
Sbjct: 2157 atgcgtgtggctgtctgtggcacagttggctctggaaaatcaagttttatctcttgcat 2215

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>gb|AF225908.1|AF225908 Arabidopsis thaliana sulfonylurea receptor-like protein mRNA,
            complete cds
          Length = 5012

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 51/59 (86%)
 Strand = Plus / Plus

                                                                       
Query: 296  atgcgtgttgcagtctgtgggacggtaggctctggaaaatcaagcttgctctcttgcat 354
            |||||||| || |||||||| || || ||||||||||||||||| ||  ||||||||||
Sbjct: 2177 atgcgtgtggctgtctgtggcacagttggctctggaaaatcaagttttatctcttgcat 2235

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>gb|AC002411.1|F20D22 Arabidopsis thaliana chromosome 1 BAC F20D22 sequence, complete
             sequence
          Length = 78259

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 51/59 (86%)
 Strand = Plus / Plus

                                                                        
Query: 296   atgcgtgttgcagtctgtgggacggtaggctctggaaaatcaagcttgctctcttgcat 354
             |||||||| || |||||||| || || ||||||||||||||||| ||  ||||||||||
Sbjct: 57431 atgcgtgtggctgtctgtggcacagttggctctggaaaatcaagttttatctcttgcat 57489

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>ref|NM_112148.3| Arabidopsis thaliana ATMRP8 AT3G13090 (ATMRP8) mRNA, complete cds
          Length = 4401

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 62/74 (83%)
 Strand = Plus / Plus

                                                                        
Query: 68   ccaatatacaaccttcctgacacaatctcaatgatgattcagaccaaggtgtctcttgac 127
            ||||| ||||| ||||| || ||||||||||||||  |||| || ||||| |||||| | 
Sbjct: 1660 ccaatctacaaacttcccgaaacaatctcaatgattgttcaaactaaggtatctcttaat 1719

                          
Query: 128  aggatagcatcttt 141
            ||||| ||||||||
Sbjct: 1720 aggattgcatcttt 1733

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>gb|AY052368.1| Arabidopsis thaliana ATP-binding cassette transporter MRP6 mRNA,
            complete cds
          Length = 4401

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 62/74 (83%)
 Strand = Plus / Plus

                                                                        
Query: 68   ccaatatacaaccttcctgacacaatctcaatgatgattcagaccaaggtgtctcttgac 127
            ||||| ||||| ||||| || ||||||||||||||  |||| || ||||| |||||| | 
Sbjct: 1660 ccaatctacaaacttcccgaaacaatctcaatgattgttcaaactaaggtatctcttaat 1719

                          
Query: 128  aggatagcatcttt 141
            ||||| ||||||||
Sbjct: 1720 aggattgcatcttt 1733

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>dbj|AP000375.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MJG19
          Length = 62948

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 62/74 (83%)
 Strand = Plus / Minus

                                                                         
Query: 68    ccaatatacaaccttcctgacacaatctcaatgatgattcagaccaaggtgtctcttgac 127
             ||||| ||||| ||||| || ||||||||||||||  |||| || ||||| |||||| | 
Sbjct: 15878 ccaatctacaaacttcccgaaacaatctcaatgattgttcaaactaaggtatctcttaat 15819

                           
Query: 128   aggatagcatcttt 141
             ||||| ||||||||
Sbjct: 15818 aggattgcatcttt 15805

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>dbj|AB162907.1| Thlaspi caerulescens TcMRP3 mRNA for multidrug resistance-associated
            protein, complete cds
          Length = 4602

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                        
Query: 302  gttgcagtctgtgggacggtaggctctggaaaatcaagcttgct 345
            |||||||| ||||| || || |||||||| ||||||||||||||
Sbjct: 2023 gttgcagtttgtggtactgttggctctggtaaatcaagcttgct 2066

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>gb|BT009567.1| Triticum aestivum clone wre1n.pk0015.d11:fis, full insert mRNA
           sequence
          Length = 1069

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 77/95 (81%)
 Strand = Plus / Minus

                                                                       
Query: 302 gttgcagtctgtgggacggtaggctctggaaaatcaagcttgctctcttgcattcttggt 361
           ||||| |||||||| || || || ||||| |||||||| ||  | |||||||| || |||
Sbjct: 275 gttgctgtctgtggaacagttggatctggcaaatcaagtttattgtcttgcatactcggt 216

                                              
Query: 362 gaggtgccaaagctatcaggagaggtcaagacttg 396
           ||| | |||||  ||||||||||||| || |||||
Sbjct: 215 gagataccaaaattatcaggagaggttaaaacttg 181

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>gb|AF109719.2|MMHC188A7 Mus musculus casein kinase 2 beta subunit (gMCK2) gene, partial cds;
             BAT4, NG20 (NG20), BAT3, BAT2, AIF-1, B144, lymphotoxin
             beta, TNF, and TNF beta genes, complete cds; IKBL gene,
             partial cds; and unknown gene
          Length = 120990

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 15    tggagtcagggaaggtgctgtc 36
             ||||||||||||||||||||||
Sbjct: 63863 tggagtcagggaaggtgctgtc 63884

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>emb|CR974444.18| Mouse DNA sequence from clone RP23-115O3 on chromosome 17, complete
              sequence
          Length = 190041

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 15     tggagtcagggaaggtgctgtc 36
              ||||||||||||||||||||||
Sbjct: 111708 tggagtcagggaaggtgctgtc 111729

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>dbj|AB036423.1| Mus musculus iba1 gene for ionized calcium binding adapter molecule
           1, complete cds
          Length = 5549

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 15  tggagtcagggaaggtgctgtc 36
           ||||||||||||||||||||||
Sbjct: 689 tggagtcagggaaggtgctgtc 668

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>gb|AC167137.7| Mus musculus chromosome 1, clone RP23-408P8, complete sequence
          Length = 184702

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 339  gcttgctctcttgcattcttg 359
            |||||||||||||||||||||
Sbjct: 5283 gcttgctctcttgcattcttg 5263

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>gb|AC138399.18| Mus musculus chromosome 1, clone RP23-113N18, complete sequence
          Length = 219810

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 339    gcttgctctcttgcattcttg 359
              |||||||||||||||||||||
Sbjct: 123274 gcttgctctcttgcattcttg 123294

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>ref|NM_142581.1| Drosophila melanogaster CG4562-RA (CG4562), mRNA
          Length = 4229

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 323  ggctctggaaaatcaagcttg 343
            |||||||||||||||||||||
Sbjct: 1581 ggctctggaaaatcaagcttg 1601

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>gb|AC007711.9|AC007711 Drosophila melanogaster, chromosome 3R, region 92B-92B, BAC clone
             BACR02O09, complete sequence
          Length = 155751

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 323   ggctctggaaaatcaagcttg 343
             |||||||||||||||||||||
Sbjct: 85525 ggctctggaaaatcaagcttg 85505

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>gb|BT021352.1| Drosophila melanogaster LP18549 full insert cDNA
          Length = 4538

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 323  ggctctggaaaatcaagcttg 343
            |||||||||||||||||||||
Sbjct: 1584 ggctctggaaaatcaagcttg 1604

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>gb|AE003728.3| Drosophila melanogaster chromosome 3R, section 66 of 118 of the
             complete sequence
          Length = 232094

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 323   ggctctggaaaatcaagcttg 343
             |||||||||||||||||||||
Sbjct: 32272 ggctctggaaaatcaagcttg 32252

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>ref|XM_465011.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3945

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 62/76 (81%)
 Strand = Plus / Plus

                                                                        
Query: 309  tctgtgggacggtaggctctggaaaatcaagcttgctctcttgcattcttggtgaggtgc 368
            ||||||| || || || |||||||||||||| ||| | || ||||| || |||||| | |
Sbjct: 1718 tctgtggaactgttggatctggaaaatcaagtttgttgtcatgcatactcggtgagatac 1777

                            
Query: 369  caaagctatcaggaga 384
            ||| | ||||||||||
Sbjct: 1778 caaggttatcaggaga 1793

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>gb|AC113989.6| Mus musculus chromosome 3, clone RP24-130I14, complete sequence
          Length = 159841

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 340    cttgctctcttgcattcttg 359
              ||||||||||||||||||||
Sbjct: 158286 cttgctctcttgcattcttg 158267



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 340    cttgctctcttgcattcttg 359
              ||||||||||||||||||||
Sbjct: 155667 cttgctctcttgcattcttg 155648

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>gb|AC164405.4| Mus musculus chromosome 3, clone RP24-286C1, complete sequence
          Length = 159535

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 340   cttgctctcttgcattcttg 359
             ||||||||||||||||||||
Sbjct: 27569 cttgctctcttgcattcttg 27550



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 340   cttgctctcttgcattcttg 359
             ||||||||||||||||||||
Sbjct: 24950 cttgctctcttgcattcttg 24931

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>gb|AC125096.3| Mus musculus BAC clone RP24-181K19 from chromosome 18, complete
             sequence
          Length = 154941

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 254   ctgccaacgctgaaggacctgaat 277
             ||||||| ||||||||||||||||
Sbjct: 62774 ctgccaaagctgaaggacctgaat 62797

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>emb|AL354996.9| Human DNA sequence from clone RP11-478H12 on chromosome 13, complete
            sequence
          Length = 54981

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 324  gctctggaaaatcaagcttgctct 347
            ||||||||||||||| ||||||||
Sbjct: 1144 gctctggaaaatcaaccttgctct 1121

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>emb|AL162724.16| Human DNA sequence from clone RP11-121A14 on chromosome 9 Contains the 5'
              end of the NEK6 gene for NIMA (never in mitosis gene
              a)-related kinase 6, two novel genes and a CpG island,
              complete sequence
          Length = 122542

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 234    cctgggacggctcacctgag 253
              ||||||||||||||||||||
Sbjct: 121291 cctgggacggctcacctgag 121310

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>emb|AL079340.7|HSJ760G15 Human DNA sequence from clone RP4-760G15 on chromosome 11p13 Contains
             GSSs and a CpG Island, complete sequence
          Length = 114001

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 133   agcatctttcctatgccttg 152
             ||||||||||||||||||||
Sbjct: 86798 agcatctttcctatgccttg 86779

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>gb|AY129950.1| Homo sapiens cAMP-specific phosphodiesterase 8B (PDE8B) gene,
              alternatively spliced, complete cds
          Length = 216589

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 133    agcatctttcctatgccttg 152
              ||||||||||||||||||||
Sbjct: 109024 agcatctttcctatgccttg 109005

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>gb|AC090007.8| Mus Musculus Strain C57BL6/J chromosome 8 BAC, RP23-156J8, complete
             sequence
          Length = 188802

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 340   cttgctctcttgcattcttg 359
             ||||||||||||||||||||
Sbjct: 34965 cttgctctcttgcattcttg 34946

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>gb|AC109466.2| Homo sapiens chromosome 5 clone RP11-308N24, complete sequence
          Length = 153815

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 21    cagggaaggtgctgtctgca 40
             ||||||||||||||||||||
Sbjct: 65730 cagggaaggtgctgtctgca 65711

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>gb|AC022422.5| Homo sapiens chromosome 5 clone CTD-2199L4, complete sequence
          Length = 245697

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 133   agcatctttcctatgccttg 152
             ||||||||||||||||||||
Sbjct: 66177 agcatctttcctatgccttg 66158

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 62/76 (81%)
 Strand = Plus / Minus

                                                                            
Query: 309      tctgtgggacggtaggctctggaaaatcaagcttgctctcttgcattcttggtgaggtgc 368
                ||||||| || || || |||||||||||||| ||| | || ||||| || |||||| | |
Sbjct: 10912350 tctgtggaactgttggatctggaaaatcaagtttgttgtcatgcatactcggtgagatac 10912291

                                
Query: 369      caaagctatcaggaga 384
                ||| | ||||||||||
Sbjct: 10912290 caaggttatcaggaga 10912275

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>gb|AC129572.6| Mus musculus chromosome 5, clone RP23-452L7, complete sequence
          Length = 178011

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 340   cttgctctcttgcattcttg 359
             ||||||||||||||||||||
Sbjct: 21395 cttgctctcttgcattcttg 21414

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>dbj|AP004168.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1756_H07
          Length = 217205

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 62/76 (81%)
 Strand = Plus / Minus

                                                                          
Query: 309    tctgtgggacggtaggctctggaaaatcaagcttgctctcttgcattcttggtgaggtgc 368
              ||||||| || || || |||||||||||||| ||| | || ||||| || |||||| | |
Sbjct: 118549 tctgtggaactgttggatctggaaaatcaagtttgttgtcatgcatactcggtgagatac 118490

                              
Query: 369    caaagctatcaggaga 384
              ||| | ||||||||||
Sbjct: 118489 caaggttatcaggaga 118474

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>gb|AC113018.7| Mus musculus chromosome 5, clone RP23-183C18, complete sequence
          Length = 215671

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 340  cttgctctcttgcattcttg 359
            ||||||||||||||||||||
Sbjct: 8309 cttgctctcttgcattcttg 8290

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>emb|AJ535078.1|OSA535078 Oryza sativa (japonica cultivar-group) mrp4 gene for MRP-like ABC
            transporter, exons 1-12
          Length = 7960

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 62/76 (81%)
 Strand = Plus / Plus

                                                                        
Query: 309  tctgtgggacggtaggctctggaaaatcaagcttgctctcttgcattcttggtgaggtgc 368
            ||||||| || || || |||||||||||||| ||| | || ||||| || |||||| | |
Sbjct: 3139 tctgtggaactgttggatctggaaaatcaagtttgttgtcatgcatactcggtgagatac 3198

                            
Query: 369  caaagctatcaggaga 384
            ||| | ||||||||||
Sbjct: 3199 caaggttatcaggaga 3214

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>gb|CP000102.1| Methanosphaera stadtmanae DSM 3091, complete genome
          Length = 1767403

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 55      ggtgcttcaagaaccaatat 74
               ||||||||||||||||||||
Sbjct: 1273038 ggtgcttcaagaaccaatat 1273057


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,449,502
Number of Sequences: 3902068
Number of extensions: 3449502
Number of successful extensions: 59796
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59652
Number of HSP's gapped (non-prelim): 138
length of query: 449
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 427
effective length of database: 17,147,199,772
effective search space: 7321854302644
effective search space used: 7321854302644
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result