ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl44d11 |
|---|---|
| Clone Library Name | barley_pub |
>gb|CP000069.1| Trypanosoma brucei chromosome 6, complete sequence Length = 1618915 Score = 42.1 bits (21), Expect = 0.065 Identities = 21/21 (100%) Strand = Plus / Minus Query: 9 tcattccccacctcctcccca 29 ||||||||||||||||||||| Sbjct: 945231 tcattccccacctcctcccca 945211
>gb|AC074258.6| Trypanosoma brucei chromosome 6 clone RPCI93-2N9, complete sequence Length = 148326 Score = 42.1 bits (21), Expect = 0.065 Identities = 21/21 (100%) Strand = Plus / Plus Query: 9 tcattccccacctcctcccca 29 ||||||||||||||||||||| Sbjct: 141122 tcattccccacctcctcccca 141142
>ref|XM_820970.1| Trypanosoma brucei TREU927 clone RPCI93-2N9 hypothetical protein (Tb927.6.3170) partial mRNA Length = 1446 Score = 42.1 bits (21), Expect = 0.065 Identities = 21/21 (100%) Strand = Plus / Minus Query: 9 tcattccccacctcctcccca 29 ||||||||||||||||||||| Sbjct: 911 tcattccccacctcctcccca 891
>emb|AL008730.1|HS487J7 Human DNA sequence from clone RP3-487J7 on chromosome 6q21-22.1 Contains the C6orf5 gene for chromosome 6 open reading frame 5 (NFkB-activating protein ACT1, connection to IKK and SAPK/JNK, chromosome 6 open reading frame 6) (ACT1, CIKS, C6ORF6, DKFZP586G0522)(contains FLJ22949) and the 3' end of a novel gene, complete sequence Length = 116513 Score = 42.1 bits (21), Expect = 0.065 Identities = 21/21 (100%) Strand = Plus / Plus Query: 13 tccccacctcctccccatctc 33 ||||||||||||||||||||| Sbjct: 27184 tccccacctcctccccatctc 27204
>emb|AL732613.10| Mouse DNA sequence from clone RP23-193A21 on chromosome 4, complete sequence Length = 204012 Score = 42.1 bits (21), Expect = 0.065 Identities = 27/29 (93%) Strand = Plus / Plus Query: 5 ctcatcattccccacctcctccccatctc 33 |||| |||||| ||||||||||||||||| Sbjct: 103529 ctcaacattccacacctcctccccatctc 103557
>emb|BX321878.4| Human DNA sequence from clone XXyac-13CF11 on chromosome 1, complete sequence Length = 60721 Score = 40.1 bits (20), Expect = 0.25 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 ccccacctcctccccatctc 33 |||||||||||||||||||| Sbjct: 34550 ccccacctcctccccatctc 34569
>emb|AL158068.18| Human DNA sequence from clone RP11-478C1 on chromosome 4, complete sequence Length = 178338 Score = 40.1 bits (20), Expect = 0.25 Identities = 23/24 (95%) Strand = Plus / Plus Query: 1 tcacctcatcattccccacctcct 24 ||||||||||||||| |||||||| Sbjct: 13245 tcacctcatcattcctcacctcct 13268
>emb|AJ851773.1| Gallus gallus mRNA for hypothetical protein, clone 30a17 Length = 4784 Score = 40.1 bits (20), Expect = 0.25 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 ttccccacctcctccccatc 31 |||||||||||||||||||| Sbjct: 1348 ttccccacctcctccccatc 1329
>emb|Z68163.1|HSL190H5 Human DNA sequence from clone LA04NC01-190H5 on chromosome 4, complete sequence Length = 24721 Score = 40.1 bits (20), Expect = 0.25 Identities = 23/24 (95%) Strand = Plus / Plus Query: 1 tcacctcatcattccccacctcct 24 ||||||||||||||| |||||||| Sbjct: 7498 tcacctcatcattcctcacctcct 7521
>emb|AL844609.6| Mouse DNA sequence from clone RP23-356F8 on chromosome 4, complete sequence Length = 191676 Score = 40.1 bits (20), Expect = 0.25 Identities = 23/24 (95%) Strand = Plus / Minus Query: 8 atcattccccacctcctccccatc 31 ||||| |||||||||||||||||| Sbjct: 180484 atcatcccccacctcctccccatc 180461
>ref|XM_814942.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053506679.30) partial mRNA Length = 3198 Score = 38.2 bits (19), Expect = 1.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 19 cctcctccccatctcgccc 37 ||||||||||||||||||| Sbjct: 1645 cctcctccccatctcgccc 1627
>gb|AC113597.12| Mus musculus chromosome 1, clone RP23-375F6, complete sequence Length = 224996 Score = 38.2 bits (19), Expect = 1.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 15 cccacctcctccccatctc 33 ||||||||||||||||||| Sbjct: 101318 cccacctcctccccatctc 101300
>emb|AL358472.54| Human DNA sequence from clone RP11-422P24 on chromosome 1 Contains the 5' UTR of the gene for transcription repressor p66 beta component of the MeCP1 complex (P66beta), the KIAA0476 gene for a novel protein, the gene for transducer of regulated cAMP response element-binding protein (CREB) 2 (TORC2), the SLC39A1 gene for solute carrier family 39 (zinc transporter), member 1, the CREB3L4 gene for cAMP responsive element binding protein 3-like 4, the JTB gene for jumping translocation breakpoint, the RAB13 gene for RAB13, member RAS oncogene family, the RPS27 gene for ribosomal protein S27 (metallopanstimulin 1), the 3' end of the gene for nuclear pore membrane glycoprotein 210-like (LOC91181), a ribosomal protein S7 (RPS7) pseudogene and a CpG island, complete sequence Length = 175827 Score = 38.2 bits (19), Expect = 1.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 15 cccacctcctccccatctc 33 ||||||||||||||||||| Sbjct: 13735 cccacctcctccccatctc 13753
>gb|AC131969.5| Homo sapiens chromosome 8, clone CTD-2172A10, complete sequence Length = 126868 Score = 38.2 bits (19), Expect = 1.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 13 tccccacctcctccccatc 31 ||||||||||||||||||| Sbjct: 82323 tccccacctcctccccatc 82341
>gb|AC159655.8| Mus musculus 6 BAC RP24-559F15 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 200889 Score = 38.2 bits (19), Expect = 1.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 15 cccacctcctccccatctc 33 ||||||||||||||||||| Sbjct: 190001 cccacctcctccccatctc 189983
>dbj|AK124049.1| Homo sapiens cDNA FLJ42055 fis, clone SPLEN2042714 Length = 2530 Score = 38.2 bits (19), Expect = 1.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 15 cccacctcctccccatctc 33 ||||||||||||||||||| Sbjct: 157 cccacctcctccccatctc 139
>gb|AC079616.4| Homo sapiens BAC clone RP11-605L5 from 4, complete sequence Length = 165913 Score = 38.2 bits (19), Expect = 1.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 11 attccccacctcctcccca 29 ||||||||||||||||||| Sbjct: 69146 attccccacctcctcccca 69128
>gb|AC136742.15| Mus musculus chromosome 5, clone RP23-145H8, complete sequence Length = 197131 Score = 38.2 bits (19), Expect = 1.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 11 attccccacctcctcccca 29 ||||||||||||||||||| Sbjct: 120281 attccccacctcctcccca 120263
>gb|AY206387.1| Hepatitis B virus strain FMU016 complete genome Length = 2993 Score = 38.2 bits (19), Expect = 1.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 9 tcattccccacctcctccc 27 ||||||||||||||||||| Sbjct: 1690 tcattccccacctcctccc 1672
>gb|AC155651.4| Mus musculus 6 BAC RP24-111E13 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 175599 Score = 38.2 bits (19), Expect = 1.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 15 cccacctcctccccatctc 33 ||||||||||||||||||| Sbjct: 35245 cccacctcctccccatctc 35227
>gb|AC158664.5| Mus musculus 6 BAC RP23-24F17 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 232894 Score = 38.2 bits (19), Expect = 1.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 15 cccacctcctccccatctc 33 ||||||||||||||||||| Sbjct: 231778 cccacctcctccccatctc 231796
>gb|AC131097.6| Homo sapiens BAC clone RP11-789L24 from 2, complete sequence Length = 187030 Score = 38.2 bits (19), Expect = 1.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 15 cccacctcctccccatctc 33 ||||||||||||||||||| Sbjct: 71195 cccacctcctccccatctc 71177
>gb|AF363458.1| Homo sapiens programmed cell death 1 (PDCD1) gene, exons 1 through 5 and complete cds Length = 9625 Score = 38.2 bits (19), Expect = 1.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 15 cccacctcctccccatctc 33 ||||||||||||||||||| Sbjct: 473 cccacctcctccccatctc 491
>gb|AF104976.1|AF104976 Troglodytes troglodytes NADH dehydrogenase subunit 2 (ND2) gene, partial sequence; mitochondrial gene for mitochondrial product Length = 534 Score = 38.2 bits (19), Expect = 1.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 20 ctcctccccatctcgcccc 38 ||||||||||||||||||| Sbjct: 478 ctcctccccatctcgcccc 496
>gb|AF104975.1|AF104975 Troglodytes troglodytes NADH dehydrogenase subunit 2 (ND2) gene, partial sequence; mitochondrial gene for mitochondrial product Length = 534 Score = 38.2 bits (19), Expect = 1.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 20 ctcctccccatctcgcccc 38 ||||||||||||||||||| Sbjct: 478 ctcctccccatctcgcccc 496
>gb|U96629.1|HSU96629 Human chromosome 8 BAC clone CIT987SK-2A8 complete sequence Length = 167343 Score = 38.2 bits (19), Expect = 1.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 13 tccccacctcctccccatc 31 ||||||||||||||||||| Sbjct: 122649 tccccacctcctccccatc 122667
>gb|AC116841.11| Mus musculus chromosome 18, clone RP24-390I10, complete sequence Length = 155933 Score = 38.2 bits (19), Expect = 1.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 9 tcattccccacctcctccccatc 31 ||||||| ||||||||||||||| Sbjct: 87662 tcattccacacctcctccccatc 87640
>gb|AY752357.1| Neocossyphus rufus NADH dehydrogenase subunit 2 (ND2) gene, complete cds; mitochondrial Length = 1041 Score = 38.2 bits (19), Expect = 1.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 19 cctcctccccatctcgccc 37 ||||||||||||||||||| Sbjct: 1002 cctcctccccatctcgccc 1020
>gb|AC135353.3| Mus musculus BAC clone RP24-401C17 from 9, complete sequence Length = 132290 Score = 38.2 bits (19), Expect = 1.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 15 cccacctcctccccatctc 33 ||||||||||||||||||| Sbjct: 124764 cccacctcctccccatctc 124746
>gb|AC121813.3| Mus musculus BAC clone RP23-457E5 from 9, complete sequence Length = 178176 Score = 38.2 bits (19), Expect = 1.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 20 ctcctccccatctcgcccc 38 ||||||||||||||||||| Sbjct: 46207 ctcctccccatctcgcccc 46225
>gb|AC153605.2| Mus musculus 6 BAC RP23-346H23 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 229744 Score = 38.2 bits (19), Expect = 1.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 19 cctcctccccatctcgccc 37 ||||||||||||||||||| Sbjct: 69496 cctcctccccatctcgccc 69514
>gb|AC170599.2| Mus musculus BAC clone RP23-369P2 from chromosome 6, complete sequence Length = 182608 Score = 36.2 bits (18), Expect = 4.0 Identities = 21/22 (95%) Strand = Plus / Minus Query: 10 cattccccacctcctccccatc 31 |||||| ||||||||||||||| Sbjct: 91221 cattccacacctcctccccatc 91200
>gb|AC164157.3| Mus musculus BAC clone RP24-297C1 from chromosome 6, complete sequence Length = 176868 Score = 36.2 bits (18), Expect = 4.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 3 acctcatcattccccacc 20 |||||||||||||||||| Sbjct: 164789 acctcatcattccccacc 164772
>gb|AC121510.10| Mus musculus chromosome 19, clone RP24-371N19, complete sequence Length = 168677 Score = 36.2 bits (18), Expect = 4.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 12 ttccccacctcctcccca 29 |||||||||||||||||| Sbjct: 94897 ttccccacctcctcccca 94880
>gb|AC115065.11| Mus musculus chromosome 3, clone RP24-401H12, complete sequence Length = 157225 Score = 36.2 bits (18), Expect = 4.0 Identities = 18/18 (100%) Strand = Plus / Plus Query: 14 ccccacctcctccccatc 31 |||||||||||||||||| Sbjct: 39675 ccccacctcctccccatc 39692
>gb|AC002982.1| Homo sapiens cosmid HGAB from chromosome 13, complete sequence Length = 36188 Score = 36.2 bits (18), Expect = 4.0 Identities = 18/18 (100%) Strand = Plus / Plus Query: 12 ttccccacctcctcccca 29 |||||||||||||||||| Sbjct: 14775 ttccccacctcctcccca 14792
>gb|AC160962.2| Mus musculus BAC clone RP24-308N16 from chromosome 13, complete sequence Length = 147866 Score = 36.2 bits (18), Expect = 4.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 10 cattccccacctcctccc 27 |||||||||||||||||| Sbjct: 14605 cattccccacctcctccc 14588
>gb|AC136223.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0093E24, complete sequence Length = 146492 Score = 36.2 bits (18), Expect = 4.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 10 cattccccacctcctccc 27 |||||||||||||||||| Sbjct: 128750 cattccccacctcctccc 128733
>ref|XM_420616.1| PREDICTED: Gallus gallus similar to sulfotransferase (LOC422662), mRNA Length = 1530 Score = 36.2 bits (18), Expect = 4.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 1 tcacctcatcattcccca 18 |||||||||||||||||| Sbjct: 133 tcacctcatcattcccca 116
>gb|AC118286.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone OJ1384_A02, complete sequence Length = 100251 Score = 36.2 bits (18), Expect = 4.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 10 cattccccacctcctccc 27 |||||||||||||||||| Sbjct: 3017 cattccccacctcctccc 3000
>ref|NM_007870.3| Mus musculus deoxyribonuclease 1-like 3 (Dnase1l3), mRNA Length = 3702 Score = 36.2 bits (18), Expect = 4.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 16 ccacctcctccccatctc 33 |||||||||||||||||| Sbjct: 3070 ccacctcctccccatctc 3053
>gb|AC147681.8| Canis Familiaris, clone XX-10A1, complete sequence Length = 160031 Score = 36.2 bits (18), Expect = 4.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 15 cccacctcctccccatct 32 |||||||||||||||||| Sbjct: 6371 cccacctcctccccatct 6354
>gb|AC107834.13| Mus musculus chromosome 1, clone RP23-251L12, complete sequence Length = 180525 Score = 36.2 bits (18), Expect = 4.0 Identities = 21/22 (95%) Strand = Plus / Minus Query: 12 ttccccacctcctccccatctc 33 ||||||| |||||||||||||| Sbjct: 110740 ttccccatctcctccccatctc 110719
>gb|AY261360.1| African swine fever virus isolate Kenya 1950, complete genome Length = 193886 Score = 36.2 bits (18), Expect = 4.0 Identities = 21/22 (95%) Strand = Plus / Minus Query: 1 tcacctcatcattccccacctc 22 ||||||||||||||||| |||| Sbjct: 42054 tcacctcatcattcccctcctc 42033
>gb|AC156947.7| Mus musculus 10 BAC RP24-374M24 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 177171 Score = 36.2 bits (18), Expect = 4.0 Identities = 21/22 (95%) Strand = Plus / Minus Query: 10 cattccccacctcctccccatc 31 |||||| ||||||||||||||| Sbjct: 110802 cattccacacctcctccccatc 110781
>emb|CR956359.14| Pig DNA sequence from clone CH242-256J18 on chromosome 17, complete sequence Length = 139710 Score = 36.2 bits (18), Expect = 4.0 Identities = 18/18 (100%) Strand = Plus / Plus Query: 15 cccacctcctccccatct 32 |||||||||||||||||| Sbjct: 63434 cccacctcctccccatct 63451
>gb|AC138312.3| Mus musculus BAC clone RP23-235K7 from chromosome 9, complete sequence Length = 176504 Score = 36.2 bits (18), Expect = 4.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 14 ccccacctcctccccatc 31 |||||||||||||||||| Sbjct: 118376 ccccacctcctccccatc 118359
>gb|AC122879.3| Mus musculus BAC clone RP23-76C10 from 1, complete sequence Length = 250884 Score = 36.2 bits (18), Expect = 4.0 Identities = 21/22 (95%) Strand = Plus / Plus Query: 12 ttccccacctcctccccatctc 33 ||||||| |||||||||||||| Sbjct: 42278 ttccccatctcctccccatctc 42299
>gb|AC139029.10| Mus musculus chromosome 14, clone RP23-393A18, complete sequence Length = 204943 Score = 36.2 bits (18), Expect = 4.0 Identities = 18/18 (100%) Strand = Plus / Plus Query: 16 ccacctcctccccatctc 33 |||||||||||||||||| Sbjct: 69225 ccacctcctccccatctc 69242
>gb|AC130809.25| Medicago truncatula clone mth2-15i12, complete sequence Length = 114664 Score = 36.2 bits (18), Expect = 4.0 Identities = 24/26 (92%) Strand = Plus / Plus Query: 1 tcacctcatcattccccacctcctcc 26 |||||||||||||| || |||||||| Sbjct: 103404 tcacctcatcattcgcctcctcctcc 103429
>gb|AC151823.11| Medicago truncatula clone mth2-45h2, complete sequence Length = 125855 Score = 36.2 bits (18), Expect = 4.0 Identities = 24/26 (92%) Strand = Plus / Minus Query: 1 tcacctcatcattccccacctcctcc 26 |||||||||||||| || |||||||| Sbjct: 38668 tcacctcatcattcgcctcctcctcc 38643
>gb|AC163221.4| Mus musculus chromosome 19, clone RP23-376A6, complete sequence Length = 188740 Score = 36.2 bits (18), Expect = 4.0 Identities = 21/22 (95%) Strand = Plus / Plus Query: 10 cattccccacctcctccccatc 31 |||||| ||||||||||||||| Sbjct: 14720 cattccacacctcctccccatc 14741
>emb|AL353680.8| Human DNA sequence from clone RP11-252M21 on chromosome 13 Contains a novel FLJ31073 containing gene, six novel genes and a CpG island, complete sequence Length = 176930 Score = 36.2 bits (18), Expect = 4.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 12 ttccccacctcctcccca 29 |||||||||||||||||| Sbjct: 20363 ttccccacctcctcccca 20346
>emb|AL354816.5| Human DNA sequence from clone RP11-540M5 on chromosome 13 Contains the 3' end of the NUFIP1 gene for nuclear fragile X mental retardation protein interacting protein 1, complete sequence Length = 159285 Score = 36.2 bits (18), Expect = 4.0 Identities = 18/18 (100%) Strand = Plus / Plus Query: 16 ccacctcctccccatctc 33 |||||||||||||||||| Sbjct: 111685 ccacctcctccccatctc 111702
>emb|AL138966.19| Human DNA sequence from clone RP11-380N8 on chromosome 13 Contains the RNF6 gene for ring finger protein (C3H2C3 type) 6, a protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)(inhibitor of protein kinase PKR) (PRKRIR) pseudogene, a TcD37 homolog (HTCD37) pseudogene, a pseudogene similar to part of ATPase, aminophospholipid transporter (APLT), Class I, type 8A, member 1 (ATPase II aminophospholipid translocase) (ATP8A1)(ATPIA, ATPP2, ATPASEII) and 2 CpG islands, complete sequence Length = 171160 Score = 36.2 bits (18), Expect = 4.0 Identities = 18/18 (100%) Strand = Plus / Plus Query: 1 tcacctcatcattcccca 18 |||||||||||||||||| Sbjct: 15887 tcacctcatcattcccca 15904
>gb|AC010184.18| Homo sapiens 3 BAC RP11-438D8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 190580 Score = 36.2 bits (18), Expect = 4.0 Identities = 18/18 (100%) Strand = Plus / Plus Query: 12 ttccccacctcctcccca 29 |||||||||||||||||| Sbjct: 126563 ttccccacctcctcccca 126580
>emb|AL122010.10|HSJ997D16 Human DNA sequence from clone RP5-997D16 on chromosome 1p34.1-35.3 Contains two novel genes, the 3' end of the gene for SAP90/PSD-95-associated protein 3 (SAPAP3) and a CpG island, complete sequence Length = 45606 Score = 36.2 bits (18), Expect = 4.0 Identities = 18/18 (100%) Strand = Plus / Plus Query: 13 tccccacctcctccccat 30 |||||||||||||||||| Sbjct: 12440 tccccacctcctccccat 12457
>emb|AL080238.10|HSBG91O18 Human DNA sequence from clone GS1-91O18 on chromosome Xq26.3-28, complete sequence Length = 47007 Score = 36.2 bits (18), Expect = 4.0 Identities = 18/18 (100%) Strand = Plus / Plus Query: 12 ttccccacctcctcccca 29 |||||||||||||||||| Sbjct: 7027 ttccccacctcctcccca 7044
>emb|AL050309.4|HSJ148M19 Human DNA sequence from clone RP1-148M19 on chromosome Xp11.22-11.3 Contains the 5' end of the KLF8 gene for Kruppel-like factor 8 and a ribosomal protein L23a (RPL23A) pseudogene, complete sequence Length = 177483 Score = 36.2 bits (18), Expect = 4.0 Identities = 18/18 (100%) Strand = Plus / Plus Query: 1 tcacctcatcattcccca 18 |||||||||||||||||| Sbjct: 150785 tcacctcatcattcccca 150802
>emb|AL022398.1|HS434O14 Human DNA sequence from clone RP3-434O14 on chromosome 1q32.3-41 Contains the 3' end of the HSD11B1 gene for hydroxysteroid (11-beta) dehydrogenase 1, a adenosine A2b receptor (ADORA2B) pseudogene, the T3JAM gene for TRAF3-interacting Jun N-terminal kinase (JNK)-activating modulator, a novel gene (FLJ25078), the IRF6 gene for interferon regulatory factor 6, a novel gene, a novel gene (MGC29875) and the 5' end of a novel gene, complete sequence Length = 135928 Score = 36.2 bits (18), Expect = 4.0 Identities = 18/18 (100%) Strand = Plus / Plus Query: 12 ttccccacctcctcccca 29 |||||||||||||||||| Sbjct: 2784 ttccccacctcctcccca 2801
>emb|X16619.1|CRARG7 Chlamydomonas reinhardtii ARG7 gene for argininosuccinate lyase Length = 8670 Score = 36.2 bits (18), Expect = 4.0 Identities = 25/26 (96%), Gaps = 1/26 (3%) Strand = Plus / Plus Query: 14 ccccacctcct-ccccatctcgcccc 38 ||||||||||| |||||||||||||| Sbjct: 4572 ccccacctcctcccccatctcgcccc 4597
>gb|AC162911.2| Mus musculus BAC clone RP24-363M14 from chromosome 12, complete sequence Length = 150202 Score = 36.2 bits (18), Expect = 4.0 Identities = 21/22 (95%) Strand = Plus / Plus Query: 10 cattccccacctcctccccatc 31 |||||| ||||||||||||||| Sbjct: 120392 cattccacacctcctccccatc 120413
>gb|AC131386.2| Homo sapiens chromosome 5 clone CTD-3179P9, complete sequence Length = 169076 Score = 36.2 bits (18), Expect = 4.0 Identities = 21/22 (95%) Strand = Plus / Minus Query: 6 tcatcattccccacctcctccc 27 |||||||||| ||||||||||| Sbjct: 164868 tcatcattccacacctcctccc 164847
>gb|AC128688.4| Homo sapiens 3 BAC RP11-757F18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 81001 Score = 36.2 bits (18), Expect = 4.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 16 ccacctcctccccatctc 33 |||||||||||||||||| Sbjct: 70847 ccacctcctccccatctc 70830
>dbj|AK125521.1| Homo sapiens cDNA FLJ43533 fis, clone PLACE7001544 Length = 4218 Score = 36.2 bits (18), Expect = 4.0 Identities = 18/18 (100%) Strand = Plus / Plus Query: 16 ccacctcctccccatctc 33 |||||||||||||||||| Sbjct: 3487 ccacctcctccccatctc 3504
>gb|AF327841.1| African swine fever virus European isolate E70 left variable region delta NL, partial sequence Length = 19300 Score = 36.2 bits (18), Expect = 4.0 Identities = 21/22 (95%) Strand = Plus / Minus Query: 2 cacctcatcattccccacctcc 23 |||||||||||||||| ||||| Sbjct: 8697 cacctcatcattcccctcctcc 8676
>gb|AC140322.4| Mus musculus BAC clone RP23-413F14 from chromosome 14, complete sequence Length = 205679 Score = 36.2 bits (18), Expect = 4.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 16 ccacctcctccccatctc 33 |||||||||||||||||| Sbjct: 21960 ccacctcctccccatctc 21943
>dbj|AK156109.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830008E09 product:deoxyribonuclease 1-like 3, full insert sequence Length = 4184 Score = 36.2 bits (18), Expect = 4.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 16 ccacctcctccccatctc 33 |||||||||||||||||| Sbjct: 2896 ccacctcctccccatctc 2879
>ref|XM_940825.1| PREDICTED: Homo sapiens discs, large (Drosophila) homolog-associated protein 3 (DLGAP3), mRNA Length = 3581 Score = 36.2 bits (18), Expect = 4.0 Identities = 18/18 (100%) Strand = Plus / Plus Query: 13 tccccacctcctccccat 30 |||||||||||||||||| Sbjct: 3203 tccccacctcctccccat 3220
>ref|XM_035601.8| PREDICTED: Homo sapiens discs, large (Drosophila) homolog-associated protein 3 (DLGAP3), mRNA Length = 3581 Score = 36.2 bits (18), Expect = 4.0 Identities = 18/18 (100%) Strand = Plus / Plus Query: 13 tccccacctcctccccat 30 |||||||||||||||||| Sbjct: 3203 tccccacctcctccccat 3220
>dbj|AK164072.1| Mus musculus 7 days embryo whole body cDNA, RIKEN full-length enriched library, clone:C430048A08 product:deoxyribonuclease 1-like 3, full insert sequence Length = 2530 Score = 36.2 bits (18), Expect = 4.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 16 ccacctcctccccatctc 33 |||||||||||||||||| Sbjct: 1903 ccacctcctccccatctc 1886
>emb|CR407497.1| Gallus gallus finished cDNA, clone ChEST135a15 Length = 1133 Score = 36.2 bits (18), Expect = 4.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 1 tcacctcatcattcccca 18 |||||||||||||||||| Sbjct: 144 tcacctcatcattcccca 127
>gb|AC154773.2| Mus musculus BAC clone RP24-448I5 from chromosome 16, complete sequence Length = 167529 Score = 36.2 bits (18), Expect = 4.0 Identities = 21/22 (95%) Strand = Plus / Plus Query: 10 cattccccacctcctccccatc 31 |||||| ||||||||||||||| Sbjct: 87195 cattccacacctcctccccatc 87216
>dbj|AK084754.1| Mus musculus 13 days embryo heart cDNA, RIKEN full-length enriched library, clone:D330038P16 product:unclassifiable, full insert sequence Length = 3077 Score = 36.2 bits (18), Expect = 4.0 Identities = 18/18 (100%) Strand = Plus / Plus Query: 12 ttccccacctcctcccca 29 |||||||||||||||||| Sbjct: 204 ttccccacctcctcccca 221
>dbj|AK079519.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A130098B16 product:unclassifiable, full insert sequence Length = 4056 Score = 36.2 bits (18), Expect = 4.0 Identities = 21/22 (95%) Strand = Plus / Plus Query: 10 cattccccacctcctccccatc 31 |||||| ||||||||||||||| Sbjct: 181 cattccacacctcctccccatc 202
>gb|AF327840.1|AF327840 African swine fever virus isolate MS16 left variable region, partial sequence Length = 30354 Score = 36.2 bits (18), Expect = 4.0 Identities = 21/22 (95%) Strand = Plus / Minus Query: 2 cacctcatcattccccacctcc 23 |||||||||||||||| ||||| Sbjct: 11467 cacctcatcattcccctcctcc 11446
>gb|AF327839.1|AF327839 African swine fever virus European isolate E70 left variable region, partial sequence Length = 38322 Score = 36.2 bits (18), Expect = 4.0 Identities = 21/22 (95%) Strand = Plus / Minus Query: 2 cacctcatcattccccacctcc 23 |||||||||||||||| ||||| Sbjct: 30264 cacctcatcattcccctcctcc 30243
>emb|BX933595.2| Gallus gallus finished cDNA, clone ChEST149b21 Length = 1097 Score = 36.2 bits (18), Expect = 4.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 1 tcacctcatcattcccca 18 |||||||||||||||||| Sbjct: 106 tcacctcatcattcccca 89
>emb|BX890626.7| Zebrafish DNA sequence from clone CH211-12A5 in linkage group 13, complete sequence Length = 20707 Score = 36.2 bits (18), Expect = 4.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 14 ccccacctcctccccatc 31 |||||||||||||||||| Sbjct: 17689 ccccacctcctccccatc 17672
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 36.2 bits (18), Expect = 4.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 10 cattccccacctcctccc 27 |||||||||||||||||| Sbjct: 8206529 cattccccacctcctccc 8206512
>gb|AC019206.4| Homo sapiens BAC clone RP11-401N16 from 2, complete sequence Length = 207818 Score = 36.2 bits (18), Expect = 4.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 12 ttccccacctcctcccca 29 |||||||||||||||||| Sbjct: 96774 ttccccacctcctcccca 96757
>gb|AY024355.1| Mus musculus DNase gamma gene, complete cds Length = 30807 Score = 36.2 bits (18), Expect = 4.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 16 ccacctcctccccatctc 33 |||||||||||||||||| Sbjct: 30078 ccacctcctccccatctc 30061
>emb|BX088685.8| Zebrafish DNA sequence from clone CH211-206G7, complete sequence Length = 169155 Score = 36.2 bits (18), Expect = 4.0 Identities = 18/18 (100%) Strand = Plus / Plus Query: 16 ccacctcctccccatctc 33 |||||||||||||||||| Sbjct: 65874 ccacctcctccccatctc 65891
>gb|AY261362.1| African swine fever virus isolate Mkuzi 1979, complete genome Length = 192714 Score = 36.2 bits (18), Expect = 4.0 Identities = 21/22 (95%) Strand = Plus / Minus Query: 2 cacctcatcattccccacctcc 23 |||||||||||||||| ||||| Sbjct: 39255 cacctcatcattcccctcctcc 39234
>emb|BX649404.8| Zebrafish DNA sequence from clone CH211-285O15 in linkage group 22, complete sequence Length = 154434 Score = 36.2 bits (18), Expect = 4.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 10 cattccccacctcctccc 27 |||||||||||||||||| Sbjct: 56989 cattccccacctcctccc 56972
>gb|AC101935.10| Mus musculus chromosome 15, clone RP24-76H22, complete sequence Length = 216277 Score = 36.2 bits (18), Expect = 4.0 Identities = 21/22 (95%) Strand = Plus / Plus Query: 7 catcattccccacctcctcccc 28 ||||||||||| |||||||||| Sbjct: 76356 catcattccccccctcctcccc 76377
>emb|CT737394.2| Pan troglodytes chromosome X clone PTB-130F19 map Xq28, complete sequence Length = 188890 Score = 36.2 bits (18), Expect = 4.0 Identities = 18/18 (100%) Strand = Plus / Plus Query: 12 ttccccacctcctcccca 29 |||||||||||||||||| Sbjct: 107498 ttccccacctcctcccca 107515
>gb|AF131778.1|AF131778 Homo sapiens clone 24861 DAP-1 alpha mRNA sequence, partial cds Length = 1645 Score = 36.2 bits (18), Expect = 4.0 Identities = 18/18 (100%) Strand = Plus / Plus Query: 13 tccccacctcctccccat 30 |||||||||||||||||| Sbjct: 1243 tccccacctcctccccat 1260
>emb|BX640462.6| Zebrafish DNA sequence from clone CH211-153D8 in linkage group 24, complete sequence Length = 173882 Score = 36.2 bits (18), Expect = 4.0 Identities = 18/18 (100%) Strand = Plus / Plus Query: 16 ccacctcctccccatctc 33 |||||||||||||||||| Sbjct: 11366 ccacctcctccccatctc 11383
>emb|CT027556.11| Mouse DNA sequence from clone RP23-405M23 on chromosome 12, complete sequence Length = 209313 Score = 36.2 bits (18), Expect = 4.0 Identities = 21/22 (95%) Strand = Plus / Minus Query: 10 cattccccacctcctccccatc 31 |||||| ||||||||||||||| Sbjct: 86892 cattccacacctcctccccatc 86871
>gb|AC136426.2| Homo sapiens chromosome 5 clone CTD-2008N14, complete sequence Length = 121099 Score = 36.2 bits (18), Expect = 4.0 Identities = 21/22 (95%) Strand = Plus / Minus Query: 6 tcatcattccccacctcctccc 27 |||||||||| ||||||||||| Sbjct: 33794 tcatcattccacacctcctccc 33773
>gb|AC134607.5| Mus musculus BAC clone RP23-65J2 from chromosome 9, complete sequence Length = 230480 Score = 36.2 bits (18), Expect = 4.0 Identities = 18/18 (100%) Strand = Plus / Plus Query: 13 tccccacctcctccccat 30 |||||||||||||||||| Sbjct: 38430 tccccacctcctccccat 38447
>emb|CT033751.4| Mouse DNA sequence from clone RP24-236O3 on chromosome 17, complete sequence Length = 171391 Score = 36.2 bits (18), Expect = 4.0 Identities = 18/18 (100%) Strand = Plus / Plus Query: 4 cctcatcattccccacct 21 |||||||||||||||||| Sbjct: 123082 cctcatcattccccacct 123099
>gb|AC005668.1|AC005668 Homo sapiens chromosome 17, clone hRPK.243_K_12, complete sequence Length = 152355 Score = 36.2 bits (18), Expect = 4.0 Identities = 18/18 (100%) Strand = Plus / Plus Query: 16 ccacctcctccccatctc 33 |||||||||||||||||| Sbjct: 75681 ccacctcctccccatctc 75698
>gb|AC002397.1|AC002397 Mouse chromosome 6 BAC-284H12 (Research Genetics mouse BAC library) complete sequence Length = 227538 Score = 36.2 bits (18), Expect = 4.0 Identities = 18/18 (100%) Strand = Plus / Plus Query: 3 acctcatcattccccacc 20 |||||||||||||||||| Sbjct: 128893 acctcatcattccccacc 128910
>gb|AC004088.1|AC004088 Homo sapiens cosmid HGAC from chromosome 13, complete sequence Length = 44760 Score = 36.2 bits (18), Expect = 4.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 12 ttccccacctcctcccca 29 |||||||||||||||||| Sbjct: 20687 ttccccacctcctcccca 20670
>emb|CT010498.7| Mouse DNA sequence from clone RP23-105I10 on chromosome 13, complete sequence Length = 207035 Score = 36.2 bits (18), Expect = 4.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 10 cattccccacctcctccc 27 |||||||||||||||||| Sbjct: 190043 cattccccacctcctccc 190026
>dbj|AP004980.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT13N17, TM0436a, complete sequence Length = 23709 Score = 36.2 bits (18), Expect = 4.0 Identities = 18/18 (100%) Strand = Plus / Plus Query: 6 tcatcattccccacctcc 23 |||||||||||||||||| Sbjct: 14012 tcatcattccccacctcc 14029
>emb|AL627257.9| Mouse DNA sequence from clone RP23-3L4 on chromosome 4, complete sequence Length = 241053 Score = 36.2 bits (18), Expect = 4.0 Identities = 18/18 (100%) Strand = Plus / Plus Query: 9 tcattccccacctcctcc 26 |||||||||||||||||| Sbjct: 239590 tcattccccacctcctcc 239607
>gb|U18466.1|ASU18466 African swine fever virus, complete genome Length = 170101 Score = 36.2 bits (18), Expect = 4.0 Identities = 21/22 (95%) Strand = Plus / Minus Query: 2 cacctcatcattccccacctcc 23 |||||||||||||||| ||||| Sbjct: 22153 cacctcatcattcccctcctcc 22132
>emb|AL670175.12| Mouse DNA sequence from clone RP23-309K20 on chromosome 4, complete sequence Length = 168158 Score = 36.2 bits (18), Expect = 4.0 Identities = 18/18 (100%) Strand = Plus / Plus Query: 9 tcattccccacctcctcc 26 |||||||||||||||||| Sbjct: 21915 tcattccccacctcctcc 21932
>gb|AC163216.10| Mus musculus chromosome 1, clone RP23-69G5, complete sequence Length = 260188 Score = 36.2 bits (18), Expect = 4.0 Identities = 21/22 (95%) Strand = Plus / Minus Query: 12 ttccccacctcctccccatctc 33 ||||||| |||||||||||||| Sbjct: 46933 ttccccatctcctccccatctc 46912
>emb|AL590762.1|HSXDPA Homo sapiens chromosome X sequence from 6 PACs 1 BAC and 1 cosmid, region GJB1-DXS559 map Xq13.1; segment 1/2, complete sequence Length = 305000 Score = 36.2 bits (18), Expect = 4.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 tccccacctcctccccat 30 |||||||||||||||||| Sbjct: 142881 tccccacctcctccccat 142864
>gb|AC092145.2| Homo sapiens chromosome 16 clone RP11-61F12, complete sequence Length = 113176 Score = 36.2 bits (18), Expect = 4.0 Identities = 18/18 (100%) Strand = Plus / Plus Query: 15 cccacctcctccccatct 32 |||||||||||||||||| Sbjct: 63376 cccacctcctccccatct 63393
>gb|AC163663.3| Mus musculus BAC clone RP24-241H23 from chromosome 6, complete sequence Length = 176956 Score = 36.2 bits (18), Expect = 4.0 Identities = 21/22 (95%) Strand = Plus / Plus Query: 10 cattccccacctcctccccatc 31 |||||| ||||||||||||||| Sbjct: 173006 cattccacacctcctccccatc 173027
>gb|U02468.1|ASU02468 African swine fever virus BA71V (A489R, A280R, A505R, A498R, A528R, A506R, and A542R) genes, complete cds Length = 11424 Score = 36.2 bits (18), Expect = 4.0 Identities = 21/22 (95%) Strand = Plus / Minus Query: 2 cacctcatcattccccacctcc 23 |||||||||||||||| ||||| Sbjct: 4457 cacctcatcattcccctcctcc 4436 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 415,113 Number of Sequences: 3902068 Number of extensions: 415113 Number of successful extensions: 123205 Number of sequences better than 10.0: 106 Number of HSP's better than 10.0 without gapping: 105 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 122908 Number of HSP's gapped (non-prelim): 297 length of query: 38 length of database: 17,233,045,268 effective HSP length: 20 effective length of query: 18 effective length of database: 17,155,003,908 effective search space: 308790070344 effective search space used: 308790070344 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)
