ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl44g10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1tpg|BK005520.1| TPA: TPA_exp: Sus scrofa prepro-beta-defensin 12... 42 0.25
2gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete ... 38 3.9
3gb|AE007262.1| Sinorhizobium meliloti 1021 plasmid pSymA section... 38 3.9
4ref|XM_542950.2| PREDICTED: Canis familiaris similar to forkhead... 38 3.9
5gb|AC123934.2| Mus musculus BAC clone RP23-354D22 from chromosom... 38 3.9
6gb|AC109612.22| Mus musculus strain C57BL/6J clone rp23-37i3 map... 38 3.9
7gb|L79898.1|FUGGNAI2D Fugu rubripes guanine nucleotide binding p... 38 3.9
8gb|AC010907.10| Homo sapiens BAC clone RP11-568H24 from 2, compl... 38 3.9
9gb|AC114785.5| Homo sapiens BAC clone RP11-607G14 from 2, comple... 38 3.9

>tpg|BK005520.1| TPA: TPA_exp: Sus scrofa prepro-beta-defensin 125 protein mRNA,
          complete cds
          Length = 796

 Score = 42.1 bits (21), Expect = 0.25
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 34 tctgggagagaagcagctctg 54
          |||||||||||||||||||||
Sbjct: 31 tctgggagagaagcagctctg 11



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>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 43      gaagcagctctggacgccg 61
               |||||||||||||||||||
Sbjct: 2482899 gaagcagctctggacgccg 2482917



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>gb|AE007262.1| Sinorhizobium meliloti 1021 plasmid pSymA section 68 of 121 of the
            complete plasmid sequence
          Length = 10967

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 43   gaagcagctctggacgccg 61
            |||||||||||||||||||
Sbjct: 9096 gaagcagctctggacgccg 9078



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>ref|XM_542950.2| PREDICTED: Canis familiaris similar to forkhead-like 18
           (LOC485826), mRNA
          Length = 1395

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 47  cagctctggacgccgagcc 65
           |||||||||||||||||||
Sbjct: 326 cagctctggacgccgagcc 344



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>gb|AC123934.2| Mus musculus BAC clone RP23-354D22 from chromosome 17, complete sequence
          Length = 207817

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 39     gagagaagcagctctggac 57
              |||||||||||||||||||
Sbjct: 139659 gagagaagcagctctggac 139641



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>gb|AC109612.22| Mus musculus strain C57BL/6J clone rp23-37i3 map 17, complete
           sequence
          Length = 179382

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 39  gagagaagcagctctggac 57
           |||||||||||||||||||
Sbjct: 323 gagagaagcagctctggac 305



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>gb|L79898.1|FUGGNAI2D Fugu rubripes guanine nucleotide binding protein (Gnai2) gene, exons
            1-8 and complete cds
          Length = 6893

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 43   gaagcagctctggacgccg 61
            |||||||||||||||||||
Sbjct: 4175 gaagcagctctggacgccg 4157



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>gb|AC010907.10| Homo sapiens BAC clone RP11-568H24 from 2, complete sequence
          Length = 139357

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 72    tcccttccctcgcacgcac 90
             |||||||||||||||||||
Sbjct: 49755 tcccttccctcgcacgcac 49773



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>gb|AC114785.5| Homo sapiens BAC clone RP11-607G14 from 2, complete sequence
          Length = 118022

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 38    ggagagaagcagctctgga 56
             |||||||||||||||||||
Sbjct: 58828 ggagagaagcagctctgga 58846


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 605,003
Number of Sequences: 3902068
Number of extensions: 605003
Number of successful extensions: 54046
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54016
Number of HSP's gapped (non-prelim): 30
length of query: 90
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 69
effective length of database: 17,151,101,840
effective search space: 1183426026960
effective search space used: 1183426026960
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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