>CEA20_HUMAN (Q6UY09) Carcinoembryonic antigen-related cell adhesion molecule 20|
           precursor
          Length = 585

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = +3

Query: 24  LPHDDRRGRLASPWRAPPDRAGPAMVHSAYDAVELVSGVPGRIEAV 161
           LP   RRG   SPW+ PP    P +         LVS VP  +E++
Sbjct: 540 LPSASRRGNSFSPWKPPPKPLMPPL--------RLVSTVPKNMESI 577

>CARB_XANAC (P58942) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)|
           (Carbamoyl-phosphate synthetase ammonia chain)
          Length = 1080

 Score = 30.0 bits (66), Expect = 2.2
 Identities = 18/47 (38%), Positives = 21/47 (44%)
 Frame = +3

Query: 114 DAVELVSGVPGRIEAVASHAGKLLVAASDCSLRIYSAPPPADGEIRR 254
           D   L+ GV   IE    H+G      S CSL  YS  P    E+RR
Sbjct: 771 DGNVLIGGVMEHIEEAGVHSGD-----SSCSLPPYSLSPQTQAELRR 812

>GR65_MOUSE (Q91X51) Golgi reassembly-stacking protein 1 (Golgi|
           reassembly-stacking protein of 65 kDa) (GRASP65) (Golgi
           peripheral membrane protein p65)
          Length = 445

 Score = 30.0 bits (66), Expect = 2.2
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
 Frame = +3

Query: 60  PWRAPPDRAGPAMVHSAYDAVELVSGVPGR-IEAVASHAGKLLVAASDC-----SLRIYS 221
           PW  P D +GP +     D +E +  VPG  +E      G     A+DC     ++ I  
Sbjct: 236 PWPIPQDSSGPELGSRQSDFMEALPQVPGSFMEGQLLGPGSPSHGAADCGGCLRAMEIPL 295

Query: 222 APPP 233
            PPP
Sbjct: 296 QPPP 299

>PGCA_HUMAN (P16112) Aggrecan core protein precursor (Cartilage-specific|
           proteoglycan core protein) (CSPCP) (Chondroitin sulfate
           proteoglycan core protein 1) [Contains: Aggrecan core
           protein 2]
          Length = 2415

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 33  DDRRGRLASPWRAPPDRAGPAMVHSAYDAVELVSGVPGR 149
           ++  G    PW  P    GPA   ++ D V  V+ VPG+
Sbjct: 433 ENETGEATRPWGFPTPGLGPATAFTSEDLVVQVTAVPGQ 471

>FMT_CAUCR (Q9ABE9) Methionyl-tRNA formyltransferase (EC 2.1.2.9)|
          Length = 308

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 23/73 (31%), Positives = 29/73 (39%), Gaps = 4/73 (5%)
 Frame = +3

Query: 36  DRRGRLASP----WRAPPDRAGPAMVHSAYDAVELVSGVPGRIEAVASHAGKLLVAASDC 203
           DR  R  SP    W   P   GP  V +    VE  SGV G      +    LL+A  + 
Sbjct: 221 DRHIRGLSPFPGAWFEAPSEKGPVRVKALLSRVEAASGVAG-----TTLDDALLIACGEG 275

Query: 204 SLRIYSAPPPADG 242
           S+R+  A     G
Sbjct: 276 SIRLLKAQREGKG 288

>EPAS1_RAT (Q9JHS1) Endothelial PAS domain-containing protein 1 (EPAS-1)|
           (Hypoxia-inducible factor 2 alpha) (HIF-2 alpha) (HIF2
           alpha)
          Length = 874

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = -1

Query: 247 ISPSAGGGAE*MRSEQSEAATRSFPAWEATASMRPGTPETSSTASYALCTMAGP 86
           I P     A  +RS  +++ +RS PA+    +  PG    S+T+S +  T + P
Sbjct: 431 ILPPGQPWATELRSHSAQSESRSLPAFTVPQAGSPGNATPSATSSSSCSTPSSP 484

>VID21_GIBZE (Q4IB96) Chromatin modification-related protein VID21|
          Length = 1629

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = -1

Query: 205 EQSEAATRSFPAWEATASMRPGTPETSSTASYALCTMAGPARSGGAL 65
           +QS  A+ S  +  A  S RP TPETS+ ++     +  PA++  A+
Sbjct: 214 QQSNRASLSTKSDAAATSTRPNTPETSTESATTANPVPPPAKNTQAV 260

>ICP0_HHV2H (P28284) Trans-acting transcriptional protein ICP0 (VMW118 protein)|
          Length = 825

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 22/64 (34%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
 Frame = -1

Query: 259 PSLRISPS-AGGGAE*MRSEQSEAATRSFPAWEATASMRPGTPETSSTASYALCTMAGPA 83
           P+ R +P   GGGA   R     AATR  P         PG P +SS+    L    G  
Sbjct: 257 PAPRRAPRRGGGGAGATRGTSQPAATRPAP---------PGAPRSSSSGGAPLRAGVGSG 307

Query: 82  RSGG 71
             GG
Sbjct: 308 SGGG 311

>RGS20_HUMAN (O76081) Regulator of G-protein signaling 20 (RGS20) (Regulator of|
           Gz-selective protein signaling 1) (Gz-selective
           GTPase-activating protein) (G(z)GAP)
          Length = 388

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = -1

Query: 214 MRSEQSEAATRSFPAWEATASMRPGTPETSSTASYALC 101
           M SE+ E   R  PA + T    PG P   S  S A C
Sbjct: 172 MGSERMEMRKRQMPAAQDTPGAAPGQPGAGSRGSNACC 209

>YEHM_ECOLI (P33349) Hypothetical protein yehM|
          Length = 759

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 157 ASMRPGTPETSSTASYALCTMAGPARSGGALHG 59
           A MR   P  S+ A+  +     PA+SG ALHG
Sbjct: 623 ALMRLEHPNASAEAALTMLAQLSPAQSGEALHG 655

>CARB_HAEDU (Q7VP67) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)|
           (Carbamoyl-phosphate synthetase ammonia chain)
          Length = 1075

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +3

Query: 126 LVSGVPGRIEAVASHAGKLLVAASDCSLRIYSAPPPADGEIRR 254
           L+ G+   +E    H+G      S CSL  YS      GEIRR
Sbjct: 768 LIGGIMQHVEQAGIHSGD-----SACSLPAYSLTNEVQGEIRR 805

>KPTA_DEIRA (Q9RRR1) Probable RNA 2'-phosphotransferase (EC 2.7.-.-)|
          Length = 283

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 30/97 (30%), Positives = 41/97 (42%), Gaps = 5/97 (5%)
 Frame = +3

Query: 18  FLLPHDDRRGRLASPWRAPPDRAGPAMVHSAYDAVE-----LVSGVPGRIEAVASHAGKL 182
           F LP + RR RL  P    P    PA+ + A  ++      L S  P   E    HAG  
Sbjct: 98  FSLPQNRRR-RLGLPAEGVP--LDPALKNGACASLSVRRWRLFSAAPRAGEGWR-HAGTR 153

Query: 183 LVAASDCSLRIYSAPPPADGEIRRDGPYALERQEQRL 293
            V A+  + R+ +  P A   IRR+G   + R    L
Sbjct: 154 RVGAAGAAARLPAGQPGAPDAIRREGLRPVHRHHVSL 190

>SYL_RHILO (Q98EU7) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 875

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +3

Query: 207 LRIYSAPPPADGEIRRDGPYALERQEQRLWRRAPSAME 320
           L +  +PP  D E   DG     R  QR+WR   +A E
Sbjct: 657 LMLSDSPPEGDVEWTDDGAAGAHRFMQRIWRLVSTAAE 694

>PHLPP_MOUSE (Q8CHE4) PH domain leucine-rich repeat-containing protein|
           phosphatase (EC 3.1.3.16) (PH domain leucine-rich repeat
           protein phosphatase) (Pleckstrin homology
           domain-containing family E protein 1) (Suprachiasmatic
           nucleus circadian oscillatory
          Length = 1687

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
 Frame = -1

Query: 301 RRQRRCSWRSSA*GPSLRISPSAGGGAE-------*MRSEQSEAATRSFPAWEATASMRP 143
           RR+RR + + +A G +    P+AGGGA         ++   S AA  S  +  ++AS   
Sbjct: 72  RRRRRGAPQPAAGGAAP--VPAAGGGANSLLLKRGRLKRNLSAAAAASSSSSPSSASSAA 129

Query: 142 GTPETSSTASYALCT 98
           G    S +AS +LCT
Sbjct: 130 GGLPASCSASASLCT 144

>EPAS1_HUMAN (Q99814) Endothelial PAS domain-containing protein 1 (EPAS-1)|
           (Member of PAS protein 2) (MOP2) (Hypoxia-inducible
           factor 2 alpha) (HIF-2 alpha) (HIF2 alpha) (HIF-1
           alpha-like factor) (HLF)
          Length = 870

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 18/59 (30%), Positives = 32/59 (54%)
 Frame = -1

Query: 274 SSA*GPSLRISPSAGGGAE*MRSEQSEAATRSFPAWEATASMRPGTPETSSTASYALCT 98
           SSA G ++ + PS     E +RS  +++   S PA+    +  PG+   S+T+S + C+
Sbjct: 424 SSAYGKAI-LPPSQPWATE-LRSHSTQSEAGSLPAFTVPQAAAPGSTTPSATSSSSSCS 480


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,283,194
Number of Sequences: 219361
Number of extensions: 549634
Number of successful extensions: 2201
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 2144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2198
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2169600302
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)