>SMF_ECOLI (P30852) Protein smf|
          Length = 374

 Score = 31.6 bits (70), Expect = 0.47
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
 Frame = +2

Query: 152 AKTPQQTPPVCITAEKGIVPTPSIIFQLLEIGFTVGDVAVLP----RSGTGCMLRRSN 313
           A    +  PV + AE+   P P ++ QLLE+    G +A +P    R    C +RR+N
Sbjct: 315 ANVGDEVTPVDVVAERAGQPVPEVVTQLLELEL-AGWIAAVPGGYVRLRRACHVRRTN 371

>ILVR_CAUCR (P52670) HTH-type transcriptional regulator ilvR (Isoleucine|
           biosynthesis transcriptional activator)
          Length = 296

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 20/64 (31%), Positives = 30/64 (46%)
 Frame = +2

Query: 116 VAARGQPWTLPPAKTPQQTPPVCITAEKGIVPTPSIIFQLLEIGFTVGDVAVLPRSGTGC 295
           VAARGQP  +       QT    ++A  G+   P+ + +L  +G    D+   P   TG 
Sbjct: 211 VAARGQPVRIVQEAIQMQTIISLVSAGLGMALAPASLRKLARVGVRYVDLVDPPILETGL 270

Query: 296 MLRR 307
           + RR
Sbjct: 271 VWRR 274

>CESA2_ARATH (O48947) Cellulose synthase A catalytic subunit 2 [UDP-forming] (EC|
            2.4.1.12) (AtCesA-2) (Ath-A)
          Length = 1084

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
 Frame = +2

Query: 134  PWTLPPAKTPQQTPPVCITAEKGIVPTPS----IIFQLLEIGFTVGDVAVLPRSGTG 292
            PWT  P       P VC+   K IVP  S    I+F L+ I   V  +  +   G G
Sbjct: 864  PWTSLPLIVYCSLPAVCLLTGKFIVPEISNYAGILFMLMFISIAVTGILEMQWGGVG 920

>MARCS_HUMAN (P29966) Myristoylated alanine-rich C-kinase substrate (MARCKS)|
           (Protein kinase C substrate, 80 kDa protein, light
           chain) (PKCSL) (80K-L protein)
          Length = 331

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -1

Query: 145 QRPWLAAGGDEARGGAPEATRRGGVAGGDEA 53
           + P    G DEA GGA  A    G A G++A
Sbjct: 184 EAPAAEGGKDEAAGGAAAAAAEAGAASGEQA 214

>IF2_NOCFA (Q5YSC6) Translation initiation factor IF-2|
          Length = 969

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 16/28 (57%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -1

Query: 142 RPWLAAGGDEAR-GGAPEATRRGGVAGG 62
           RP  +AGG   R GGAP A R GG  GG
Sbjct: 265 RPGPSAGGRPGRPGGAPGAGRPGGGGGG 292

>YIH7_YEAST (P40508) Hypothetical 36.9 kDa protein in THS1-SEC28 intergenic|
           region
          Length = 320

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
 Frame = +1

Query: 169 DPSGMYYRRKRNRPDPINNLSITGNRVHSW-----GCGSVTKEWDRV 294
           DP G+Y  + R  PDPI         + SW     G  S +  W+ +
Sbjct: 218 DPIGLYRNKGRKSPDPIEGEQNDSPVLSSWEKIRNGDNSSSSSWENI 264

>NELFA_MOUSE (Q8BG30) Negative elongation factor A (NELF-A) (Wolf-Hirschhorn|
           syndrome candidate 2 homolog) (mWHSC2)
          Length = 530

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +2

Query: 140 TLPPAKTPQ-QTPPVCITAEKGIVPTP 217
           T PPA TP  QTPPV + A +   P P
Sbjct: 398 TTPPAVTPTAQTPPVAMVAPQTQAPAP 424

>SLAP2_CLOTM (Q06853) Cell surface glycoprotein 2 precursor (S-layer protein 2)|
          Length = 688

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 134 PWTLPPAKTPQQTPPVCITAEKGIVPTPSI 223
           P T  P++TP QTPP      +    TP++
Sbjct: 384 PTTTAPSQTPTQTPPTTTAPSQTPTQTPAV 413

>SWC4_NEUCR (Q870Q1) SWR1-complex protein 4|
          Length = 771

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = -1

Query: 124 GGDEAR--GGAPEATRRGGVAGGDEAK 50
           GG+E    GGA +  + GG AGGD+AK
Sbjct: 587 GGEEEGEGGGADDKQKDGGGAGGDDAK 613

>SFR15_RAT (Q63627) Splicing factor, arginine/serine-rich 15 (CTD-binding|
           SR-like protein RA4) (Fragment)
          Length = 1048

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +2

Query: 134 PWTLPPAKTPQQTPPVCITAEKGIVPTPSIIFQLLEIGFTVGDVAVLP 277
           P +LP   TP  T PV +   +G+ P P I  Q    G   G   ++P
Sbjct: 707 PTSLP---TPPVTQPVSLLGTQGVAPGPVIGLQAPSTGLLGGRPGLIP 751

>EPN1_HUMAN (Q9Y6I3) Epsin-1 (EPS-15-interacting protein 1) (EH domain-binding|
           mitotic phosphoprotein)
          Length = 551

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +2

Query: 113 LVAARGQPWTLPPAKTPQQTPPVCITAEKGIVPTPSII 226
           L  A G P   PPA TP  TPP   T E  + P  +++
Sbjct: 423 LAEAVGSP---PPAATPTPTPPTRKTPESFLGPNAALV 457

>PKAB_STRCO (P54740) Serine/threonine protein kinase pkaB (EC 2.7.11.1)|
          Length = 417

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -1

Query: 136 WLAAGGDEARGGAPEATRRGGVA 68
           WLA GGDE  GG P+ TR    A
Sbjct: 394 WLATGGDE-DGGGPQDTRNSAPA 415

>ABCC8_HUMAN (Q09428) ATP-binding cassette transporter sub-family C member 8|
           (Sulfonylurea receptor 1)
          Length = 1580

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 301 QKVQLLTFLSTLPESALSYGPSAETNMANSIEXRE 405
           QKV    F S+LP+S +   PS E   A  ++ R+
Sbjct: 730 QKVSGAVFWSSLPDSEIGEDPSPERETATDLDIRK 764

>MYST3_HUMAN (Q92794) Histone acetyltransferase MYST3 (EC 2.3.1.48) (EC 2.3.1.-)|
            (MYST protein 3) (MOZ, YBF2/SAS3, SAS2 and TIP60 protein
            3) (Runt-related transcription factor-binding protein 2)
            (Monocytic leukemia zinc finger protein) (Zinc finger
            protei
          Length = 2004

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +2

Query: 131  QPWTLPPAKTPQQTPPVC-ITAEKGIVPTPSIIFQLLEIGFTVGDVAVLPR 280
            QP   PP   PQQ PP+   +      P P +I ++ E G T G++++  R
Sbjct: 1686 QPQQPPPPPPPQQQPPLSQCSMNNSFTPAP-MIMEIPESGST-GNISIYER 1734


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.312    0.130    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,669,616
Number of Sequences: 219361
Number of extensions: 1008553
Number of successful extensions: 2509
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2505
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 1354661664
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)