ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl47a05 |
|---|---|
| Clone Library Name | barley_pub |
>YC47_SCHPO (O14053) Hypothetical WD-repeat protein C1672.07 in chromosome III| Length = 902 Score = 74.3 bits (181), Expect = 6e-14 Identities = 36/85 (42%), Positives = 51/85 (60%) Frame = +3 Query: 132 IFEPFRAIGYITTGGVPFSLQRLGTETFVTVSVGKAFHVYNCAKLTLVLAGPQLPKKIRA 311 I+ PFR+IG+++ VPF ++ GT VT SVG F Y+C KL L+ G QL K+I Sbjct: 23 IYAPFRSIGHVSNA-VPFDIEARGTHFLVTTSVGNTFQTYDCEKLNLLFVGKQLDKEITC 81 Query: 312 LASFKEYTFAAYGSDIAVFXRTDLV 386 L SFK++ A GS I + R ++ Sbjct: 82 LKSFKDFMLVAAGSKIFAYKRGKII 106
>YL409_YEAST (Q06078) Hypothetical 104.8 kDa Trp-Asp repeats-containing protein| in RPL31B-VIP1 intergenic region Length = 939 Score = 56.2 bits (134), Expect = 2e-08 Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 1/82 (1%) Frame = +3 Query: 132 IFEPFRAIGYITTGGVPFSLQRLGTETFVTVSVGKAFHVYNCAKLTLV-LAGPQLPKKIR 308 IF PFR IG ++ G VPF+ LG+ ++ VGK F +Y+ L L+ ++ + P I Sbjct: 23 IFSPFRIIGNVSNG-VPFATGTLGSTFYIVTCVGKTFQIYDANTLHLLFVSEKETPSSIV 81 Query: 309 ALASFKEYTFAAYGSDIAVFXR 374 AL++ Y +AAY + + ++ R Sbjct: 82 ALSAHFHYVYAAYENKVGIYKR 103
>WDR36_HUMAN (Q8NI36) WD repeat-containing protein 36 (T-cell activation WD| repeat-containing protein) (TA-WDRP) Length = 951 Score = 53.9 bits (128), Expect = 9e-08 Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 3/94 (3%) Frame = +3 Query: 132 IFEPFRAIGYITTGGVPFSLQ--RLGTETFVTVSVGKAFHVYNCAKLTLVLAGPQLPKKI 305 +F FRA+G + + +P ++ L +VT VGK+FH Y+ KL+LV +P+ I Sbjct: 69 LFAGFRALG-LFSNDIPHVVRFSALKRRFYVTTCVGKSFHTYDVQKLSLVAVSNSVPQDI 127 Query: 306 RALASFKEYTFAAYGSDIAVFXRT-DLVVTFTKH 404 +A+ FAAYG+ + F R ++V TF H Sbjct: 128 CCMAADGRLVFAAYGNVFSAFARNKEIVHTFKGH 161
>TLR9_HUMAN (Q9NR96) Toll-like receptor 9 precursor (CD289 antigen)| Length = 1032 Score = 30.0 bits (66), Expect = 1.4 Identities = 13/35 (37%), Positives = 16/35 (45%) Frame = +1 Query: 280 PDLNCPRRSAPLHPSRNTHLLRTEAISRFSXGLIW 384 P + CPR LHP +HL R E + L W Sbjct: 264 PCMECPRHFPQLHPDTFSHLSRLEGLVLKDSSLSW 298
>MOT2_MESAU (P53988) Monocarboxylate transporter 2 (MCT 2)| Length = 484 Score = 30.0 bits (66), Expect = 1.4 Identities = 23/73 (31%), Positives = 35/73 (47%) Frame = +3 Query: 132 IFEPFRAIGYITTGGVPFSLQRLGTETFVTVSVGKAFHVYNCAKLTLVLAGPQLPKKIRA 311 + E + IG+I G+ F+LQ T +GK F+ L +AG P + + Sbjct: 110 VLELYLTIGFIGGLGLAFNLQPALT------IIGKYFYRRRPMANGLAMAGS--PVFLSS 161 Query: 312 LASFKEYTFAAYG 350 LA F +Y F +YG Sbjct: 162 LAPFNQYLFNSYG 174
>TRUD_METMA (Q8Q0M2) Probable tRNA pseudouridine synthase D (EC 5.4.99.-)| (tRNA-uridine isomerase D) (tRNA pseudouridylate synthase D) Length = 438 Score = 28.1 bits (61), Expect = 5.2 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%) Frame = +3 Query: 162 ITTGGVP--FSLQRLGTETFVTVSVGKAFHVYNCAKLTLVLAGPQLPKK 302 + GGVP F +QR G+ VT VGKA N K L+ P++ Sbjct: 161 LAQGGVPNFFGIQRFGSVRPVTHLVGKAIVEGNFEKAALLYIAEPFPEE 209
>Y111_METJA (Q57575) Hypothetical protein MJ0111| Length = 396 Score = 28.1 bits (61), Expect = 5.2 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = +3 Query: 174 GVPFSLQRLGTETFVTVSVGKAFH 245 GVPF L G + F V+ GKA+H Sbjct: 141 GVPFELTLEGAKKFAEVAKGKAYH 164
>SYN_XYLFT (Q87A82) Asparaginyl-tRNA synthetase (EC 6.1.1.22)| (Asparagine--tRNA ligase) (AsnRS) Length = 466 Score = 28.1 bits (61), Expect = 5.2 Identities = 16/40 (40%), Positives = 19/40 (47%) Frame = +3 Query: 168 TGGVPFSLQRLGTETFVTVSVGKAFHVYNCAKLTLVLAGP 287 TGG+ FS G ETF+TVS Y A + GP Sbjct: 192 TGGIDFSHDFFGKETFLTVSGQLNVEAYALALSKVYTFGP 231
>SYN_XYLFA (Q9PAF5) Asparaginyl-tRNA synthetase (EC 6.1.1.22)| (Asparagine--tRNA ligase) (AsnRS) Length = 466 Score = 28.1 bits (61), Expect = 5.2 Identities = 16/40 (40%), Positives = 19/40 (47%) Frame = +3 Query: 168 TGGVPFSLQRLGTETFVTVSVGKAFHVYNCAKLTLVLAGP 287 TGG+ FS G ETF+TVS Y A + GP Sbjct: 192 TGGIDFSHDFFGKETFLTVSGQLNVEAYALALSKVYTFGP 231
>TM11D_RAT (Q8VHJ4) Transmembrane protease, serine 11D precursor (EC 3.4.21.-)| (Airway trypsin-like protease) (AT) (Adrenal secretory serine protease) (AsP) [Contains: Transmembrane protease, serine 11D non-catalytic chain; Transmembrane protease, serine Length = 417 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/40 (37%), Positives = 24/40 (60%) Frame = +3 Query: 285 PQLPKKIRALASFKEYTFAAYGSDIAVFXRTDLVVTFTKH 404 P+L ++RA+ + EY +DIAV + D VTFT++ Sbjct: 248 PRLRVRVRAILAHAEYNSITRDNDIAV-VQLDRPVTFTRN 286
>SYN_YERPS (Q66CG7) Asparaginyl-tRNA synthetase (EC 6.1.1.22)| (Asparagine--tRNA ligase) (AsnRS) Length = 466 Score = 27.3 bits (59), Expect = 8.9 Identities = 16/40 (40%), Positives = 18/40 (45%) Frame = +3 Query: 168 TGGVPFSLQRLGTETFVTVSVGKAFHVYNCAKLTLVLAGP 287 TG V FS G E F+TVS Y CA + GP Sbjct: 192 TGAVDFSEDFFGKEAFLTVSGQLNGETYACALSKVYTFGP 231
>SYN_YERPE (P58697) Asparaginyl-tRNA synthetase (EC 6.1.1.22)| (Asparagine--tRNA ligase) (AsnRS) Length = 466 Score = 27.3 bits (59), Expect = 8.9 Identities = 16/40 (40%), Positives = 18/40 (45%) Frame = +3 Query: 168 TGGVPFSLQRLGTETFVTVSVGKAFHVYNCAKLTLVLAGP 287 TG V FS G E F+TVS Y CA + GP Sbjct: 192 TGAVDFSEDFFGKEAFLTVSGQLNGETYACALSKVYTFGP 231 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 36,730,872 Number of Sequences: 219361 Number of extensions: 549801 Number of successful extensions: 1513 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 1493 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1509 length of database: 80,573,946 effective HSP length: 110 effective length of database: 56,444,236 effective search space used: 1354661664 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
