ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl47a06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AE006466.1| Homo sapiens 16p13.3 sequence section 5 of 8 42 0.75
2gb|AY081193.1| Homo sapiens somatostatin receptor subtype 5 gene... 42 0.75
3gb|AC025441.6| Homo sapiens chromosome 5 clone CTD-2014E14, comp... 42 0.75
4gb|AC034231.6|AC034231 Homo sapiens chromosome 5 clone CTD-2203K... 42 0.75
5gb|AC009041.10| Homo sapiens chromosome 16 clone RP11-161M6, com... 42 0.75
6emb|AL031706.17|HS305F3 Human DNA sequence from clone LA16-305F3... 42 0.75
7gb|AF022985.2| Caenorhabditis elegans cosmid T15B7, complete seq... 40 3.0
8gb|BC067052.1| Mus musculus CXXC finger 4, mRNA (cDNA clone MGC:... 40 3.0
9gb|BC016400.1| Mus musculus heat shock protein 1 (chaperonin), m... 40 3.0
10gb|AC151903.3| Mus musculus BAC clone RP23-216I7 from chromosome... 40 3.0
11gb|AC122889.3| Mus musculus BAC clone RP23-93M3 from chromosome ... 40 3.0
12gb|AC122479.3| Mus musculus BAC clone RP24-344E5 from chromosome... 40 3.0
13emb|AL136124.10| Human DNA sequence from clone RP4-792D7 on chro... 40 3.0
14dbj|AK143882.1| Mus musculus adult male kidney cDNA, RIKEN full-... 40 3.0
15dbj|AK146831.1| Mus musculus 17 days embryo heart cDNA, RIKEN fu... 40 3.0
16ref|NM_010477.2| Mus musculus heat shock protein 1 (chaperonin) ... 40 3.0
17dbj|AK088844.1| Mus musculus 2 days neonate thymus thymic cells ... 40 3.0
18ref|NM_072337.2| Caenorhabditis elegans T15B7.3 (collagen) mRNA,... 40 3.0
19dbj|AK189577.1| Mus musculus cDNA, clone:Y0G0149K17, strand:plus... 40 3.0
20gb|AC108391.14| Mus musculus chromosome 1, clone RP23-16N14, com... 40 3.0 
>gb|AE006466.1| Homo sapiens 16p13.3 sequence section 5 of 8
          Length = 265786

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 139  gctctcctgccgccgccgggg 159
            |||||||||||||||||||||
Sbjct: 8484 gctctcctgccgccgccgggg 8504
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>gb|AY081193.1| Homo sapiens somatostatin receptor subtype 5 gene, exons 1a and 1 and
            complete cds
          Length = 10494

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 139  gctctcctgccgccgccgggg 159
            |||||||||||||||||||||
Sbjct: 1979 gctctcctgccgccgccgggg 1999
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>gb|AC025441.6| Homo sapiens chromosome 5 clone CTD-2014E14, complete sequence
          Length = 56752

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 23    aaggtttctttttgagggtga 43
             |||||||||||||||||||||
Sbjct: 20248 aaggtttctttttgagggtga 20268
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>gb|AC034231.6|AC034231 Homo sapiens chromosome 5 clone CTD-2203K17, complete sequence
          Length = 34136

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 23    aaggtttctttttgagggtga 43
             |||||||||||||||||||||
Sbjct: 32412 aaggtttctttttgagggtga 32432
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>gb|AC009041.10| Homo sapiens chromosome 16 clone RP11-161M6, complete sequence
          Length = 162342

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 139    gctctcctgccgccgccgggg 159
              |||||||||||||||||||||
Sbjct: 143343 gctctcctgccgccgccgggg 143363
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>emb|AL031706.17|HS305F3 Human DNA sequence from clone LA16-305F3 on chromosome 16. Contains
            two putative CpG islands, complete sequence
          Length = 13012

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 139  gctctcctgccgccgccgggg 159
            |||||||||||||||||||||
Sbjct: 7099 gctctcctgccgccgccgggg 7119
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>gb|AF022985.2| Caenorhabditis elegans cosmid T15B7, complete sequence
          Length = 36752

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 119   gctcgccgccgtgttgccgt 138
             ||||||||||||||||||||
Sbjct: 25989 gctcgccgccgtgttgccgt 26008
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>gb|BC067052.1| Mus musculus CXXC finger 4, mRNA (cDNA clone MGC:86040
           IMAGE:30619087), complete cds
          Length = 1313

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 143 tcctgccgccgccggggaag 162
           ||||||||||||||||||||
Sbjct: 554 tcctgccgccgccggggaag 535
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>gb|BC016400.1| Mus musculus heat shock protein 1 (chaperonin), mRNA (cDNA clone
           MGC:6709 IMAGE:3585270), complete cds
          Length = 2232

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 136 cgtgctctcctgccgccgcc 155
           ||||||||||||||||||||
Sbjct: 15  cgtgctctcctgccgccgcc 34
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>gb|AC151903.3| Mus musculus BAC clone RP23-216I7 from chromosome 14, complete sequence
          Length = 232727

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 17    gaggataaggtttctttttg 36
             ||||||||||||||||||||
Sbjct: 78970 gaggataaggtttctttttg 78989
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>gb|AC122889.3| Mus musculus BAC clone RP23-93M3 from chromosome 1, complete sequence
          Length = 125681

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 136    cgtgctctcctgccgccgcc 155
              ||||||||||||||||||||
Sbjct: 123659 cgtgctctcctgccgccgcc 123678
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>gb|AC122479.3| Mus musculus BAC clone RP24-344E5 from chromosome 14, complete sequence
          Length = 185254

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 17    gaggataaggtttctttttg 36
             ||||||||||||||||||||
Sbjct: 16049 gaggataaggtttctttttg 16030
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>emb|AL136124.10| Human DNA sequence from clone RP4-792D7 on chromosome 1q42.2-43
             Contains the 5' end of the TARBP1 gene for TAR (HIV) RNA
             binding protein 1 and a CpG island, complete sequence
          Length = 104632

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 24    aggtttctttttgagggtga 43
             ||||||||||||||||||||
Sbjct: 42726 aggtttctttttgagggtga 42745
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>dbj|AK143882.1| Mus musculus adult male kidney cDNA, RIKEN full-length enriched
           library, clone:F520001E04 product:heat shock protein 1
           (chaperonin), full insert sequence
          Length = 2235

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 136 cgtgctctcctgccgccgcc 155
           ||||||||||||||||||||
Sbjct: 34  cgtgctctcctgccgccgcc 53
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>dbj|AK146831.1| Mus musculus 17 days embryo heart cDNA, RIKEN full-length enriched
           library, clone:I920062F22 product:heat shock protein 1
           (chaperonin), full insert sequence
          Length = 2283

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 136 cgtgctctcctgccgccgcc 155
           ||||||||||||||||||||
Sbjct: 81  cgtgctctcctgccgccgcc 100
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>ref|NM_010477.2| Mus musculus heat shock protein 1 (chaperonin) (Hspd1), mRNA
          Length = 2246

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 136 cgtgctctcctgccgccgcc 155
           ||||||||||||||||||||
Sbjct: 43  cgtgctctcctgccgccgcc 62
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>dbj|AK088844.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
           full-length enriched library, clone:E430028C20
           product:heat shock protein, 60 kDa, full insert sequence
          Length = 2246

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 136 cgtgctctcctgccgccgcc 155
           ||||||||||||||||||||
Sbjct: 43  cgtgctctcctgccgccgcc 62
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>ref|NM_072337.2| Caenorhabditis elegans T15B7.3 (collagen) mRNA, complete cds
          Length = 996

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 119 gctcgccgccgtgttgccgt 138
           ||||||||||||||||||||
Sbjct: 904 gctcgccgccgtgttgccgt 923
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>dbj|AK189577.1| Mus musculus cDNA, clone:Y0G0149K17, strand:plus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000027123, based on BLAT search
          Length = 96

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 136 cgtgctctcctgccgccgcc 155
           ||||||||||||||||||||
Sbjct: 22  cgtgctctcctgccgccgcc 41
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>gb|AC108391.14| Mus musculus chromosome 1, clone RP23-16N14, complete sequence
          Length = 257730

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 136    cgtgctctcctgccgccgcc 155
              ||||||||||||||||||||
Sbjct: 210376 cgtgctctcctgccgccgcc 210357


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,026,575
Number of Sequences: 3902068
Number of extensions: 2026575
Number of successful extensions: 30098
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30074
Number of HSP's gapped (non-prelim): 24
length of query: 232
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 210
effective length of database: 17,147,199,772
effective search space: 3600911952120
effective search space used: 3600911952120
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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