ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl53a08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009347.1| Triticum aestivum clone wlm96.pk0001.b7:fis, full... 297 2e-77
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 194 2e-46
3gb|AC137073.2| Genomic sequence for Oryza sativa, Nipponbare str... 194 2e-46
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 194 2e-46
5dbj|AK068938.1| Oryza sativa (japonica cultivar-group) cDNA clon... 151 2e-33
6gb|AY109428.1| Zea mays CL501_1 mRNA sequence 125 1e-25
7ref|NM_117209.3| Arabidopsis thaliana clathrin binding AT4G11380... 66 1e-07
8gb|BT010362.1| Arabidopsis thaliana At4g11380 mRNA, complete cds 66 1e-07
9gb|AY093155.1| Arabidopsis thaliana beta-adaptin-like protein (A... 66 1e-07
10emb|BX828065.1|CNS0A2BU Arabidopsis thaliana Full-length cDNA Co... 66 1e-07
11gb|AF216386.1|AF216386 Arabidopsis thaliana beta-adaptin-like pr... 66 1e-07
12emb|AL161531.2|ATCHRIV31 Arabidopsis thaliana DNA chromosome 4, ... 64 4e-07
13emb|AL096882.2|ATF8L21 Arabidopsis thaliana DNA chromosome 4, BA... 64 4e-07
14gb|BT016054.1| Drosophila melanogaster LP17054 full insert cDNA 56 1e-04
15ref|NM_078691.2| Drosophila melanogaster Adaptin CG12532-RA (Bap... 56 1e-04
16gb|AC010671.8|AC010671 Drosophila melanogaster, chromosome X, re... 56 1e-04
17gb|AC012165.6|AC012165 Drosophila melanogaster, chromosome X, re... 56 1e-04
18gb|AE003513.3| Drosophila melanogaster chromosome X, section 65 ... 56 1e-04
19emb|X75910.1|DMBA D.melanogaster mRNA for beta-adaptin 56 1e-04
20ref|NM_118475.3| Arabidopsis thaliana clathrin binding AT4G23460... 52 0.002
21gb|AY065000.1| Arabidopsis thaliana AT4g23460/F16G20_160 mRNA, c... 52 0.002
22gb|AF216387.1|AF216387 Arabidopsis thaliana beta-adaptin-like pr... 52 0.002
23emb|AL161559.2|ATCHRIV59 Arabidopsis thaliana DNA chromosome 4, ... 50 0.007
24emb|AL031326.1|ATF16G20 Arabidopsis thaliana DNA chromosome 4, B... 50 0.007
25gb|AC135795.21| Medicago truncatula clone mth2-28g10, complete s... 50 0.007
26gb|AC150889.3| Medicago truncatula chromosome 7 BAC clone mte1-6... 50 0.007
27emb|AL939121.1|SCO939121 Streptomyces coelicolor A3(2) complete ... 42 1.6
28gb|AF367600.1| Merxmuellera disticha internal transcribed spacer... 42 1.6
29emb|BX548058.9| Zebrafish DNA sequence from clone CH211-181H11 i... 42 1.6
30emb|BX548060.7| Zebrafish DNA sequence from clone CH211-117I10 i... 42 1.6
31gb|AY819719.1| Sugarcane mosaic virus isolate FER-1 capsid prote... 40 6.3
32gb|AY819718.1| Sugarcane mosaic virus isolate PIR-2 capsid prote... 40 6.3
33gb|AY643844.1|AY643842S3 Hordeum vulgare subsp. vulgare clones B... 40 6.3
34gb|AC154486.2| Mus musculus BAC clone RP24-118H13 from chromosom... 40 6.3
35gb|DQ227694.1| Sugarcane mosaic virus isolate GX-1 polyprotein g... 40 6.3
36ref|XM_473310.1| Oryza sativa (japonica cultivar-group), predic... 40 6.3
37ref|XM_426433.1| PREDICTED: Gallus gallus similar to Butyrate re... 40 6.3
38gb|AY590778.1| Sugarcane mosaic virus polyprotein mRNA, partial cds 40 6.3
39gb|AC118540.15| Mus musculus strain 129/SvJ clone mgs1-169d12 ma... 40 6.3
40ref|XM_755086.1| Ustilago maydis 521 hypothetical protein (UM040... 40 6.3
41gb|AC121842.3| Mus musculus BAC clone RP24-80L24 from chromosome... 40 6.3
42gb|AC127283.2| Mus musculus BAC clone RP23-323E20 from chromosom... 40 6.3
43gb|DQ141605.1| Sugarcane mosaic virus polyprotein mRNA, partial cds 40 6.3
44emb|AM040436.1| Sugarcane mosaic virus partial cp gene for coat ... 40 6.3
45gb|AC096051.7| Rattus norvegicus 10 BAC CH230-21G1 (Children's H... 40 6.3
46gb|AC166246.1| Mus musculus BAC clone RP24-80F22 from chromosome... 40 6.3
47emb|AL662998.4|OSJN00196 Oryza sativa genomic DNA, chromosome 4,... 40 6.3
48emb|AJ278405.1|SMO278405 Sugarcane mosaic virus genomic RNA for ... 40 6.3
49gb|AC158645.6| Mus musculus 6 BAC RP23-435I16 (Roswell Park Canc... 40 6.3
50gb|DQ438949.1| Sugarcane mosaic virus isolate KhzQ86 polyprotein... 40 6.3
51gb|AC020912.6| Homo sapiens chromosome 19 clone CTD-2583G20, com... 40 6.3
52gb|U78045.1|HSU78045 Human collagenase and stromelysin genes, co... 40 6.3
53gb|DQ369960.1| Sugarcane mosaic virus isolate KhzL66 polyprotein... 40 6.3
54gb|AY836523.1| Sugarcane mosaic virus strain E polyprotein gene,... 40 6.3
55dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
56dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
57dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
58gb|AY241923.1| Sugarcane mosaic virus nonfunctional polyprotein ... 40 6.3
59gb|AF090447.2| Zea mays 22 kDa alpha zein gene cluster, complete... 40 6.3
60dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 6.3
61gb|AY943294.1| Hordeum vulgare subsp. vulgare clone BAC 673I14, ... 40 6.3
62gb|DQ343236.1| Sugarcane mosaic virus nonfunctional coat protein... 40 6.3
63dbj|AP003456.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
64gb|AY953351.1| Sugarcane mosaic virus strain D polyprotein mRNA,... 40 6.3
65emb|AJ491974.1|SMO491974 Sugarcane mosaic virus partial cp gene ... 40 6.3
66emb|AJ491973.1|SMO491973 Sugarcane mosaic virus partial cp gene ... 40 6.3
67emb|AJ491972.1|SMO491972 Sugarcane mosaic virus partial cp gene ... 40 6.3
68emb|AJ491970.1|SMO491970 Sugarcane mosaic virus partial cp gene ... 40 6.3
69emb|AJ491969.1|SMO491969 Sugarcane mosaic virus partial cp gene ... 40 6.3
70emb|AJ491968.1|SMO491968 Sugarcane mosaic virus partial cp gene ... 40 6.3
71emb|AJ491967.1|SMO491967 Sugarcane mosaic virus partial cp gene ... 40 6.3
72emb|AJ491966.1|SMO491966 Sugarcane mosaic virus partial cp gene ... 40 6.3
73emb|AJ491965.1|SMO491965 Sugarcane mosaic virus partial cp gene ... 40 6.3
74emb|AJ491964.1|SMO491964 Sugarcane mosaic virus partial cp gene ... 40 6.3
75emb|AJ491963.1|SMO491963 Sugarcane mosaic virus partial cp gene ... 40 6.3
76emb|AJ491959.1|SMO491959 Sugarcane mosaic virus partial cp gene ... 40 6.3
77emb|AJ491956.1|SMO491956 Sugarcane mosaic virus partial cp gene ... 40 6.3
78emb|AJ491955.1|SMO491955 Sugarcane mosaic virus partial cp gene ... 40 6.3
79emb|AJ491954.1|SMO491954 Sugarcane mosaic virus partial cp gene ... 40 6.3
80emb|AJ491953.1|SMO491953 Sugarcane mosaic virus partial cp gene ... 40 6.3
81emb|AJ491952.1|SMO491952 Sugarcane mosaic virus partial cp gene ... 40 6.3
82emb|AJ491950.1|SMO491950 Sugarcane mosaic virus partial cp gene ... 40 6.3
83emb|AJ491949.1|SMO491949 Sugarcane mosaic virus partial cp gene ... 40 6.3
84emb|AJ491948.1|SMO491948 Sugarcane mosaic virus partial cp gene ... 40 6.3
85emb|AJ491943.1|SMO491943 Sugarcane mosaic virus partial cp gene ... 40 6.3
86dbj|AP005628.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
87dbj|AP005464.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
88dbj|AK068250.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.3
89gb|AC154040.7| Mus musculus 10 BAC RP23-348E15 (Roswell Park Can... 40 6.3
90gb|DQ316252.1| Sugarcane mosaic virus isolate wd-sg polyprotein ... 40 6.3
91gb|DQ316251.1| Sugarcane mosaic virus isolate wd-dz polyprotein ... 40 6.3
92gb|DQ316250.1| Sugarcane mosaic virus isolate so-bl6 polyprotein... 40 6.3
93gb|DQ316249.1| Sugarcane mosaic virus isolate so-bl5 polyprotein... 40 6.3
94gb|DQ316248.1| Sugarcane mosaic virus isolate so-bl4 polyprotein... 40 6.3
95gb|DQ316247.1| Sugarcane mosaic virus isolate so-bl2 polyprotein... 40 6.3
96gb|DQ316244.1| Sugarcane mosaic virus isolate sh-wy polyprotein ... 40 6.3
97gb|DQ316243.1| Sugarcane mosaic virus isolate sh-sx polyprotein ... 40 6.3
98gb|DQ316242.1| Sugarcane mosaic virus isolate sh-nn polyprotein ... 40 6.3
99gb|DQ316240.1| Sugarcane mosaic virus isolate sh-hp2 polyprotein... 40 6.3
100gb|DQ316239.1| Sugarcane mosaic virus isolate sh-hp1 polyprotein... 40 6.3
101gb|DQ316238.1| Sugarcane mosaic virus isolate sh-gz4 polyprotein... 40 6.3
102gb|DQ316236.1| Sugarcane mosaic virus isolate sh-gz2 polyprotein... 40 6.3
103gb|DQ316235.1| Sugarcane mosaic virus isolate sh-gz1 polyprotein... 40 6.3
104gb|DQ316234.1| Sugarcane mosaic virus isolate sh-dz polyprotein ... 40 6.3
105gb|DQ316232.1| Sugarcane mosaic virus isolate mz-gz2 polyprotein... 40 6.3
106gb|AF006738.1|AF006738 Sugarcane mosaic virus coat protein gene,... 40 6.3
107gb|AF006737.1|AF006737 Sugarcane mosaic virus coat protein gene,... 40 6.3
108gb|AF006736.1|AF006736 Sugarcane mosaic virus coat protein gene,... 40 6.3
109gb|AF006735.1|AF006735 Sugarcane mosaic virus coat protein gene,... 40 6.3
110gb|AF006733.1|AF006733 Sugarcane mosaic virus coat protein gene,... 40 6.3
111gb|AF006732.1|AF006732 Sugarcane mosaic virus coat protein gene,... 40 6.3
112gb|AF006731.1|AF006731 Sugarcane mosaic virus coat protein gene,... 40 6.3
113gb|AF006730.1|AF006730 Sugarcane mosaic virus coat protein gene,... 40 6.3
114gb|AF006729.1|AF006729 Sugarcane mosaic virus coat protein gene,... 40 6.3
115gb|AF006728.1|AF006728 Sugarcane mosaic virus coat protein gene,... 40 6.3
116gb|U57354.1|SMU57354 Sugarcane mosaic virus strain A polyprotein... 40 6.3
117gb|U57357.1|SMU57357 Sugarcane mosaic virus strain E polyprotein... 40 6.3
118gb|U57356.1|SMU57356 Sugarcane mosaic virus strain D polyprotein... 40 6.3
119gb|M21778.1|PIJ101CG Plasmid pIJ101 (from S.lividans), complete ... 40 6.3
120dbj|D00948.1|MSCCP Sugarcane mosaic virus mRNA for coat protein,... 40 6.3 
>gb|BT009347.1| Triticum aestivum clone wlm96.pk0001.b7:fis, full insert mRNA
           sequence
          Length = 2214

 Score =  297 bits (150), Expect = 2e-77
 Identities = 215/236 (91%), Gaps = 8/236 (3%)
 Strand = Plus / Plus

                                                                       
Query: 88  tccaatcccatcccatcgcgcagacaggcaggc-------cgcccgccaccgcgcgc-at 139
           |||||||||||||||| |||||| |||||||||       || ||||| |||||||| | 
Sbjct: 29  tccaatcccatcccattgcgcaggcaggcaggcaggccgccgaccgccgccgcgcgcgag 88

                                                                       
Query: 140 atcggaggcctccatcgcgaaccccgggctccgcagccggaggcggtgaccggtgtgtat 199
           |||||| ||||||| | ||| |||| |||||||||||||||||||| |||||||| || |
Sbjct: 89  atcggacgcctccaccacgaccccccggctccgcagccggaggcggcgaccggtgcgtgt 148

                                                                       
Query: 200 ttggcaggtaggctcgccggggcgatatgagcgggcacgactccaagtacttctccacca 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 ttggcaggtaggctcgccggggcgatatgagcgggcacgactccaagtacttctccacca 208

                                                                   
Query: 260 ccaaaaagggggagatccccgagctcaaggaggagctcaactcccagtacaaggac 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 ccaaaaagggggagatccccgagctcaaggaggagctcaactcccagtacaaggac 264
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  194 bits (98), Expect = 2e-46
 Identities = 104/106 (98%)
 Strand = Plus / Minus

                                                                            
Query: 208      taggctcgccggggcgatatgagcgggcacgactccaagtacttctccaccaccaaaaag 267
                ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 13567353 taggctcgccggggcgagatgagcgggcacgactccaagtacttctccaccaccaagaag 13567294

                                                              
Query: 268      ggggagatccccgagctcaaggaggagctcaactcccagtacaagg 313
                ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13567293 ggggagatccccgagctcaaggaggagctcaactcccagtacaagg 13567248
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>gb|AC137073.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBb0005A11, from chromosome 3, complete sequence
          Length = 168219

 Score =  194 bits (98), Expect = 2e-46
 Identities = 104/106 (98%)
 Strand = Plus / Minus

                                                                          
Query: 208    taggctcgccggggcgatatgagcgggcacgactccaagtacttctccaccaccaaaaag 267
              ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 127244 taggctcgccggggcgagatgagcgggcacgactccaagtacttctccaccaccaagaag 127185

                                                            
Query: 268    ggggagatccccgagctcaaggaggagctcaactcccagtacaagg 313
              ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127184 ggggagatccccgagctcaaggaggagctcaactcccagtacaagg 127139
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  194 bits (98), Expect = 2e-46
 Identities = 104/106 (98%)
 Strand = Plus / Minus

                                                                            
Query: 208      taggctcgccggggcgatatgagcgggcacgactccaagtacttctccaccaccaaaaag 267
                ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 13563228 taggctcgccggggcgagatgagcgggcacgactccaagtacttctccaccaccaagaag 13563169

                                                              
Query: 268      ggggagatccccgagctcaaggaggagctcaactcccagtacaagg 313
                ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13563168 ggggagatccccgagctcaaggaggagctcaactcccagtacaagg 13563123
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>dbj|AK068938.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013169D19, full
           insert sequence
          Length = 2979

 Score =  151 bits (76), Expect = 2e-33
 Identities = 79/80 (98%)
 Strand = Plus / Plus

                                                                       
Query: 235 cacgactccaagtacttctccaccaccaaaaagggggagatccccgagctcaaggaggag 294
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 34  cacgactccaagtacttctccaccaccaagaagggggagatccccgagctcaaggaggag 93

                               
Query: 295 ctcaactcccagtacaagga 314
           ||||||||||||||||||||
Sbjct: 94  ctcaactcccagtacaagga 113
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>gb|AY109428.1| Zea mays CL501_1 mRNA sequence
          Length = 3187

 Score =  125 bits (63), Expect = 1e-25
 Identities = 82/90 (91%)
 Strand = Plus / Minus

                                                                        
Query: 226  atgagcgggcacgactccaagtacttctccaccaccaaaaagggggagatccccgagctc 285
            ||||||||||||||||||||||||||||| |||||||| ||     ||||||||||||||
Sbjct: 3075 atgagcgggcacgactccaagtacttctctaccaccaagaannnnnagatccccgagctc 3016

                                          
Query: 286  aaggaggagctcaactcccagtacaaggac 315
            ||||||||||||||||||||||| ||||||
Sbjct: 3015 aaggaggagctcaactcccagtataaggac 2986
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>ref|NM_117209.3| Arabidopsis thaliana clathrin binding AT4G11380 mRNA, complete cds
          Length = 3310

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 75/89 (84%)
 Strand = Plus / Plus

                                                                       
Query: 226 atgagcgggcacgactccaagtacttctccaccaccaaaaagggggagatccccgagctc 285
           ||||| || ||||| || || ||||||||||| || || ||||| |||||||| ||||||
Sbjct: 101 atgagtggtcacgattcgaaatacttctccacgacgaagaagggagagatccctgagctc 160

                                        
Query: 286 aaggaggagctcaactcccagtacaagga 314
           ||||| ||||| || |||||||| |||||
Sbjct: 161 aaggaagagcttaattcccagtataagga 189
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>gb|BT010362.1| Arabidopsis thaliana At4g11380 mRNA, complete cds
          Length = 2685

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 75/89 (84%)
 Strand = Plus / Plus

                                                                       
Query: 226 atgagcgggcacgactccaagtacttctccaccaccaaaaagggggagatccccgagctc 285
           ||||| || ||||| || || ||||||||||| || || ||||| |||||||| ||||||
Sbjct: 1   atgagtggtcacgattcgaaatacttctccacgacgaagaagggagagatccctgagctc 60

                                        
Query: 286 aaggaggagctcaactcccagtacaagga 314
           ||||| ||||| || |||||||| |||||
Sbjct: 61  aaggaagagcttaattcccagtataagga 89
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>gb|AY093155.1| Arabidopsis thaliana beta-adaptin-like protein (At4g11380) mRNA,
           complete cds
          Length = 2972

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 75/89 (84%)
 Strand = Plus / Plus

                                                                       
Query: 226 atgagcgggcacgactccaagtacttctccaccaccaaaaagggggagatccccgagctc 285
           ||||| || ||||| || || ||||||||||| || || ||||| |||||||| ||||||
Sbjct: 82  atgagtggtcacgattcgaaatacttctccacgacgaagaagggagagatccctgagctc 141

                                        
Query: 286 aaggaggagctcaactcccagtacaagga 314
           ||||| ||||| || |||||||| |||||
Sbjct: 142 aaggaagagcttaattcccagtataagga 170
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>emb|BX828065.1|CNS0A2BU Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH4ZB04 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 2928

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 75/89 (84%)
 Strand = Plus / Plus

                                                                       
Query: 226 atgagcgggcacgactccaagtacttctccaccaccaaaaagggggagatccccgagctc 285
           ||||| || ||||| || || ||||||||||| || || ||||| |||||||| ||||||
Sbjct: 100 atgagtggtcacgattcgaaatacttctccacgacgaagaagggagagatccctgagctc 159

                                        
Query: 286 aaggaggagctcaactcccagtacaagga 314
           ||||| ||||| || |||||||| |||||
Sbjct: 160 aaggaagagcttaattcccagtataagga 188
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>gb|AF216386.1|AF216386 Arabidopsis thaliana beta-adaptin-like protein B mRNA, complete cds
          Length = 2939

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 75/89 (84%)
 Strand = Plus / Plus

                                                                       
Query: 226 atgagcgggcacgactccaagtacttctccaccaccaaaaagggggagatccccgagctc 285
           ||||| || ||||| || || ||||||||||| || || ||||| |||||||| ||||||
Sbjct: 42  atgagtggtcacgattcgaaatacttctccacgacgaagaagggagagatccctgagctc 101

                                        
Query: 286 aaggaggagctcaactcccagtacaagga 314
           ||||| ||||| || |||||||| |||||
Sbjct: 102 aaggaagagcttaattcccagtataagga 130
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>emb|AL161531.2|ATCHRIV31 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 31
          Length = 198301

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 74/88 (84%)
 Strand = Plus / Plus

                                                                          
Query: 226    atgagcgggcacgactccaagtacttctccaccaccaaaaagggggagatccccgagctc 285
              ||||| || ||||| || || ||||||||||| || || ||||| |||||||| ||||||
Sbjct: 164845 atgagtggtcacgattcgaaatacttctccacgacgaagaagggagagatccctgagctc 164904

                                          
Query: 286    aaggaggagctcaactcccagtacaagg 313
              ||||| ||||| || |||||||| ||||
Sbjct: 164905 aaggaagagcttaattcccagtataagg 164932
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>emb|AL096882.2|ATF8L21 Arabidopsis thaliana DNA chromosome 4, BAC clone F8L21 (ESSA project)
          Length = 98948

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 74/88 (84%)
 Strand = Plus / Plus

                                                                         
Query: 226   atgagcgggcacgactccaagtacttctccaccaccaaaaagggggagatccccgagctc 285
             ||||| || ||||| || || ||||||||||| || || ||||| |||||||| ||||||
Sbjct: 91839 atgagtggtcacgattcgaaatacttctccacgacgaagaagggagagatccctgagctc 91898

                                         
Query: 286   aaggaggagctcaactcccagtacaagg 313
             ||||| ||||| || |||||||| ||||
Sbjct: 91899 aaggaagagcttaattcccagtataagg 91926
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>gb|BT016054.1| Drosophila melanogaster LP17054 full insert cDNA
          Length = 3231

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                           
Query: 241 tccaagtacttctccaccaccaaaaagggggagatccccgagctcaag 288
           |||||||||||| |||||||||| ||||| ||||||  ||||||||||
Sbjct: 104 tccaagtacttcaccaccaccaagaagggcgagatcttcgagctcaag 151
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>ref|NM_078691.2| Drosophila melanogaster Adaptin CG12532-RA (Bap), mRNA
          Length = 3235

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                           
Query: 241 tccaagtacttctccaccaccaaaaagggggagatccccgagctcaag 288
           |||||||||||| |||||||||| ||||| ||||||  ||||||||||
Sbjct: 122 tccaagtacttcaccaccaccaagaagggcgagatcttcgagctcaag 169
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>gb|AC010671.8|AC010671 Drosophila melanogaster, chromosome X, region 18E-18F, BAC clone
              BACR33M08, complete sequence
          Length = 180263

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                              
Query: 241    tccaagtacttctccaccaccaaaaagggggagatccccgagctcaag 288
              |||||||||||| |||||||||| ||||| ||||||  ||||||||||
Sbjct: 128412 tccaagtacttcaccaccaccaagaagggcgagatcttcgagctcaag 128459
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>gb|AC012165.6|AC012165 Drosophila melanogaster, chromosome X, region 18F-18F, BAC clone
             BACR48P17, complete sequence
          Length = 176195

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                             
Query: 241   tccaagtacttctccaccaccaaaaagggggagatccccgagctcaag 288
             |||||||||||| |||||||||| ||||| ||||||  ||||||||||
Sbjct: 11772 tccaagtacttcaccaccaccaagaagggcgagatcttcgagctcaag 11819
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>gb|AE003513.3| Drosophila melanogaster chromosome X, section 65 of 74 of the complete
             sequence
          Length = 207432

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                             
Query: 241   tccaagtacttctccaccaccaaaaagggggagatccccgagctcaag 288
             |||||||||||| |||||||||| ||||| ||||||  ||||||||||
Sbjct: 31911 tccaagtacttcaccaccaccaagaagggcgagatcttcgagctcaag 31958
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>emb|X75910.1|DMBA D.melanogaster mRNA for beta-adaptin
          Length = 3217

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                           
Query: 241 tccaagtacttctccaccaccaaaaagggggagatccccgagctcaag 288
           |||||||||||| |||||||||| ||||| ||||||  ||||||||||
Sbjct: 100 tccaagtacttcaccaccaccaagaagggcgagatcttcgagctcaag 147
to top
>ref|NM_118475.3| Arabidopsis thaliana clathrin binding AT4G23460 mRNA, complete cds
          Length = 2962

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                             
Query: 265 aagggggagatccccgagctcaaggaggagctcaactcccagtacaagga 314
           ||||| |||||||| ||||||||||| ||||| || || |||||||||||
Sbjct: 92  aagggagagatccctgagctcaaggaagagctgaattcacagtacaagga 141
to top
>gb|AY065000.1| Arabidopsis thaliana AT4g23460/F16G20_160 mRNA, complete cds
          Length = 2955

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                             
Query: 265 aagggggagatccccgagctcaaggaggagctcaactcccagtacaagga 314
           ||||| |||||||| ||||||||||| ||||| || || |||||||||||
Sbjct: 92  aagggagagatccctgagctcaaggaagagctgaattcacagtacaagga 141
to top
>gb|AF216387.1|AF216387 Arabidopsis thaliana beta-adaptin-like protein C mRNA, partial cds
          Length = 2761

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                             
Query: 265 aagggggagatccccgagctcaaggaggagctcaactcccagtacaagga 314
           ||||| |||||||| ||||||||||| ||||| || || |||||||||||
Sbjct: 31  aagggagagatccctgagctcaaggaagagctgaattcacagtacaagga 80
to top
>emb|AL161559.2|ATCHRIV59 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 59
          Length = 199199

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                               
Query: 265    aagggggagatccccgagctcaaggaggagctcaactcccagtacaagg 313
              ||||| |||||||| ||||||||||| ||||| || || ||||||||||
Sbjct: 102441 aagggagagatccctgagctcaaggaagagctgaattcacagtacaagg 102393
to top
>emb|AL031326.1|ATF16G20 Arabidopsis thaliana DNA chromosome 4, BAC clone F16G20 (ESSAII
             project)
          Length = 97006

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                              
Query: 265   aagggggagatccccgagctcaaggaggagctcaactcccagtacaagg 313
             ||||| |||||||| ||||||||||| ||||| || || ||||||||||
Sbjct: 60909 aagggagagatccctgagctcaaggaagagctgaattcacagtacaagg 60861
to top
>gb|AC135795.21| Medicago truncatula clone mth2-28g10, complete sequence
          Length = 110937

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                              
Query: 236   acgactccaagtacttctccaccaccaaaaagggggagatccccgagct 284
             |||||||||||||||||||| |||| || ||||| || ||||| |||||
Sbjct: 11116 acgactccaagtacttctcccccacgaagaagggtgaaatccctgagct 11164
to top
>gb|AC150889.3| Medicago truncatula chromosome 7 BAC clone mte1-61j12, complete
             sequence
          Length = 116517

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                              
Query: 236   acgactccaagtacttctccaccaccaaaaagggggagatccccgagct 284
             |||||||||||||||||||| |||| || ||||| || ||||| |||||
Sbjct: 13047 acgactccaagtacttctcccccacgaagaagggtgaaatccctgagct 12999
to top
>emb|AL939121.1|SCO939121 Streptomyces coelicolor A3(2) complete genome; segment 18/29
          Length = 292100

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 174    agccggaggcggtgaccggtgtgta 198
              |||||| ||||||||||||||||||
Sbjct: 233754 agccgggggcggtgaccggtgtgta 233730
to top
>gb|AF367600.1| Merxmuellera disticha internal transcribed spacer 1, 5.8S ribosomal
           RNA gene and internal transcribed spacer 2, complete
           sequence
          Length = 597

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 114 ggcaggccgcccgccaccgcgcgca 138
           ||||||||| |||||||||||||||
Sbjct: 190 ggcaggccgaccgccaccgcgcgca 166
to top
>emb|BX548058.9| Zebrafish DNA sequence from clone CH211-181H11 in linkage group 18,
             complete sequence
          Length = 95339

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 404   agtgaaagcaggattaaatca 424
             |||||||||||||||||||||
Sbjct: 35829 agtgaaagcaggattaaatca 35849
to top
>emb|BX548060.7| Zebrafish DNA sequence from clone CH211-117I10 in linkage group 18,
             complete sequence
          Length = 120346

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 404   agtgaaagcaggattaaatca 424
             |||||||||||||||||||||
Sbjct: 28857 agtgaaagcaggattaaatca 28837
to top
>gb|AY819719.1| Sugarcane mosaic virus isolate FER-1 capsid protein (cp) gene,
           partial cds
          Length = 851

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 agctcaaggaggagctcaac 300
           ||||||||||||||||||||
Sbjct: 75  agctcaaggaggagctcaac 94
to top
>gb|AY819718.1| Sugarcane mosaic virus isolate PIR-2 capsid protein (cp) gene,
           partial cds
          Length = 886

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 agctcaaggaggagctcaac 300
           ||||||||||||||||||||
Sbjct: 75  agctcaaggaggagctcaac 94
to top
>gb|AY643844.1|AY643842S3 Hordeum vulgare subsp. vulgare clones BAC 799C8 and 122A5 hardness
             locus region
          Length = 160897

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 256   accaccaaaaagggggagat 275
             ||||||||||||||||||||
Sbjct: 38218 accaccaaaaagggggagat 38199
to top
>gb|AC154486.2| Mus musculus BAC clone RP24-118H13 from chromosome 17, complete
             sequence
          Length = 197387

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 306   gtacaaggactgggttatat 325
             ||||||||||||||||||||
Sbjct: 30668 gtacaaggactgggttatat 30649
to top
>gb|DQ227694.1| Sugarcane mosaic virus isolate GX-1 polyprotein gene, partial cds
          Length = 906

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 agctcaaggaggagctcaac 300
           ||||||||||||||||||||
Sbjct: 93  agctcaaggaggagctcaac 112
to top
>ref|XM_473310.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 609

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 17  ctccctcccgatctgtctga 36
           ||||||||||||||||||||
Sbjct: 364 ctccctcccgatctgtctga 383
to top
>ref|XM_426433.1| PREDICTED: Gallus gallus similar to Butyrate response factor 1
           (TIS11B protein) (EGF-inducible protein CMG1)
           (LOC428877), mRNA
          Length = 1326

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 118 ggccgcccgccaccgcgcgc 137
           ||||||||||||||||||||
Sbjct: 877 ggccgcccgccaccgcgcgc 858
to top
>gb|AY590778.1| Sugarcane mosaic virus polyprotein mRNA, partial cds
          Length = 1812

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 agctcaaggaggagctcaac 300
           ||||||||||||||||||||
Sbjct: 717 agctcaaggaggagctcaac 736
to top
>gb|AC118540.15| Mus musculus strain 129/SvJ clone mgs1-169d12 map 3, complete sequence
          Length = 191014

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 396   ggcatttcagtgaaagcagg 415
             ||||||||||||||||||||
Sbjct: 99572 ggcatttcagtgaaagcagg 99553
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>ref|XM_755086.1| Ustilago maydis 521 hypothetical protein (UM04032.1) partial mRNA
          Length = 2547

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 282  gctcaaggaggagctcaact 301
            ||||||||||||||||||||
Sbjct: 993  gctcaaggaggagctcaact 1012
to top
>gb|AC121842.3| Mus musculus BAC clone RP24-80L24 from chromosome 3, complete sequence
          Length = 173273

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 298   aactcccagtacaaggactgggttatat 325
             |||| |||||||||||||| ||||||||
Sbjct: 88482 aacttccagtacaaggactaggttatat 88455
to top
>gb|AC127283.2| Mus musculus BAC clone RP23-323E20 from chromosome 3, complete sequence
          Length = 210014

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 396    ggcatttcagtgaaagcagg 415
              ||||||||||||||||||||
Sbjct: 127940 ggcatttcagtgaaagcagg 127921
to top
>gb|DQ141605.1| Sugarcane mosaic virus polyprotein mRNA, partial cds
          Length = 2116

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 281  agctcaaggaggagctcaac 300
            ||||||||||||||||||||
Sbjct: 1950 agctcaaggaggagctcaac 1969
to top
>emb|AM040436.1| Sugarcane mosaic virus partial cp gene for coat protein, genomic
           RNA
          Length = 888

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 agctcaaggaggagctcaac 300
           ||||||||||||||||||||
Sbjct: 75  agctcaaggaggagctcaac 94
to top
>gb|AC096051.7| Rattus norvegicus 10 BAC CH230-21G1 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 216194

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 250   ttctccaccaccaaaaaggg 269
             ||||||||||||||||||||
Sbjct: 73276 ttctccaccaccaaaaaggg 73257
to top
>gb|AC166246.1| Mus musculus BAC clone RP24-80F22 from chromosome 17, complete sequence
          Length = 194452

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 306    gtacaaggactgggttatat 325
              ||||||||||||||||||||
Sbjct: 165413 gtacaaggactgggttatat 165394
to top
>emb|AL662998.4|OSJN00196 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0020O11,
             complete sequence
          Length = 113677

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 17    ctccctcccgatctgtctga 36
             ||||||||||||||||||||
Sbjct: 87504 ctccctcccgatctgtctga 87523
to top
>emb|AJ278405.1|SMO278405 Sugarcane mosaic virus genomic RNA for polyprotein (vp gene), strain
            A, isolate Brisbane
          Length = 9589

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 281  agctcaaggaggagctcaac 300
            ||||||||||||||||||||
Sbjct: 8472 agctcaaggaggagctcaac 8491
to top
>gb|AC158645.6| Mus musculus 6 BAC RP23-435I16 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 177739

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 45    actctcgcacgcacgcacac 64
             ||||||||||||||||||||
Sbjct: 70004 actctcgcacgcacgcacac 70023
to top
>gb|DQ438949.1| Sugarcane mosaic virus isolate KhzQ86 polyprotein gene, partial
           cds; and 3' UTR
          Length = 1815

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 agctcaaggaggagctcaac 300
           ||||||||||||||||||||
Sbjct: 717 agctcaaggaggagctcaac 736
to top
>gb|AC020912.6| Homo sapiens chromosome 19 clone CTD-2583G20, complete sequence
          Length = 163225

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 245    agtacttctccaccaccaaa 264
              ||||||||||||||||||||
Sbjct: 135966 agtacttctccaccaccaaa 135985
to top
>gb|U78045.1|HSU78045 Human collagenase and stromelysin genes, complete cds, and
             metalloelastase gene, partial cds
          Length = 81826

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 50    cgcacgcacgcacacccgcc 69
             ||||||||||||||||||||
Sbjct: 60689 cgcacgcacgcacacccgcc 60708
to top
>gb|DQ369960.1| Sugarcane mosaic virus isolate KhzL66 polyprotein gene, partial cds
          Length = 2002

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 agctcaaggaggagctcaac 300
           ||||||||||||||||||||
Sbjct: 903 agctcaaggaggagctcaac 922
to top
>gb|AY836523.1| Sugarcane mosaic virus strain E polyprotein gene, partial cds
          Length = 1795

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 agctcaaggaggagctcaac 300
           ||||||||||||||||||||
Sbjct: 697 agctcaaggaggagctcaac 716
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 17       ctccctcccgatctgtctga 36
                ||||||||||||||||||||
Sbjct: 26695691 ctccctcccgatctgtctga 26695672
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 17       ctccctcccgatctgtctga 36
                ||||||||||||||||||||
Sbjct: 16630140 ctccctcccgatctgtctga 16630121
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 17      ctccctcccgatctgtctga 36
               ||||||||||||||||||||
Sbjct: 1223988 ctccctcccgatctgtctga 1223969
to top
>gb|AY241923.1| Sugarcane mosaic virus nonfunctional polyprotein mRNA, partial
           sequence
          Length = 1330

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 agctcaaggaggagctcaac 300
           ||||||||||||||||||||
Sbjct: 231 agctcaaggaggagctcaac 250
to top
>gb|AF090447.2| Zea mays 22 kDa alpha zein gene cluster, complete sequence
          Length = 346296

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 256    accaccaaaaagggggagat 275
              ||||||||||||||||||||
Sbjct: 317303 accaccaaaaagggggagat 317322
to top
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 114     ggcaggccgcccgccaccgcgcgc 137
               ||||| ||||||||||||||||||
Sbjct: 2240950 ggcagcccgcccgccaccgcgcgc 2240973
to top
>gb|AY943294.1| Hordeum vulgare subsp. vulgare clone BAC 673I14, complete sequence
          Length = 108608

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 256   accaccaaaaagggggagat 275
             ||||||||||||||||||||
Sbjct: 35304 accaccaaaaagggggagat 35323
to top
>gb|DQ343236.1| Sugarcane mosaic virus nonfunctional coat protein gene, complete
           sequence
          Length = 899

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 agctcaaggaggagctcaac 300
           ||||||||||||||||||||
Sbjct: 85  agctcaaggaggagctcaac 104
to top
>dbj|AP003456.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0542E10
          Length = 146196

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 17    ctccctcccgatctgtctga 36
             ||||||||||||||||||||
Sbjct: 75941 ctccctcccgatctgtctga 75922
to top
>gb|AY953351.1| Sugarcane mosaic virus strain D polyprotein mRNA, partial cds
          Length = 1368

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 agctcaaggaggagctcaac 300
           ||||||||||||||||||||
Sbjct: 273 agctcaaggaggagctcaac 292
to top
>emb|AJ491974.1|SMO491974 Sugarcane mosaic virus partial cp gene for capsid protein, genomic
           RNA, isolate ZAF 54-1
          Length = 852

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 agctcaaggaggagctcaac 300
           ||||||||||||||||||||
Sbjct: 63  agctcaaggaggagctcaac 82
to top
>emb|AJ491973.1|SMO491973 Sugarcane mosaic virus partial cp gene for capsid protein, genomic
           RNA, isolate ZAF 53-1
          Length = 852

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 agctcaaggaggagctcaac 300
           ||||||||||||||||||||
Sbjct: 63  agctcaaggaggagctcaac 82
to top
>emb|AJ491972.1|SMO491972 Sugarcane mosaic virus partial cp gene for capsid protein, genomic
           RNA, isolate ZAF 52-1
          Length = 852

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 agctcaaggaggagctcaac 300
           ||||||||||||||||||||
Sbjct: 63  agctcaaggaggagctcaac 82
to top
>emb|AJ491970.1|SMO491970 Sugarcane mosaic virus partial cp gene for capsid protein, genomic
           RNA, isolate USA Lou 45-1
          Length = 840

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 agctcaaggaggagctcaac 300
           ||||||||||||||||||||
Sbjct: 63  agctcaaggaggagctcaac 82
to top
>emb|AJ491969.1|SMO491969 Sugarcane mosaic virus partial cp gene for capsid protein, genomic
           RNA, isolate USA Lou 44-1
          Length = 840

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 agctcaaggaggagctcaac 300
           ||||||||||||||||||||
Sbjct: 63  agctcaaggaggagctcaac 82
to top
>emb|AJ491968.1|SMO491968 Sugarcane mosaic virus partial cp gene for capsid protein, genomic
           RNA, isolate USA Lou 43-1
          Length = 840

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 agctcaaggaggagctcaac 300
           ||||||||||||||||||||
Sbjct: 63  agctcaaggaggagctcaac 82
to top
>emb|AJ491967.1|SMO491967 Sugarcane mosaic virus partial cp gene for capsid protein, genomic
           RNA, isolate USA Lou 42-1
          Length = 840

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 agctcaaggaggagctcaac 300
           ||||||||||||||||||||
Sbjct: 63  agctcaaggaggagctcaac 82
to top
>emb|AJ491966.1|SMO491966 Sugarcane mosaic virus partial cp gene for capsid protein, genomic
           RNA, isolate USA Lou 41-1
          Length = 828

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 agctcaaggaggagctcaac 300
           ||||||||||||||||||||
Sbjct: 63  agctcaaggaggagctcaac 82
to top
>emb|AJ491965.1|SMO491965 Sugarcane mosaic virus partial cp gene for capsid protein, genomic
           RNA, isolate USA Lou 40-1
          Length = 828

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 agctcaaggaggagctcaac 300
           ||||||||||||||||||||
Sbjct: 63  agctcaaggaggagctcaac 82
to top
>emb|AJ491964.1|SMO491964 Sugarcane mosaic virus partial cp gene for capsid protein, genomic
           RNA, isolate USA Flo 8-1
          Length = 840

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 agctcaaggaggagctcaac 300
           ||||||||||||||||||||
Sbjct: 63  agctcaaggaggagctcaac 82
to top
>emb|AJ491963.1|SMO491963 Sugarcane mosaic virus partial cp gene for capsid protein, genomic
           RNA, isolate EGY7-1
          Length = 852

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 agctcaaggaggagctcaac 300
           ||||||||||||||||||||
Sbjct: 63  agctcaaggaggagctcaac 82
to top
>emb|AJ491959.1|SMO491959 Sugarcane mosaic virus partial cp gene for capsid protein, genomic
           RNA, isolate CON12-1
          Length = 852

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 agctcaaggaggagctcaac 300
           ||||||||||||||||||||
Sbjct: 63  agctcaaggaggagctcaac 82
to top
>emb|AJ491956.1|SMO491956 Sugarcane mosaic virus partial cp gene for capsid protein, genomic
           RNA, isolate CON111-1
          Length = 852

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 agctcaaggaggagctcaac 300
           ||||||||||||||||||||
Sbjct: 63  agctcaaggaggagctcaac 82
to top
>emb|AJ491955.1|SMO491955 Sugarcane mosaic virus partial cp gene for capsid protein, genomic
           RNA, isolate CON110-1
          Length = 852

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 agctcaaggaggagctcaac 300
           ||||||||||||||||||||
Sbjct: 63  agctcaaggaggagctcaac 82
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>emb|AJ491954.1|SMO491954 Sugarcane mosaic virus partial cp gene for capsid protein, genomic
           RNA, isolate CON11-1
          Length = 852

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 agctcaaggaggagctcaac 300
           ||||||||||||||||||||
Sbjct: 63  agctcaaggaggagctcaac 82
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>emb|AJ491953.1|SMO491953 Sugarcane mosaic virus partial cp gene for capsid protein, genomic
           RNA, isolate CON109-1
          Length = 852

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 agctcaaggaggagctcaac 300
           ||||||||||||||||||||
Sbjct: 63  agctcaaggaggagctcaac 82
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>emb|AJ491952.1|SMO491952 Sugarcane mosaic virus partial cp gene for capsid protein, genomic
           RNA, isolate CON108-1
          Length = 852

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 agctcaaggaggagctcaac 300
           ||||||||||||||||||||
Sbjct: 63  agctcaaggaggagctcaac 82
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>emb|AJ491950.1|SMO491950 Sugarcane mosaic virus partial cp gene for capsid protein, genomic
           RNA, isolate CON106-1
          Length = 852

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 agctcaaggaggagctcaac 300
           ||||||||||||||||||||
Sbjct: 63  agctcaaggaggagctcaac 82
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>emb|AJ491949.1|SMO491949 Sugarcane mosaic virus partial cp gene for capsid protein, genomic
           RNA, isolate CON105-1
          Length = 852

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 agctcaaggaggagctcaac 300
           ||||||||||||||||||||
Sbjct: 63  agctcaaggaggagctcaac 82
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>emb|AJ491948.1|SMO491948 Sugarcane mosaic virus partial cp gene for capsid protein, genomic
           RNA, isolate CON104-1
          Length = 852

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 agctcaaggaggagctcaac 300
           ||||||||||||||||||||
Sbjct: 63  agctcaaggaggagctcaac 82
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>emb|AJ491943.1|SMO491943 Sugarcane mosaic virus partial cp gene for capsid protein, genomic
           RNA, isolate CON10-1
          Length = 852

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 agctcaaggaggagctcaac 300
           ||||||||||||||||||||
Sbjct: 63  agctcaaggaggagctcaac 82
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>dbj|AP005628.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1014_E02
          Length = 159669

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 17     ctccctcccgatctgtctga 36
              ||||||||||||||||||||
Sbjct: 101964 ctccctcccgatctgtctga 101945
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>dbj|AP005464.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
            clone:B1027A11
          Length = 169506

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 17   ctccctcccgatctgtctga 36
            ||||||||||||||||||||
Sbjct: 6050 ctccctcccgatctgtctga 6031
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>dbj|AK068250.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013139B12, full
            insert sequence
          Length = 4239

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 386  tccatctcgaggcatttcag 405
            ||||||||||||||||||||
Sbjct: 1907 tccatctcgaggcatttcag 1888
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>gb|AC154040.7| Mus musculus 10 BAC RP23-348E15 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 210862

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 50     cgcacgcacgcacacccgcc 69
              ||||||||||||||||||||
Sbjct: 148601 cgcacgcacgcacacccgcc 148620
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>gb|DQ316252.1| Sugarcane mosaic virus isolate wd-sg polyprotein gene, partial cds
          Length = 862

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 agctcaaggaggagctcaac 300
           ||||||||||||||||||||
Sbjct: 93  agctcaaggaggagctcaac 112
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>gb|DQ316251.1| Sugarcane mosaic virus isolate wd-dz polyprotein gene, partial cds
          Length = 866

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 agctcaaggaggagctcaac 300
           ||||||||||||||||||||
Sbjct: 94  agctcaaggaggagctcaac 113
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>gb|DQ316250.1| Sugarcane mosaic virus isolate so-bl6 polyprotein gene, partial cds
          Length = 859

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 agctcaaggaggagctcaac 300
           ||||||||||||||||||||
Sbjct: 86  agctcaaggaggagctcaac 105
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>gb|DQ316249.1| Sugarcane mosaic virus isolate so-bl5 polyprotein gene, partial cds
          Length = 860

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 agctcaaggaggagctcaac 300
           ||||||||||||||||||||
Sbjct: 93  agctcaaggaggagctcaac 112
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>gb|DQ316248.1| Sugarcane mosaic virus isolate so-bl4 polyprotein gene, partial cds
          Length = 892

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 agctcaaggaggagctcaac 300
           ||||||||||||||||||||
Sbjct: 87  agctcaaggaggagctcaac 106
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>gb|DQ316247.1| Sugarcane mosaic virus isolate so-bl2 polyprotein gene, partial cds
          Length = 851

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 agctcaaggaggagctcaac 300
           ||||||||||||||||||||
Sbjct: 53  agctcaaggaggagctcaac 72
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>gb|DQ316244.1| Sugarcane mosaic virus isolate sh-wy polyprotein gene, partial cds
          Length = 822

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 agctcaaggaggagctcaac 300
           ||||||||||||||||||||
Sbjct: 54  agctcaaggaggagctcaac 73
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>gb|DQ316243.1| Sugarcane mosaic virus isolate sh-sx polyprotein gene, partial cds
          Length = 842

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 agctcaaggaggagctcaac 300
           ||||||||||||||||||||
Sbjct: 71  agctcaaggaggagctcaac 90
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>gb|DQ316242.1| Sugarcane mosaic virus isolate sh-nn polyprotein gene, partial cds
          Length = 778

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 agctcaaggaggagctcaac 300
           ||||||||||||||||||||
Sbjct: 47  agctcaaggaggagctcaac 66
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>gb|DQ316240.1| Sugarcane mosaic virus isolate sh-hp2 polyprotein gene, partial cds
          Length = 859

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 agctcaaggaggagctcaac 300
           ||||||||||||||||||||
Sbjct: 93  agctcaaggaggagctcaac 112
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>gb|DQ316239.1| Sugarcane mosaic virus isolate sh-hp1 polyprotein gene, partial cds
          Length = 856

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 agctcaaggaggagctcaac 300
           ||||||||||||||||||||
Sbjct: 93  agctcaaggaggagctcaac 112
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>gb|DQ316238.1| Sugarcane mosaic virus isolate sh-gz4 polyprotein gene, partial cds
          Length = 843

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 agctcaaggaggagctcaac 300
           ||||||||||||||||||||
Sbjct: 86  agctcaaggaggagctcaac 105
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>gb|DQ316236.1| Sugarcane mosaic virus isolate sh-gz2 polyprotein gene, partial cds
          Length = 854

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 agctcaaggaggagctcaac 300
           ||||||||||||||||||||
Sbjct: 87  agctcaaggaggagctcaac 106
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>gb|DQ316235.1| Sugarcane mosaic virus isolate sh-gz1 polyprotein gene, partial cds
          Length = 860

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 agctcaaggaggagctcaac 300
           ||||||||||||||||||||
Sbjct: 87  agctcaaggaggagctcaac 106
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>gb|DQ316234.1| Sugarcane mosaic virus isolate sh-dz polyprotein gene, partial cds
          Length = 780

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 agctcaaggaggagctcaac 300
           ||||||||||||||||||||
Sbjct: 48  agctcaaggaggagctcaac 67
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>gb|DQ316232.1| Sugarcane mosaic virus isolate mz-gz2 polyprotein gene, partial cds
          Length = 828

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 agctcaaggaggagctcaac 300
           ||||||||||||||||||||
Sbjct: 78  agctcaaggaggagctcaac 97
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>gb|AF006738.1|AF006738 Sugarcane mosaic virus coat protein gene, partial cds
          Length = 942

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 agctcaaggaggagctcaac 300
           ||||||||||||||||||||
Sbjct: 75  agctcaaggaggagctcaac 94
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>gb|AF006737.1|AF006737 Sugarcane mosaic virus coat protein gene, partial cds
          Length = 942

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 agctcaaggaggagctcaac 300
           ||||||||||||||||||||
Sbjct: 75  agctcaaggaggagctcaac 94
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>gb|AF006736.1|AF006736 Sugarcane mosaic virus coat protein gene, partial cds
          Length = 918

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 agctcaaggaggagctcaac 300
           ||||||||||||||||||||
Sbjct: 75  agctcaaggaggagctcaac 94
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>gb|AF006735.1|AF006735 Sugarcane mosaic virus coat protein gene, partial cds
          Length = 942

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 agctcaaggaggagctcaac 300
           ||||||||||||||||||||
Sbjct: 75  agctcaaggaggagctcaac 94
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>gb|AF006733.1|AF006733 Sugarcane mosaic virus coat protein gene, partial cds
          Length = 921

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 agctcaaggaggagctcaac 300
           ||||||||||||||||||||
Sbjct: 75  agctcaaggaggagctcaac 94
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>gb|AF006732.1|AF006732 Sugarcane mosaic virus coat protein gene, partial cds
          Length = 921

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 agctcaaggaggagctcaac 300
           ||||||||||||||||||||
Sbjct: 75  agctcaaggaggagctcaac 94
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>gb|AF006731.1|AF006731 Sugarcane mosaic virus coat protein gene, partial cds
          Length = 942

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 agctcaaggaggagctcaac 300
           ||||||||||||||||||||
Sbjct: 75  agctcaaggaggagctcaac 94
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>gb|AF006730.1|AF006730 Sugarcane mosaic virus coat protein gene, partial cds
          Length = 921

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 agctcaaggaggagctcaac 300
           ||||||||||||||||||||
Sbjct: 75  agctcaaggaggagctcaac 94
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>gb|AF006729.1|AF006729 Sugarcane mosaic virus coat protein gene, partial cds
          Length = 903

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 agctcaaggaggagctcaac 300
           ||||||||||||||||||||
Sbjct: 75  agctcaaggaggagctcaac 94
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>gb|AF006728.1|AF006728 Sugarcane mosaic virus coat protein gene, partial cds
          Length = 942

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 agctcaaggaggagctcaac 300
           ||||||||||||||||||||
Sbjct: 75  agctcaaggaggagctcaac 94
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>gb|U57354.1|SMU57354 Sugarcane mosaic virus strain A polyprotein mRNA, partial cds
          Length = 1977

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 agctcaaggaggagctcaac 300
           ||||||||||||||||||||
Sbjct: 903 agctcaaggaggagctcaac 922
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>gb|U57357.1|SMU57357 Sugarcane mosaic virus strain E polyprotein mRNA, partial cds
          Length = 2001

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 agctcaaggaggagctcaac 300
           ||||||||||||||||||||
Sbjct: 903 agctcaaggaggagctcaac 922
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>gb|U57356.1|SMU57356 Sugarcane mosaic virus strain D polyprotein mRNA, partial cds
          Length = 1989

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 agctcaaggaggagctcaac 300
           ||||||||||||||||||||
Sbjct: 903 agctcaaggaggagctcaac 922
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>gb|M21778.1|PIJ101CG Plasmid pIJ101 (from S.lividans), complete genome
          Length = 8830

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 66   cgcctggctccccctcgccg 85
            ||||||||||||||||||||
Sbjct: 3305 cgcctggctccccctcgccg 3286
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>dbj|D00948.1|MSCCP Sugarcane mosaic virus mRNA for coat protein, partial cds
          Length = 1330

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 agctcaaggaggagctcaac 300
           ||||||||||||||||||||
Sbjct: 231 agctcaaggaggagctcaac 250


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,362,556
Number of Sequences: 3902068
Number of extensions: 3362556
Number of successful extensions: 120072
Number of sequences better than 10.0: 120
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 119643
Number of HSP's gapped (non-prelim): 427
length of query: 468
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 446
effective length of database: 17,147,199,772
effective search space: 7647651098312
effective search space used: 7647651098312
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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