ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl53c12 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK100311.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023078K23, full insert sequence Length = 3500 Score = 244 bits (123), Expect = 2e-61 Identities = 207/235 (88%) Strand = Plus / Plus Query: 168 gatcgtcgacaaggtcaaggagaaccgcgtcacgctgatcgtgggggacaccggatgcgg 227 |||||| || ||||| |||| |||||||||||| || ||||||||||||||||||||||| Sbjct: 171 gatcgtggagaaggtgaaggggaaccgcgtcactctcatcgtgggggacaccggatgcgg 230 Query: 228 aaagagctctatggttccccagttcctcctagaaggaaatttggaaccaattatgtgcac 287 |||||| ||||||||||| ||||||||||| |||| ||| ||||||| ||| | ||||| Sbjct: 231 aaagagttctatggttccacagttcctcctggaagaaaacatggaacccattctatgcac 290 Query: 288 acagccaaggaggtttgctgtagtagctattgctcaaatggtggccgaatctcgcaactg 347 ||||||||||||||||| |||||||| |||||||||||| | |||||||||||||| || Sbjct: 291 gcagccaaggaggtttgcagtagtagccattgctcaaatgattgccgaatctcgcaattg 350 Query: 348 tcaggttggagaagaggttggatatcatattggccactccaatgtgtcaaatctc 402 |||||| ||||||||||| |||||||| || || ||||| |||||||| |||||| Sbjct: 351 tcaggtaggagaagaggtcggatatcacataggacactcgaatgtgtccaatctc 405
>dbj|AP000570.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0711E10 Length = 157903 Score = 176 bits (89), Expect = 4e-41 Identities = 155/177 (87%) Strand = Plus / Minus Query: 226 ggaaagagctctatggttccccagttcctcctagaaggaaatttggaaccaattatgtgc 285 |||||||| ||||||||||| ||||||||||| |||| ||| ||||||| ||| | ||| Sbjct: 142725 ggaaagagttctatggttccacagttcctcctggaagaaaacatggaacccattctatgc 142666 Query: 286 acacagccaaggaggtttgctgtagtagctattgctcaaatggtggccgaatctcgcaac 345 || ||||||||||||||||| |||||||| |||||||||||| | |||||||||||||| Sbjct: 142665 acgcagccaaggaggtttgcagtagtagccattgctcaaatgattgccgaatctcgcaat 142606 Query: 346 tgtcaggttggagaagaggttggatatcatattggccactccaatgtgtcaaatctc 402 |||||||| ||||||||||| |||||||| || || ||||| |||||||| |||||| Sbjct: 142605 tgtcaggtaggagaagaggtcggatatcacataggacactcgaatgtgtccaatctc 142549 Score = 71.9 bits (36), Expect = 2e-09 Identities = 54/60 (90%) Strand = Plus / Minus Query: 168 gatcgtcgacaaggtcaaggagaaccgcgtcacgctgatcgtgggggacaccggatgcgg 227 |||||| || ||||| |||| |||||||||||| || ||||||||||||||||||||||| Sbjct: 143613 gatcgtggagaaggtgaaggggaaccgcgtcactctcatcgtgggggacaccggatgcgg 143554
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 176 bits (89), Expect = 4e-41 Identities = 155/177 (87%) Strand = Plus / Minus Query: 226 ggaaagagctctatggttccccagttcctcctagaaggaaatttggaaccaattatgtgc 285 |||||||| ||||||||||| ||||||||||| |||| ||| ||||||| ||| | ||| Sbjct: 8567572 ggaaagagttctatggttccacagttcctcctggaagaaaacatggaacccattctatgc 8567513 Query: 286 acacagccaaggaggtttgctgtagtagctattgctcaaatggtggccgaatctcgcaac 345 || ||||||||||||||||| |||||||| |||||||||||| | |||||||||||||| Sbjct: 8567512 acgcagccaaggaggtttgcagtagtagccattgctcaaatgattgccgaatctcgcaat 8567453 Query: 346 tgtcaggttggagaagaggttggatatcatattggccactccaatgtgtcaaatctc 402 |||||||| ||||||||||| |||||||| || || ||||| |||||||| |||||| Sbjct: 8567452 tgtcaggtaggagaagaggtcggatatcacataggacactcgaatgtgtccaatctc 8567396 Score = 71.9 bits (36), Expect = 2e-09 Identities = 54/60 (90%) Strand = Plus / Minus Query: 168 gatcgtcgacaaggtcaaggagaaccgcgtcacgctgatcgtgggggacaccggatgcgg 227 |||||| || ||||| |||| |||||||||||| || ||||||||||||||||||||||| Sbjct: 8568460 gatcgtggagaaggtgaaggggaaccgcgtcactctcatcgtgggggacaccggatgcgg 8568401 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Minus Query: 117 ggcgccgcggcggtggcggccgccgg 142 ||||||||||||| |||||||||||| Sbjct: 26385629 ggcgccgcggcggcggcggccgccgg 26385604 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 118 gcgccgcggcggtggcggccg 138 ||||||||||||||||||||| Sbjct: 10233639 gcgccgcggcggtggcggccg 10233619 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 ggcgccgcggcggtggcggc 136 |||||||||||||||||||| Sbjct: 5127634 ggcgccgcggcggtggcggc 5127615
>ref|NM_187916.1| Oryza sativa (japonica cultivar-group), Ozsa8358 predicted mRNA Length = 3594 Score = 133 bits (67), Expect = 5e-28 Identities = 112/127 (88%) Strand = Plus / Plus Query: 225 cggaaagagctctatggttccccagttcctcctagaaggaaatttggaaccaattatgtg 284 ||||||||| ||||||||||| ||||||||||| |||| ||| ||||||| ||| | || Sbjct: 1042 cggaaagagttctatggttccacagttcctcctggaagaaaacatggaacccattctatg 1101 Query: 285 cacacagccaaggaggtttgctgtagtagctattgctcaaatggtggccgaatctcgcaa 344 ||| ||||||||||||||||| |||||||| |||||||||||| | |||||||||||||| Sbjct: 1102 cacgcagccaaggaggtttgcagtagtagccattgctcaaatgattgccgaatctcgcaa 1161 Query: 345 ctgtcag 351 |||||| Sbjct: 1162 ttgtcag 1168 Score = 69.9 bits (35), Expect = 6e-09 Identities = 53/59 (89%) Strand = Plus / Plus Query: 168 gatcgtcgacaaggtcaaggagaaccgcgtcacgctgatcgtgggggacaccggatgcg 226 |||||| || ||||| |||| |||||||||||| || |||||||||||||||||||||| Sbjct: 936 gatcgtggagaaggtgaaggggaaccgcgtcactctcatcgtgggggacaccggatgcg 994
>dbj|AP002525.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0462H08 Length = 139152 Score = 71.9 bits (36), Expect = 2e-09 Identities = 54/60 (90%) Strand = Plus / Minus Query: 168 gatcgtcgacaaggtcaaggagaaccgcgtcacgctgatcgtgggggacaccggatgcgg 227 |||||| || ||||| |||| |||||||||||| || ||||||||||||||||||||||| Sbjct: 655 gatcgtggagaaggtgaaggggaaccgcgtcactctcatcgtgggggacaccggatgcgg 596
>gb|BC065817.1| Homo sapiens cDNA clone IMAGE:6186273, partial cds Length = 1900 Score = 48.1 bits (24), Expect = 0.022 Identities = 24/24 (100%) Strand = Plus / Minus Query: 114 ggaggcgccgcggcggtggcggcc 137 |||||||||||||||||||||||| Sbjct: 137 ggaggcgccgcggcggtggcggcc 114
>gb|AF193059.1|AF193059 Homo sapiens SP1224 mRNA, complete cds Length = 2492 Score = 48.1 bits (24), Expect = 0.022 Identities = 24/24 (100%) Strand = Plus / Minus Query: 114 ggaggcgccgcggcggtggcggcc 137 |||||||||||||||||||||||| Sbjct: 159 ggaggcgccgcggcggtggcggcc 136
>gb|AC074213.7| Homo sapiens BAC clone RP11-34K3 from 2, complete sequence Length = 176539 Score = 48.1 bits (24), Expect = 0.022 Identities = 24/24 (100%) Strand = Plus / Minus Query: 114 ggaggcgccgcggcggtggcggcc 137 |||||||||||||||||||||||| Sbjct: 171441 ggaggcgccgcggcggtggcggcc 171418
>ref|NM_130336.2| Arabidopsis thaliana ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding AT2G47680 mRNA, complete cds Length = 3082 Score = 44.1 bits (22), Expect = 0.34 Identities = 55/66 (83%) Strand = Plus / Plus Query: 281 tgtgcacacagccaaggaggtttgctgtagtagctattgctcaaatggtggccgaatctc 340 |||| |||||||| ||||| ||||| || |||||| ||||| | ||||| || |||||| Sbjct: 249 tgtgtacacagcctaggagatttgcggttgtagctgttgctaagatggttgctaaatctc 308 Query: 341 gcaact 346 |||||| Sbjct: 309 gcaact 314
>ref|XM_483497.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1719 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Minus Query: 118 gcgccgcggcggtggcggccgccggt 143 |||||||||||| ||||||||||||| Sbjct: 96 gcgccgcggcggcggcggccgccggt 71
>ref|XM_483496.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2194 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Minus Query: 118 gcgccgcggcggtggcggccgccggt 143 |||||||||||| ||||||||||||| Sbjct: 101 gcgccgcggcggcggcggccgccggt 76
>ref|XM_450281.1| Oryza sativa (japonica cultivar-group), mRNA Length = 813 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Plus Query: 111 ggcggaggcgccgcggcggtggcggc 136 ||||| |||||||||||||||||||| Sbjct: 390 ggcggcggcgccgcggcggtggcggc 415
>ref|NM_192395.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1746 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Minus Query: 117 ggcgccgcggcggtggcggccgccgg 142 ||||||||||||| |||||||||||| Sbjct: 159 ggcgccgcggcggcggcggccgccgg 134
>ref|XM_503942.1| Yarrowia lipolytica CLIB122, YALI0E14443g predicted mRNA Length = 1329 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Minus Query: 347 gtcaggttggagaagaggttgg 368 |||||||||||||||||||||| Sbjct: 884 gtcaggttggagaagaggttgg 863
>gb|AC005309.3| Arabidopsis thaliana chromosome 2 clone F17A22 map CIC06C03, complete sequence Length = 106355 Score = 44.1 bits (22), Expect = 0.34 Identities = 55/66 (83%) Strand = Plus / Minus Query: 281 tgtgcacacagccaaggaggtttgctgtagtagctattgctcaaatggtggccgaatctc 340 |||| |||||||| ||||| ||||| || |||||| ||||| | ||||| || |||||| Sbjct: 17728 tgtgtacacagcctaggagatttgcggttgtagctgttgctaagatggttgctaaatctc 17669 Query: 341 gcaact 346 |||||| Sbjct: 17668 gcaact 17663
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Plus Query: 111 ggcggaggcgccgcggcggtggcggc 136 ||||| |||||||||||||||||||| Sbjct: 3772675 ggcggcggcgccgcggcggtggcggc 3772700
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Minus Query: 118 gcgccgcggcggtggcggccgccggt 143 |||||||||||| ||||||||||||| Sbjct: 26536078 gcgccgcggcggcggcggccgccggt 26536053
>dbj|AP003710.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0032K15 Length = 126195 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Minus Query: 117 ggcgccgcggcggtggcggccgccgg 142 ||||||||||||| |||||||||||| Sbjct: 59494 ggcgccgcggcggcggcggccgccgg 59469
>dbj|AP005905.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1080A02 Length = 151360 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Plus Query: 111 ggcggaggcgccgcggcggtggcggc 136 ||||| |||||||||||||||||||| Sbjct: 12191 ggcggcggcgccgcggcggtggcggc 12216
>dbj|AP005553.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1116_H10 Length = 101054 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Plus Query: 111 ggcggaggcgccgcggcggtggcggc 136 ||||| |||||||||||||||||||| Sbjct: 79977 ggcggcggcgccgcggcggtggcggc 80002
>dbj|AP005529.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0702E04 Length = 190948 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Minus Query: 118 gcgccgcggcggtggcggccgccggt 143 |||||||||||| ||||||||||||| Sbjct: 84945 gcgccgcggcggcggcggccgccggt 84920
>dbj|AK105272.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-H01, full insert sequence Length = 1718 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Minus Query: 118 gcgccgcggcggtggcggccgccggt 143 |||||||||||| ||||||||||||| Sbjct: 96 gcgccgcggcggcggcggccgccggt 71
>dbj|AK071880.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013043I23, full insert sequence Length = 2193 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Minus Query: 118 gcgccgcggcggtggcggccgccggt 143 |||||||||||| ||||||||||||| Sbjct: 100 gcgccgcggcggcggcggccgccggt 75
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 347 gtcaggttggagaagaggttgg 368 |||||||||||||||||||||| Sbjct: 1729471 gtcaggttggagaagaggttgg 1729492
>ref|XM_470408.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1845 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 119 cgccgcggcggtggcggccgc 139 ||||||||||||||||||||| Sbjct: 33 cgccgcggcggtggcggccgc 53
>gb|AC111016.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1651_D06, complete sequence Length = 145323 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 119 cgccgcggcggtggcggccgc 139 ||||||||||||||||||||| Sbjct: 71257 cgccgcggcggtggcggccgc 71277
>gb|AC119292.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0088F07, complete sequence Length = 139180 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 118 gcgccgcggcggtggcggccg 138 ||||||||||||||||||||| Sbjct: 16086 gcgccgcggcggtggcggccg 16066
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 119 cgccgcggcggtggcggccgc 139 ||||||||||||||||||||| Sbjct: 35363063 cgccgcggcggtggcggccgc 35363043
>ref|XM_541741.2| PREDICTED: Canis familiaris similar to H1 histone family, member X (LOC484627), mRNA Length = 764 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 117 ggcgccgcggcggtggcggccgccg 141 ||||||| ||||||||||||||||| Sbjct: 538 ggcgccggggcggtggcggccgccg 514
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome Length = 2462499 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 122 cgcggcggtggcggccgccgg 142 ||||||||||||||||||||| Sbjct: 2005624 cgcggcggtggcggccgccgg 2005604
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 119 cgccgcggcggtggcggccgc 139 ||||||||||||||||||||| Sbjct: 22227992 cgccgcggcggtggcggccgc 22228012 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 118 gcgccgcggcggtggcggccg 138 ||||||||||||||||||||| Sbjct: 21135303 gcgccgcggcggtggcggccg 21135283
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 119 cgccgcggcggtggcggccgc 139 ||||||||||||||||||||| Sbjct: 35453135 cgccgcggcggtggcggccgc 35453115
>gb|AC099324.5| Oryza sativa chromosome 3 BAC OSJNBb0043P23 genomic sequence, complete sequence Length = 116443 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 119 cgccgcggcggtggcggccgc 139 ||||||||||||||||||||| Sbjct: 5391 cgccgcggcggtggcggccgc 5411
>gb|AC092559.4| Oryza sativa chromosome 3 BAC OSJNBb0096M04 genomic sequence, complete sequence Length = 133846 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 119 cgccgcggcggtggcggccgc 139 ||||||||||||||||||||| Sbjct: 124563 cgccgcggcggtggcggccgc 124583
>dbj|AP003020.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0498A12 Length = 159749 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 118 gcgccgcggcggtggcggccg 138 ||||||||||||||||||||| Sbjct: 98953 gcgccgcggcggtggcggccg 98933
>gb|AF500307.1| Guinea pig cytomegalovirus MIP-1-like protein gene, complete cds Length = 1803 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 121 ccgcggcggtggcggccgccg 141 ||||||||||||||||||||| Sbjct: 1400 ccgcggcggtggcggccgccg 1380
>dbj|AK063498.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-116-D07, full insert sequence Length = 903 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 119 cgccgcggcggtggcggccgc 139 ||||||||||||||||||||| Sbjct: 522 cgccgcggcggtggcggccgc 542
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 121 ccgcggcggtggcggccgccg 141 ||||||||||||||||||||| Sbjct: 4688859 ccgcggcggtggcggccgccg 4688839 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 118 gcgccgcggcggtggcggccg 138 ||||||||||||||||||||| Sbjct: 2818156 gcgccgcggcggtggcggccg 2818136
>ref|NM_188233.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 762 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 ggcgccgcggcggtggcggc 136 |||||||||||||||||||| Sbjct: 277 ggcgccgcggcggtggcggc 296
>ref|XM_468012.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1188 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 cgagaaggcggaggcgccgc 124 |||||||||||||||||||| Sbjct: 385 cgagaaggcggaggcgccgc 404
>gb|AC147812.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0073K23 map near R10571S, complete sequence Length = 161073 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 gcggcggtggcggccgccgg 142 |||||||||||||||||||| Sbjct: 9957 gcggcggtggcggccgccgg 9938
>gb|U51564.1|HCU51564 Human herpesvirus 5 UL105 (UL105) gene, complete cds Length = 3362 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 ggatcgtcgacaaggtcaag 186 |||||||||||||||||||| Sbjct: 398 ggatcgtcgacaaggtcaag 417
>gb|AY446894.1| Human herpesvirus 5 strain Merlin, complete genome Length = 235645 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 ggatcgtcgacaaggtcaag 186 |||||||||||||||||||| Sbjct: 153327 ggatcgtcgacaaggtcaag 153346
>gb|AY486477.1|AY486470S08 Human herpesvirus 5 strain Toledo genome, partial sequence Length = 24216 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 ggatcgtcgacaaggtcaag 186 |||||||||||||||||||| Sbjct: 21993 ggatcgtcgacaaggtcaag 22012
>ref|XM_983172.1| PREDICTED: Mus musculus hypothetical protein LOC670767 (LOC670767), mRNA Length = 732 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 gccgcggcggtggcggccgc 139 |||||||||||||||||||| Sbjct: 183 gccgcggcggtggcggccgc 164
>ref|XM_980705.1| PREDICTED: Mus musculus hypothetical protein LOC665982 (LOC665982), mRNA Length = 732 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 gccgcggcggtggcggccgc 139 |||||||||||||||||||| Sbjct: 183 gccgcggcggtggcggccgc 164
>gb|AC134837.3| Mus musculus BAC clone RP24-338L20 from chromosome 16, complete sequence Length = 175319 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 gccgcggcggtggcggccgc 139 |||||||||||||||||||| Sbjct: 137125 gccgcggcggtggcggccgc 137106
>ref|XM_541817.2| PREDICTED: Canis familiaris similar to ataxin 7, transcript variant 1 (LOC484701), mRNA Length = 2787 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 113 cggaggcgccgcggcggtggcggc 136 ||||||||||||||||| |||||| Sbjct: 179 cggaggcgccgcggcggcggcggc 156
>ref|XM_843193.1| PREDICTED: Canis familiaris similar to ataxin 7, transcript variant 2 (LOC484701), mRNA Length = 2999 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 113 cggaggcgccgcggcggtggcggc 136 ||||||||||||||||| |||||| Sbjct: 179 cggaggcgccgcggcggcggcggc 156
>gb|AC146999.1| Human Herpesvirus 5 AD169-BAC isolate, complete sequence Length = 233739 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 ggatcgtcgacaaggtcaag 186 |||||||||||||||||||| Sbjct: 68629 ggatcgtcgacaaggtcaag 68610
>gb|AC146907.1| Human Herpesvirus 5 FIX-BAC isolate, complete sequence Length = 229209 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 ggatcgtcgacaaggtcaag 186 |||||||||||||||||||| Sbjct: 74877 ggatcgtcgacaaggtcaag 74858
>gb|AC146906.1| Human Herpesvirus 5 TR-BAC isolate, complete sequence Length = 234881 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 ggatcgtcgacaaggtcaag 186 |||||||||||||||||||| Sbjct: 189021 ggatcgtcgacaaggtcaag 189040
>gb|AC146905.1| Human Herpesvirus 5 Toledo-BAC isolate, complete sequence Length = 226889 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 ggatcgtcgacaaggtcaag 186 |||||||||||||||||||| Sbjct: 70313 ggatcgtcgacaaggtcaag 70294
>gb|AC146904.1| Human Herpesvirus 5 PH-BAC isolate, complete sequence Length = 229700 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 ggatcgtcgacaaggtcaag 186 |||||||||||||||||||| Sbjct: 74982 ggatcgtcgacaaggtcaag 74963
>gb|AC146851.1| Human Herpesvirus 5 Towne-BAC isolate, complete sequence Length = 229483 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 ggatcgtcgacaaggtcaag 186 |||||||||||||||||||| Sbjct: 186479 ggatcgtcgacaaggtcaag 186498
>gb|AY315197.1| Human herpesvirus 5 strain Towne, complete genome Length = 231236 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 ggatcgtcgacaaggtcaag 186 |||||||||||||||||||| Sbjct: 151452 ggatcgtcgacaaggtcaag 151471
>ref|XM_862875.1| PREDICTED: Canis familiaris similar to Midasin (MIDAS-containing protein), transcript variant 2 (LOC474995), mRNA Length = 16583 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 283 tgcacacagccaaggaggtt 302 |||||||||||||||||||| Sbjct: 12548 tgcacacagccaaggaggtt 12529
>ref|XM_532232.2| PREDICTED: Canis familiaris similar to Midasin (MIDAS-containing protein), transcript variant 1 (LOC474995), mRNA Length = 16802 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 283 tgcacacagccaaggaggtt 302 |||||||||||||||||||| Sbjct: 12767 tgcacacagccaaggaggtt 12748
>gb|AC131691.4| Mus musculus BAC clone RP23-388P2 from chromosome 16, complete sequence Length = 202652 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 gccgcggcggtggcggccgc 139 |||||||||||||||||||| Sbjct: 172883 gccgcggcggtggcggccgc 172902
>gb|AF480884.1| Chimpanzee cytomegalovirus, complete genome Length = 241087 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 ggatcgtcgacaaggtcaag 186 |||||||||||||||||||| Sbjct: 154357 ggatcgtcgacaaggtcaag 154376
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 cgccgcggcggtggcggccg 138 |||||||||||||||||||| Sbjct: 3598505 cgccgcggcggtggcggccg 3598524
>emb|AL035469.7|HS46B1 Human DNA sequence from clone RP1-46B1 on chromosome 6q12, complete sequence Length = 158204 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 355 ggagaagaggttggatatca 374 |||||||||||||||||||| Sbjct: 156489 ggagaagaggttggatatca 156508
>gb|AY186194.1| Rhesus cytomegalovirus strain 68-1, complete genome Length = 221454 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 ggatcgtcgacaaggtcaag 186 |||||||||||||||||||| Sbjct: 140629 ggatcgtcgacaaggtcaag 140648
>emb|X17403.1|HEHCMVCG Human cytomegalovirus strain AD169 complete genome Length = 229354 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 ggatcgtcgacaaggtcaag 186 |||||||||||||||||||| Sbjct: 152020 ggatcgtcgacaaggtcaag 152039
>gb|DQ120516.1| Cercopithecine herpesvirus 8 isolate CMV 180.92, complete genome Length = 215678 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 ggatcgtcgacaaggtcaag 186 |||||||||||||||||||| Sbjct: 140637 ggatcgtcgacaaggtcaag 140656
>gb|AF281817.1|AF281817 Tupaia herpesvirus strain 2, complete genome Length = 195859 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 ggatcgtcgacaaggtcaag 186 |||||||||||||||||||| Sbjct: 162850 ggatcgtcgacaaggtcaag 162869
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 gcggcggtggcggccgccgg 142 |||||||||||||||||||| Sbjct: 3404337 gcggcggtggcggccgccgg 3404356
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 ggcgccgcggcggtggcggc 136 |||||||||||||||||||| Sbjct: 28999135 ggcgccgcggcggtggcggc 28999116
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 cgagaaggcggaggcgccgc 124 |||||||||||||||||||| Sbjct: 32555003 cgagaaggcggaggcgccgc 32554984
>gb|AC006464.3| Homo sapiens BAC clone RP11-436C12 from 2, complete sequence Length = 99908 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 260 aaggaaatttggaaccaattatgt 283 |||||||||||||| ||||||||| Sbjct: 39418 aaggaaatttggaagcaattatgt 39395
>dbj|AP002537.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0001B06 Length = 140304 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 ggcgccgcggcggtggcggc 136 |||||||||||||||||||| Sbjct: 121072 ggcgccgcggcggtggcggc 121053
>dbj|AP003417.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0498B01 Length = 146812 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 ggcgccgcggcggtggcggc 136 |||||||||||||||||||| Sbjct: 59665 ggcgccgcggcggtggcggc 59646
>dbj|AP003726.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0596H10 Length = 166570 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 ggcgccgcggcggtggcggc 136 |||||||||||||||||||| Sbjct: 14122 ggcgccgcggcggtggcggc 14103
>dbj|AP004058.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1353_F08 Length = 101988 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 cgagaaggcggaggcgccgc 124 |||||||||||||||||||| Sbjct: 51976 cgagaaggcggaggcgccgc 51957
>dbj|AK066823.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075K03, full insert sequence Length = 1188 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 cgagaaggcggaggcgccgc 124 |||||||||||||||||||| Sbjct: 385 cgagaaggcggaggcgccgc 404
>dbj|AK064009.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-G10, full insert sequence Length = 2271 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 ggcgccgcggcggtggcggc 136 |||||||||||||||||||| Sbjct: 130 ggcgccgcggcggtggcggc 149
>gb|AF047524.1|AF047524 Human cytomegalovirus UL104 gene, complete cds Length = 2094 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 ggatcgtcgacaaggtcaag 186 |||||||||||||||||||| Sbjct: 2016 ggatcgtcgacaaggtcaag 2035
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 gcggcggtggcggccgccgg 142 |||||||||||||||||||| Sbjct: 3413042 gcggcggtggcggccgccgg 3413061 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,546,511 Number of Sequences: 3902068 Number of extensions: 2546511 Number of successful extensions: 67993 Number of sequences better than 10.0: 78 Number of HSP's better than 10.0 without gapping: 80 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66878 Number of HSP's gapped (non-prelim): 1115 length of query: 402 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 380 effective length of database: 17,147,199,772 effective search space: 6515935913360 effective search space used: 6515935913360 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
