ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl53g12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PSD2_MOUSE (Q8VDM4) 26S proteasome non-ATPase regulatory subunit... 44 9e-05
2PSD2_HUMAN (Q13200) 26S proteasome non-ATPase regulatory subunit... 44 9e-05
3RPN1_SCHPO (P87048) 26S proteasome regulatory subunit rpn1 (Prot... 37 0.009
4RPN1_YEAST (P38764) 26S proteasome regulatory subunit RPN1 (Prot... 36 0.019
5RPN1_NEUCR (Q7S8R8) 26S proteasome regulatory subunit rpn-1 32 0.28
6BAT2_RAT (Q6MG48) Large proline-rich protein BAT2 (HLA-B-associa... 30 1.0
7PCY2_RAT (O88637) Ethanolamine-phosphate cytidylyltransferase (E... 30 1.8
8ELL2_HUMAN (O00472) RNA polymerase II elongation factor ELL2 30 1.8
9SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1... 29 2.3
10SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1 29 2.3
11SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1... 29 2.3
12SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1 29 2.3
13YKY4_CAEEL (Q17963) Hypothetical WD-repeat protein C14B1.4 29 3.0
14BORG5_HUMAN (Q00587) Cdc42 effector protein 1 (Binder of Rho GTP... 29 3.0
15BAT2_MOUSE (Q7TSC1) Large proline-rich protein BAT2 (HLA-B-assoc... 29 3.0
16BAT2_MACMU (Q5TM26) Large proline-rich protein BAT2 (HLA-B-assoc... 29 3.0
17DYNA_RAT (P28023) Dynactin-1 (150 kDa dynein-associated polypept... 28 4.0
18DYNA_MOUSE (O08788) Dynactin-1 (150 kDa dynein-associated polype... 28 4.0
19DYNA_HUMAN (Q14203) Dynactin-1 (150 kDa dynein-associated polype... 28 4.0
20RPN1_CANGA (Q6FPV6) 26S proteasome regulatory subunit RPN1 28 4.0
21PHF1_HUMAN (O43189) PHD finger protein 1 (PHF1 protein) 28 6.8
22CHS4_NEUCR (Q01285) Chitin synthase 4 (EC 2.4.1.16) (Chitin-UDP ... 28 6.8
23BORG5_MOUSE (Q91W92) Cdc42 effector protein 1 (Binder of Rho GTP... 28 6.8
24YACF_SALTY (P67693) UPF0289 protein yacF 27 8.9
25YACF_SALTI (P67694) UPF0289 protein yacF 27 8.9
26YACF_SALPA (Q5PDD7) UPF0289 protein yacF 27 8.9

>PSD2_MOUSE (Q8VDM4) 26S proteasome non-ATPase regulatory subunit 2 (26S|
           proteasome regulatory subunit RPN1) (26S proteasome
           regulatory subunit S2) (26S proteasome subunit p97)
          Length = 908

 Score = 43.9 bits (102), Expect = 9e-05
 Identities = 21/42 (50%), Positives = 32/42 (76%)
 Frame = +2

Query: 281 LREQLELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVP 406
           L+++LE+ V R  + D  + R ALE +R++IRS+T+SMTSVP
Sbjct: 52  LQDELEMLVERLGEKDTSLYRPALEELRRQIRSSTTSMTSVP 93



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>PSD2_HUMAN (Q13200) 26S proteasome non-ATPase regulatory subunit 2 (26S|
           proteasome regulatory subunit RPN1) (26S proteasome
           regulatory subunit S2) (26S proteasome subunit p97)
           (Tumor necrosis factor type 1 receptor-associated
           protein 2) (55.11 protein)
          Length = 908

 Score = 43.9 bits (102), Expect = 9e-05
 Identities = 21/42 (50%), Positives = 32/42 (76%)
 Frame = +2

Query: 281 LREQLELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVP 406
           L+++LE+ V R  + D  + R ALE +R++IRS+T+SMTSVP
Sbjct: 52  LQDELEMLVERLGEKDTSLYRPALEELRRQIRSSTTSMTSVP 93



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>RPN1_SCHPO (P87048) 26S proteasome regulatory subunit rpn1 (Proteasome|
           non-ATPase subunit mts4) (19S regulatory cap region of
           26S protease subunit 2)
          Length = 891

 Score = 37.4 bits (85), Expect = 0.009
 Identities = 19/44 (43%), Positives = 28/44 (63%)
 Frame = +2

Query: 275 LTLREQLELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVP 406
           L L+  LEL V   QD  P +   +L  +++ IR++TSSMT+VP
Sbjct: 51  LQLKNDLELLVQAVQDATPELVGSSLTQLKEIIRTSTSSMTAVP 94



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>RPN1_YEAST (P38764) 26S proteasome regulatory subunit RPN1 (Proteasome|
           non-ATPase subunit 1)
          Length = 992

 Score = 36.2 bits (82), Expect = 0.019
 Identities = 16/42 (38%), Positives = 29/42 (69%)
 Frame = +2

Query: 281 LREQLELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVP 406
           L+  LEL V R ++ D  +   +L ++++ I+++TSSMT+VP
Sbjct: 44  LKTDLELLVERLKEDDSSLYEASLNALKESIKNSTSSMTAVP 85



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>RPN1_NEUCR (Q7S8R8) 26S proteasome regulatory subunit rpn-1|
          Length = 883

 Score = 32.3 bits (72), Expect = 0.28
 Identities = 16/41 (39%), Positives = 28/41 (68%)
 Frame = +2

Query: 284 REQLELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVP 406
           +++ E  V   Q+ D  + + ALE+M+  I+++TSSMT+VP
Sbjct: 37  KKEEEQNVQCLQESDATLYKPALEAMKNSIKTSTSSMTAVP 77



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>BAT2_RAT (Q6MG48) Large proline-rich protein BAT2 (HLA-B-associated transcript|
            2)
          Length = 2161

 Score = 30.4 bits (67), Expect = 1.0
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +1

Query: 16   SSRK*TPTQQRRVASVPLAPRTLASPPAPSPNRIRPA 126
            S ++  P ++  +A VPLAP    +PP+P+P R   A
Sbjct: 1123 SDKEAPPPKEGVLAQVPLAPPQPGAPPSPAPARFSTA 1159



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>PCY2_RAT (O88637) Ethanolamine-phosphate cytidylyltransferase (EC 2.7.7.14)|
           (Phosphorylethanolamine transferase)
           (CTP:phosphoethanolamine cytidylyltransferase)
          Length = 404

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -2

Query: 116 IRFGDGAGGLARVRGASGTEATRRCCVGVY 27
           IR G GAGG A ++G  G    R  C G Y
Sbjct: 2   IRNGHGAGGAAGLKGPGGQRTVRVWCDGCY 31



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>ELL2_HUMAN (O00472) RNA polymerase II elongation factor ELL2|
          Length = 640

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +1

Query: 34  PTQQRRVASVPLAPRTLASP-PAPSPNRIRPASH 132
           PT ++  A +PL P   A P P P P+   P SH
Sbjct: 354 PTSEKSAAGLPLPPAAAAIPTPPPLPSTYLPISH 387



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>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1|
           (Plenty-of-prolines 101)
          Length = 946

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +1

Query: 16  SSRK*TPTQQRRVASVPLAPRTLASPPAPSPNRIRPA 126
           S R+ +P  QRR +  P   R  ASPP P   R  P+
Sbjct: 611 SPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPS 647



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>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1|
          Length = 917

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +1

Query: 16  SSRK*TPTQQRRVASVPLAPRTLASPPAPSPNRIRPA 126
           S R+ +P  QRR +  P   R  ASPP P   R  P+
Sbjct: 606 SPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPS 642



 Score = 28.1 bits (61), Expect = 5.2
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = +1

Query: 7   KRRSSRK*TPTQQRRVASVPLAPRTLASPP---APSPNRIRP 123
           +RRS     P ++RR  + P   RT + PP   +PSP R  P
Sbjct: 571 RRRSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSP 612



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>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1|
           (Ser/Arg-related nuclear matrix protein) (SR-related
           nuclear matrix protein of 160 kDa) (SRm160)
          Length = 904

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +1

Query: 16  SSRK*TPTQQRRVASVPLAPRTLASPPAPSPNRIRPA 126
           S R+ +P  QRR +  P   R  ASPP P   R  P+
Sbjct: 592 SPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPS 628



 Score = 28.1 bits (61), Expect = 5.2
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = +1

Query: 7   KRRSSRK*TPTQQRRVASVPLAPRTLASPP---APSPNRIRP 123
           +RRS     P ++RR  + P   RT + PP   +PSP R  P
Sbjct: 557 RRRSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSP 598



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>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1|
          Length = 888

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +1

Query: 16  SSRK*TPTQQRRVASVPLAPRTLASPPAPSPNRIRPA 126
           S R+ +P  QRR +  P   R  ASPP P   R  P+
Sbjct: 585 SPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPS 621



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>YKY4_CAEEL (Q17963) Hypothetical WD-repeat protein C14B1.4|
          Length = 376

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +1

Query: 34  PTQQRRVASVPLAPRTLASPPAP--SPNRIRPAS 129
           PTQQ    +VP AP   +S PAP  SPN I P++
Sbjct: 15  PTQQIDQLTVPNAPDGGSSAPAPSTSPNSISPSN 48



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>BORG5_HUMAN (Q00587) Cdc42 effector protein 1 (Binder of Rho GTPases 5) (Serum|
           protein MSE55)
          Length = 391

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +1

Query: 13  RSSRK*TPTQQRRVASVPLAPRTLASPPAPSP 108
           RS R     + + V  V   PR +ASPPAPSP
Sbjct: 76  RSPRSFLAKKLQLVRRVGAPPRRMASPPAPSP 107



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>BAT2_MOUSE (Q7TSC1) Large proline-rich protein BAT2 (HLA-B-associated transcript|
            2)
          Length = 2158

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 16   SSRK*TPTQQRRVASVPLAPRTLASPPAPSPNRIRPA 126
            S ++  P ++  +  VPLAP    +PP+P+P R   A
Sbjct: 1118 SDKEAPPPKEGVLGQVPLAPPQPGAPPSPAPARFSTA 1154



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>BAT2_MACMU (Q5TM26) Large proline-rich protein BAT2 (HLA-B-associated transcript|
            2)
          Length = 2160

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 16   SSRK*TPTQQRRVASVPLAPRTLASPPAPSPNR 114
            S ++  P ++  +  VPLAP    +PP+P+P R
Sbjct: 1123 SDKEAPPPKEGTLTQVPLAPPPPGAPPSPAPAR 1155



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>DYNA_RAT (P28023) Dynactin-1 (150 kDa dynein-associated polypeptide)|
           (DP-150) (DAP-150) (p150-glued)
          Length = 1280

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 3   SKAEILQKINPHAAAPSRLRTTRPPNPSQPAS 98
           +K   L+ + P  A  +R  TTR P P++PAS
Sbjct: 126 AKTSKLRGLKPKKAPTARKTTTRRPKPTRPAS 157



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>DYNA_MOUSE (O08788) Dynactin-1 (150 kDa dynein-associated polypeptide)|
           (DP-150) (DAP-150) (p150-glued)
          Length = 1281

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 3   SKAEILQKINPHAAAPSRLRTTRPPNPSQPAS 98
           +K   L+ + P  A  +R  TTR P P++PAS
Sbjct: 126 AKTSKLRGLKPKKAPTARKTTTRRPKPTRPAS 157



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>DYNA_HUMAN (Q14203) Dynactin-1 (150 kDa dynein-associated polypeptide)|
           (DP-150) (DAP-150) (p150-glued) (p135)
          Length = 1278

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 3   SKAEILQKINPHAAAPSRLRTTRPPNPSQPAS 98
           +K   L+ + P  A  +R  TTR P P++PAS
Sbjct: 126 AKTSKLRGLKPKKAPTARKTTTRRPKPTRPAS 157



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>RPN1_CANGA (Q6FPV6) 26S proteasome regulatory subunit RPN1|
          Length = 983

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +2

Query: 281 LREQLELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVP 406
           L+  LE+ V    + D  +    L  +++ I+++TSSMT+VP
Sbjct: 45  LKGDLEMLVQTLLEDDSKLYETTLTQLKEFIKNSTSSMTAVP 86



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>PHF1_HUMAN (O43189) PHD finger protein 1 (PHF1 protein)|
          Length = 567

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 34  PTQQRRVASVPLAPRTLASPPAPSPNR 114
           P +QR  A +  A +   SPP+PSPN+
Sbjct: 399 PQEQRERAHLQRALQASVSPPSPSPNQ 425



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>CHS4_NEUCR (Q01285) Chitin synthase 4 (EC 2.4.1.16) (Chitin-UDP|
           acetyl-glucosaminyl transferase 4) (Class-IV chitin
           synthase 4)
          Length = 1195

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +1

Query: 34  PTQQRRVASVPLAPRTLASPPAPSPN 111
           P+QQ+RV S+   P TL   P+P+PN
Sbjct: 6   PSQQQRVPSISSFPETL---PSPNPN 28



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>BORG5_MOUSE (Q91W92) Cdc42 effector protein 1 (Binder of Rho GTPases 5)|
          Length = 409

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +1

Query: 13  RSSRK*TPTQQRRVASVPLAPRTLASPPAPSP 108
           RS R     + ++V  V + PR +ASP APSP
Sbjct: 76  RSPRSFLARKLQQVRRVGVPPRRMASPAAPSP 107



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>YACF_SALTY (P67693) UPF0289 protein yacF|
          Length = 247

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +2

Query: 329 PGVQRLALESMRQEIRSATSSMTSVP 406
           PGV +  +E++RQ+++SA S + S P
Sbjct: 81  PGVDQDRIEALRQQLKSAGSVLISAP 106



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>YACF_SALTI (P67694) UPF0289 protein yacF|
          Length = 247

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +2

Query: 329 PGVQRLALESMRQEIRSATSSMTSVP 406
           PGV +  +E++RQ+++SA S + S P
Sbjct: 81  PGVDQDRIEALRQQLKSAGSVLISAP 106



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>YACF_SALPA (Q5PDD7) UPF0289 protein yacF|
          Length = 247

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +2

Query: 329 PGVQRLALESMRQEIRSATSSMTSVP 406
           PGV +  +E++RQ+++SA S + S P
Sbjct: 81  PGVDQDRIEALRQQLKSAGSVLISAP 106


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,407,984
Number of Sequences: 219361
Number of extensions: 358886
Number of successful extensions: 2116
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2101
length of database: 80,573,946
effective HSP length: 111
effective length of database: 56,224,875
effective search space used: 1349397000
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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