ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl53h04 |
|---|---|
| Clone Library Name | barley_pub |
>DNBI_HCMVA (P17147) Major DNA-binding protein (MDBP)| Length = 1235 Score = 32.0 bits (71), Expect = 0.79 Identities = 21/46 (45%), Positives = 23/46 (50%), Gaps = 1/46 (2%) Frame = -3 Query: 201 GNGHQVVA*PSDGVWIGRGGNEGGGL-VMRGHGQRNLRASNPKARR 67 G G V PSDG+ GRGG GG M G G R L AS + R Sbjct: 554 GGGRDVSGGPSDGLGGGRGGGGGGDSGGMMGRGGRMLGASVDRTYR 599
>CREM_HUMAN (Q03060) cAMP-responsive element modulator| Length = 332 Score = 31.6 bits (70), Expect = 1.0 Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 1/102 (0%) Frame = +1 Query: 139 IASPSYPDAI-TWSSDNLVAVASGHIVTILNPAALDGPRGLVVLRPRDPFPIGVVNREDL 315 IA+ + P +I S+ +A+A G + I NP + DG +GL L + Sbjct: 152 IATMAVPTSIYQTSTGQYIAIAQGGTIQISNPGS-DGVQGLQALTMTN------------ 198 Query: 316 FEPSLVPTSLARDTEPCARSVSWSQQGFAPNSGCLLAVCTGD 441 S P A + A+S +QQ F P S ++ TGD Sbjct: 199 ---SGAPPPGATIVQYAAQSADGTQQFFVPGSQVVVQAATGD 237
>TTC16_MOUSE (Q8C1F5) Tetratricopeptide repeat protein 16 (TPR repeat protein| 16) Length = 767 Score = 30.8 bits (68), Expect = 1.8 Identities = 31/98 (31%), Positives = 40/98 (40%), Gaps = 3/98 (3%) Frame = -1 Query: 443 PSPVQTANKQPEFGANPCWDHETDRAHGSVSRAKDV---GTKLGSKRSSLLTTPMGKGSL 273 PS + + PE G P T + RAK V G KL ++RSS T SL Sbjct: 640 PSQSTSTTEAPE-GPRPSKSRSTLSVKERIRRAKAVRAQGWKLKAQRSSQKVTKTP--SL 696 Query: 272 GRSTTSPRGPSSAAGFRIVTMWPEATATKLSLDQVMAS 159 STT SA T WP A LS ++ ++ Sbjct: 697 THSTTHSDIGESANDTPGQTPWPSKAADSLSFSEISST 734
>TF3C4_MOUSE (Q8BMQ2) General transcription factor 3C polypeptide 4 (EC| 2.3.1.48) (Transcription factor IIIC-delta subunit) (TF3C-delta) (TFIIIC 90 kDa subunit) (TFIIIC 90) Length = 817 Score = 30.0 bits (66), Expect = 3.0 Identities = 38/157 (24%), Positives = 63/157 (40%), Gaps = 27/157 (17%) Frame = +1 Query: 67 TASLRV*CSKVSLAMAPHYQAAALIASPSYPDAITWSSDNLVAVASGHIVTILNPAA-LD 243 +AS R+ ++ A+ Y + L + ++WS D+ V+V++ V +L + Sbjct: 40 SASFRLMVTRREPAVKLQYAVSGL-------EPLSWSEDHRVSVSTARSVAVLELICDVH 92 Query: 244 GP-RGLVVLRPRDPFPIG-----------VVNREDLFEPSLVPT-----SLARDTEPCAR 372 P + LV+ R P P+ V ++ F S PT L R P + Sbjct: 93 NPGQDLVIHRTSVPAPLNSCLLKVGSKTEVAECKEKFASSKDPTISQTFMLDRMFNPEGK 152 Query: 373 SV---------SWSQQGFAPNSGCLLAVCTGDGHVNL 456 ++ SWS G N CLLA T D + + Sbjct: 153 ALPPMRGFKYTSWSPMGCDANGRCLLAALTMDNRLTV 189
>DHE3_BACTN (P94598) Glutamate dehydrogenase (EC 1.4.1.3) (GDH)| (NAD(P)H-utilizing glutamate dehydrogenase) Length = 444 Score = 29.3 bits (64), Expect = 5.1 Identities = 17/33 (51%), Positives = 20/33 (60%) Frame = -1 Query: 314 RSSLLTTPMGKGSLGRSTTSPRGPSSAAGFRIV 216 ++SL T PMG G G S SPRG S+A R V Sbjct: 112 KNSLTTLPMGGGK-GGSDFSPRGKSNAEVMRFV 143
>TF3C4_HUMAN (Q9UKN8) General transcription factor 3C polypeptide 4 (EC| 2.3.1.48) (Transcription factor IIIC-delta subunit) (TF3C-delta) (TFIIIC 90 kDa subunit) (TFIIIC 90) Length = 822 Score = 29.3 bits (64), Expect = 5.1 Identities = 31/126 (24%), Positives = 50/126 (39%), Gaps = 27/126 (21%) Frame = +1 Query: 160 DAITWSSDNLVAVASGHIVTILNPAA-LDGP-RGLVVLRPRDPFPIG-----------VV 300 + + WS D+ V+V++ + +L + P + LV+ R P P+ V Sbjct: 68 EPLAWSEDHRVSVSTARSIAVLELICDVHNPGQDLVIHRTSVPAPLNSCLLKVGSKTEVA 127 Query: 301 NREDLFEPSLVPT-----SLARDTEPCARSV---------SWSQQGFAPNSGCLLAVCTG 438 ++ F S PT L R P +++ SWS G N CLLA T Sbjct: 128 ECKEKFAASKDPTVSQTFMLDRVFNPEGKALPPMRGFKYTSWSPMGCDANGRCLLAALTM 187 Query: 439 DGHVNL 456 D + + Sbjct: 188 DNRLTI 193
>ICAM3_BOVIN (Q28125) Intercellular adhesion molecule 3 precursor (ICAM-3) (CD50| antigen) Length = 544 Score = 28.9 bits (63), Expect = 6.7 Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 5/99 (5%) Frame = +1 Query: 157 PDAITWSSDNLVAVASGHIVTILNPAALDGPRGLVVLRPRDPF-PIG---VVNRE-DLFE 321 P + W+S + +A L P G V + P+DP P G VVN D Sbjct: 7 PPRVYWTSLIFLLLAC-----CLLPTGAQGQTYQVRVEPKDPVVPFGEPLVVNCTLDCPG 61 Query: 322 PSLVPTSLARDTEPCARSVSWSQQGFAPNSGCLLAVCTG 438 P L+ A EP +R + W+ +G + +C+G Sbjct: 62 PGLISLETALSKEPHSRGLGWAAFRLTNVTGDMEILCSG 100
>CSPG2_HUMAN (P13611) Versican core protein precursor (Large fibroblast| proteoglycan) (Chondroitin sulfate proteoglycan core protein 2) (PG-M) (Glial hyaluronate-binding protein) (GHAP) Length = 3396 Score = 28.9 bits (63), Expect = 6.7 Identities = 30/80 (37%), Positives = 38/80 (47%), Gaps = 8/80 (10%) Frame = +1 Query: 145 SPSYPDAITWSSDNLVAVASGHIVTILNPAALDG-PRGLVVLRPRDPFPIGVVNREDLFE 321 +PS P I S+ ASGH I P+AL G G V+ P+D F VN E F+ Sbjct: 2824 TPSSPLTIYSGSE-----ASGH-TEIPQPSALPGIDVGSSVMSPQDSFKEIHVNIEATFK 2877 Query: 322 PS-------LVPTSLARDTE 360 PS P SL+ DT+ Sbjct: 2878 PSSEEYLHITEPPSLSPDTK 2897
>PER1_MOUSE (O35973) Period circadian protein 1 (Circadian pacemaker protein| Rigui) (mPER) (M-Rigui) Length = 1291 Score = 28.9 bits (63), Expect = 6.7 Identities = 13/22 (59%), Positives = 13/22 (59%), Gaps = 1/22 (4%) Frame = +3 Query: 108 HGPALPGRRPHCLPVLSR-RHH 170 HGP PGRR HC R RHH Sbjct: 821 HGPIPPGRRHHCRSKAKRSRHH 842
>RTBDN_CANFA (Q4TUC0) Retbindin precursor| Length = 223 Score = 28.9 bits (63), Expect = 6.7 Identities = 21/53 (39%), Positives = 23/53 (43%), Gaps = 1/53 (1%) Frame = +3 Query: 117 ALPGRRPHCLPVLSRRHHLVKRQLG-GRCLWPHRHDPEPGGTRRASRTRCASP 272 A G RP LP LSRRHH + LG G+ PE G S C P Sbjct: 27 ACGGSRP--LPALSRRHHRLAADLGTGQLHLAEMDTPEASGPGMVSE-HCGKP 76
>GLYA_EHRRW (Q5HAJ7) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine| methylase) (SHMT) Length = 421 Score = 28.5 bits (62), Expect = 8.7 Identities = 20/73 (27%), Positives = 32/73 (43%) Frame = +1 Query: 103 LAMAPHYQAAALIASPSYPDAITWSSDNLVAVASGHIVTILNPAALDGPRGLVVLRPRDP 282 LA HY A L+A+ +P I ++ H++T L GPRG V++ Sbjct: 201 LADIAHY--AGLVAAGEFPSPIEYA----------HVITSTTHKTLRGPRGAVIM----- 243 Query: 283 FPIGVVNREDLFE 321 N ED+++ Sbjct: 244 -----TNHEDIYK 251
>GLYA_EHRRG (Q5FG30) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine| methylase) (SHMT) Length = 421 Score = 28.5 bits (62), Expect = 8.7 Identities = 20/73 (27%), Positives = 32/73 (43%) Frame = +1 Query: 103 LAMAPHYQAAALIASPSYPDAITWSSDNLVAVASGHIVTILNPAALDGPRGLVVLRPRDP 282 LA HY A L+A+ +P I ++ H++T L GPRG V++ Sbjct: 201 LADIAHY--AGLVAAGEFPSPIEYA----------HVITSTTHKTLRGPRGAVIM----- 243 Query: 283 FPIGVVNREDLFE 321 N ED+++ Sbjct: 244 -----TNHEDIYK 251
>DCD_COREF (Q8FM44) Deoxycytidine triphosphate deaminase (EC 3.5.4.13) (dCTP| deaminase) Length = 193 Score = 28.5 bits (62), Expect = 8.7 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = -1 Query: 311 SSLLTTPMGKGSLGRSTTSPRGPSSAAGF 225 SS TP G GSLG RGP+ + G+ Sbjct: 155 SSPAETPYGSGSLGSKYQGQRGPTPSKGY 183
>CSP_PLAKH (P02894) Circumsporozoite protein precursor (CS)| Length = 363 Score = 28.5 bits (62), Expect = 8.7 Identities = 16/46 (34%), Positives = 22/46 (47%) Frame = -3 Query: 207 ARGNGHQVVA*PSDGVWIGRGGNEGGGLVMRGHGQRNLRASNPKAR 70 A+G+G V +G GGNEG +G GQ N A+ P + Sbjct: 236 AQGDGANVPRQGRNGGGAPAGGNEGNKQAGKGQGQNNQGANAPNEK 281
>PER1_HUMAN (O15534) Period circadian protein 1 (Circadian pacemaker protein| Rigui) (hPER) Length = 1290 Score = 28.5 bits (62), Expect = 8.7 Identities = 13/22 (59%), Positives = 13/22 (59%), Gaps = 1/22 (4%) Frame = +3 Query: 108 HGPALPGRRPHCLPVLSR-RHH 170 HGPA P RR HC R RHH Sbjct: 824 HGPAPPSRRHHCRSKAKRSRHH 845 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 67,096,268 Number of Sequences: 219361 Number of extensions: 1472721 Number of successful extensions: 4512 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 4299 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4508 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2968155324 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
