ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl53h05 |
|---|---|
| Clone Library Name | barley_pub |
>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds Length = 2910 Score = 442 bits (223), Expect = e-121 Identities = 229/231 (99%) Strand = Plus / Plus Query: 219 ggcgaacctggagcagtggctcctgccgacgaacctgccgttcatcaccaccggcgagaa 278 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 291 ggcgaacctggagcagtggctcctgccgacgaacctgccgttcatcaccaccggcgagaa 350 Query: 279 caagttcgccgtcaccttcgactggtcggtggacaagctgggggtgccgggcgccatcat 338 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 351 caagttcgccgtcaccttcgactggtcggtggacaagctgggggtgccgggggccatcat 410 Query: 339 cgtcaagaacaaccacgcctccgagttcttcctcaagaccatcaccctcgacaacgtgcc 398 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 411 cgtcaagaacaaccacgcctccgagttcttcctcaagaccatcaccctcgacaacgtgcc 470 Query: 399 cggccgcggtaccatcgtcttcgtcgccaactcatgggtctacccgcaggc 449 ||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 471 cggccgcggcaccatcgtcttcgtcgccaactcatgggtctacccgcaggc 521 Score = 329 bits (166), Expect = 5e-87 Identities = 212/222 (95%), Gaps = 4/222 (1%) Strand = Plus / Plus Query: 1 cacacagcagcaccacagcgagctaacttagcaagcgtgccacactccccagagatcgag 60 ||||||||| |||| |||||||||||||||| ||||||||||||||||| |||||||||| Sbjct: 3 cacacagca-caccgcagcgagctaacttag-aagcgtgccacactccc-agagatcgag 59 Query: 61 cgaagatgtttggcgtcggcggcatcgtgagcgacctgacggggggcctccggggcgccc 120 | |||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct: 60 c-aagatgcttggcgtcggcggcatcgtgagcgacttgacggggggcatccggggcgccc 118 Query: 121 acctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 119 acctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcg 178 Query: 181 ccaccgtcatggacggcgtcaccgagctcctcggccgcggcg 222 || |||||||||||||||||||||||||||||||||||||| Sbjct: 179 cccacgtcatggacggcgtcaccgagctcctcggccgcggcg 220
>gb|AF271894.1|AF271894 Zea mays lipoxygenase (LOX) mRNA, complete cds Length = 2845 Score = 222 bits (112), Expect = 8e-55 Identities = 160/176 (90%) Strand = Plus / Plus Query: 272 gcgagaacaagttcgccgtcaccttcgactggtcggtggacaagctgggggtgccgggcg 331 |||||||| ||||| |||||||||||||||| |||||| |||| ||| | ||||||| Sbjct: 290 gcgagaaccagttccgcgtcaccttcgactgggaggtggagaagcagggcatcccgggcg 349 Query: 332 ccatcatcgtcaagaacaaccacgcctccgagttcttcctcaagaccatcaccctcgaca 391 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 350 ccatcatcgtcaagaacaaccacgcctccgagttcttcctcaagaccatcaccctcaacg 409 Query: 392 acgtgcccggccgcggtaccatcgtcttcgtcgccaactcatgggtctacccgcag 447 |||| ||||||| ||| ||||||||||||||||||||||||||| ||||||||||| Sbjct: 410 acgtccccggccacggcaccatcgtcttcgtcgccaactcatggatctacccgcag 465
>gb|AF465642.1| Zea mays Golden cross bantam-70 lipoxygenase gene, promoter region and partial cds Length = 3196 Score = 204 bits (103), Expect = 2e-49 Identities = 160/179 (89%) Strand = Plus / Plus Query: 269 ccggcgagaacaagttcgccgtcaccttcgactggtcggtggacaagctgggggtgccgg 328 |||||||| || ||||| |||||||||||||||| |||||| |||| || || |||| Sbjct: 2808 ccggcgaggaccagttccgcgtcaccttcgactgggaggtggagaagcacggcgtcccgg 2867 Query: 329 gcgccatcatcgtcaagaacaaccacgcctccgagttcttcctcaagaccatcaccctcg 388 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 2868 gcgccatcatcgtgaagaacaaccacgcctccgagttcttcctcaagaccatcaccatcg 2927 Query: 389 acaacgtgcccggccgcggtaccatcgtcttcgtcgccaactcatgggtctacccgcag 447 || |||| ||||||| ||| |||||||||||||||||||||||||||| ||||||||| Sbjct: 2928 acgacgtccccggccacggccccatcgtcttcgtcgccaactcatgggtgtacccgcag 2986 Score = 40.1 bits (20), Expect = 6.0 Identities = 32/36 (88%) Strand = Plus / Plus Query: 187 tcatggacggcgtcaccgagctcctcggccgcggcg 222 ||||||||||| || |||| ||||||||||||||| Sbjct: 2387 tcatggacggcctcggcgagttcctcggccgcggcg 2422
>gb|AF457968.1| Zea mays clone cho1c.pk002.j23, mRNA sequence Length = 515 Score = 198 bits (100), Expect = 1e-47 Identities = 195/227 (85%), Gaps = 6/227 (2%) Strand = Plus / Plus Query: 219 ggcgaacctggagcagtggctcctgccgacgaacctgccgttcatcaccaccggcgagaa 278 ||||||||||||||||||||| ||||| |||||||| | || ||||||||| Sbjct: 284 ggcgaacctggagcagtggct------gacgagcctgccgtcgctgacgaccggcgagtc 337 Query: 279 caagttcgccgtcaccttcgactggtcggtggacaagctgggggtgccgggcgccatcat 338 |||||||| |||||| ||||||||| |||||| |||||||| |||||||| ||| || | Sbjct: 338 caagttcggcgtcacgttcgactgggaggtggagaagctgggagtgccgggggccgtcgt 397 Query: 339 cgtcaagaacaaccacgcctccgagttcttcctcaagaccatcaccctcgacaacgtgcc 398 ||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||| Sbjct: 398 cgtcaagaacaaccacgccgccgagttcttcctcaagacaatcaccctcgacgacgtgcc 457 Query: 399 cggccgcggtaccatcgtcttcgtcgccaactcatgggtctacccgc 445 ||||||||| || || ||||||||||||||| ||||||||||||| Sbjct: 458 cggccgcggcgccgtcaacttcgtcgccaactcctgggtctacccgc 504 Score = 81.8 bits (41), Expect = 2e-12 Identities = 80/93 (86%) Strand = Plus / Plus Query: 123 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 182 ||||||||| | || || |||||||||||||||| ||| ||| ||||||||||||||||| Sbjct: 114 ctcaagggcacggtggtgctcatgcgcaagaacgtgctggacctcaacgacttcggcgcc 173 Query: 183 accgtcatggacggcgtcaccgagctcctcggc 215 |||||| | ||| || ||| |||| |||||||| Sbjct: 174 accgtcgttgacagcatcagcgagttcctcggc 206
>gb|AF465643.1| Zea mays B73 lipoxygenase gene, complete cds Length = 5013 Score = 194 bits (98), Expect = 2e-46 Identities = 193/225 (85%), Gaps = 6/225 (2%) Strand = Plus / Plus Query: 219 ggcgaacctggagcagtggctcctgccgacgaacctgccgttcatcaccaccggcgagaa 278 ||||||||||||||||||||| ||||| |||||||| | || ||||||||| Sbjct: 950 ggcgaacctggagcagtggct------gacgagcctgccgtcgctgacgaccggcgagtc 1003 Query: 279 caagttcgccgtcaccttcgactggtcggtggacaagctgggggtgccgggcgccatcat 338 |||||||| |||||| ||||||||| |||||| |||||||| |||||||| ||| || | Sbjct: 1004 caagttcggcgtcacgttcgactgggaggtggagaagctgggagtgccgggggccgtcgt 1063 Query: 339 cgtcaagaacaaccacgcctccgagttcttcctcaagaccatcaccctcgacaacgtgcc 398 ||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1064 cgtcaagaacaaccacgccgccgagttcttcctcaagacaatcaccctcgacgacgtgcc 1123 Query: 399 cggccgcggtaccatcgtcttcgtcgccaactcatgggtctaccc 443 ||||||||| || || ||||||||||||||| ||||||||||| Sbjct: 1124 cggccgcggcgccgtcaccttcgtcgccaactcctgggtctaccc 1168 Score = 81.8 bits (41), Expect = 2e-12 Identities = 80/93 (86%) Strand = Plus / Plus Query: 123 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 182 ||||||||| | || || |||||||||||||||| ||| ||| ||||||||||||||||| Sbjct: 200 ctcaagggcacggtggtgctcatgcgcaagaacgtgctggacctcaacgacttcggcgcc 259 Query: 183 accgtcatggacggcgtcaccgagctcctcggc 215 |||||| | ||| || ||| |||| |||||||| Sbjct: 260 accgtcgttgacagcatcagcgagttcctcggc 292
>gb|AF329371.1|AF329371 Zea mays lipoxygenase mRNA, complete cds Length = 2595 Score = 194 bits (98), Expect = 2e-46 Identities = 193/225 (85%), Gaps = 6/225 (2%) Strand = Plus / Plus Query: 219 ggcgaacctggagcagtggctcctgccgacgaacctgccgttcatcaccaccggcgagaa 278 ||||||||||||||||||||| ||||| |||||||| | || ||||||||| Sbjct: 222 ggcgaacctggagcagtggct------gacgagcctgccgtcgctgacgaccggcgagtc 275 Query: 279 caagttcgccgtcaccttcgactggtcggtggacaagctgggggtgccgggcgccatcat 338 |||||||| |||||| ||||||||| |||||| |||||||| |||||||| ||| || | Sbjct: 276 caagttcggcgtcacgttcgactgggaggtggagaagctgggagtgccgggggccgtcgt 335 Query: 339 cgtcaagaacaaccacgcctccgagttcttcctcaagaccatcaccctcgacaacgtgcc 398 ||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||| Sbjct: 336 cgtcaagaacaaccacgccgccgagttcttcctcaagacaatcaccctcgacgacgtgcc 395 Query: 399 cggccgcggtaccatcgtcttcgtcgccaactcatgggtctaccc 443 ||||||||| || || ||||||||||||||| ||||||||||| Sbjct: 396 cggccgcggcgccgtcaccttcgtcgccaactcctgggtctaccc 440 Score = 81.8 bits (41), Expect = 2e-12 Identities = 80/93 (86%) Strand = Plus / Plus Query: 123 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 182 ||||||||| | || || |||||||||||||||| ||| ||| ||||||||||||||||| Sbjct: 52 ctcaagggcacggtggtgctcatgcgcaagaacgtgctggacctcaacgacttcggcgcc 111 Query: 183 accgtcatggacggcgtcaccgagctcctcggc 215 |||||| | ||| || ||| |||| |||||||| Sbjct: 112 accgtcgttgacagcatcagcgagttcctcggc 144
>ref|XM_469655.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2613 Score = 167 bits (84), Expect = 4e-38 Identities = 108/116 (93%) Strand = Plus / Plus Query: 328 ggcgccatcatcgtcaagaacaaccacgcctccgagttcttcctcaagaccatcaccctc 387 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 322 ggcgccatcatcgtcaagaacaaccacgccgccgagttcttcctcaagaccatcaccctc 381 Query: 388 gacaacgtgcccggccgcggtaccatcgtcttcgtcgccaactcatgggtctaccc 443 |||||||| ||||||| ||| || ||||||||||||||||||| ||| ||||||| Sbjct: 382 gacaacgtccccggccacggcgccgtcgtcttcgtcgccaactcctggatctaccc 437 Score = 149 bits (75), Expect = 9e-33 Identities = 99/107 (92%) Strand = Plus / Plus Query: 116 cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgactt 175 ||||| ||||||||||||| |||||||||||||||||||||| |||||| |||||||||| Sbjct: 42 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgactt 101 Query: 176 cggcgccaccgtcatggacggcgtcaccgagctcctcggccgcggcg 222 ||||||||||||||| |||||| || ||||| ||||||||||||||| Sbjct: 102 cggcgccaccgtcatcgacggcatctccgagttcctcggccgcggcg 148
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 167 bits (84), Expect = 4e-38 Identities = 108/116 (93%) Strand = Plus / Plus Query: 328 ggcgccatcatcgtcaagaacaaccacgcctccgagttcttcctcaagaccatcaccctc 387 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 30023659 ggcgccatcatcgtcaagaacaaccacgccgccgagttcttcctcaagaccatcaccctc 30023718 Query: 388 gacaacgtgcccggccgcggtaccatcgtcttcgtcgccaactcatgggtctaccc 443 |||||||| ||||||| ||| || ||||||||||||||||||| ||| ||||||| Sbjct: 30023719 gacaacgtccccggccacggcgccgtcgtcttcgtcgccaactcctggatctaccc 30023774 Score = 149 bits (75), Expect = 9e-33 Identities = 99/107 (92%) Strand = Plus / Plus Query: 116 cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgactt 175 ||||| ||||||||||||| |||||||||||||||||||||| |||||| |||||||||| Sbjct: 30023301 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgactt 30023360 Query: 176 cggcgccaccgtcatggacggcgtcaccgagctcctcggccgcggcg 222 ||||||||||||||| |||||| || ||||| ||||||||||||||| Sbjct: 30023361 cggcgccaccgtcatcgacggcatctccgagttcctcggccgcggcg 30023407 Score = 125 bits (63), Expect = 1e-25 Identities = 119/137 (86%), Gaps = 3/137 (2%) Strand = Plus / Plus Query: 310 gacaagctgggggtgccgggcgccatcatcgtcaagaacaaccacgcctccgagttcttc 369 |||||||| || |||||||| |||||||||||||||||| ||||| | |||||||||| Sbjct: 27799413 gacaagctcggcgtgccgggggccatcatcgtcaagaaccaccacagcaacgagttcttc 27799472 Query: 370 ctcaagaccatcaccctcgacaacgtgcccggccgcg---gtaccatcgtcttcgtcgcc 426 ||||||||||||||||||||| |||| |||||||||| | || |||||||| ||||| Sbjct: 27799473 ctcaagaccatcaccctcgacgacgtccccggccgcgccggcgccgtcgtcttcctcgcc 27799532 Query: 427 aactcatgggtctaccc 443 ||||| ||||||||||| Sbjct: 27799533 aactcctgggtctaccc 27799549 Score = 89.7 bits (45), Expect = 7e-15 Identities = 81/93 (87%) Strand = Plus / Plus Query: 123 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 182 ||||||||| | || || |||||||||||||||| |||||| ||||||||||||||||| Sbjct: 27798757 ctcaagggcacggtggtgctcatgcgcaagaacgtcctcgacctcaacgacttcggcgcc 27798816 Query: 183 accgtcatggacggcgtcaccgagctcctcggc 215 |||||||| |||||| || |||| |||||||| Sbjct: 27798817 accgtcatcgacggcctcggcgagttcctcggc 27798849 Score = 75.8 bits (38), Expect = 1e-10 Identities = 74/86 (86%) Strand = Plus / Plus Query: 358 tccgagttcttcctcaagaccatcaccctcgacaacgtgcccggccgcggtaccatcgtc 417 |||||||||||||||||||| ||||||||||| ||| |||||| || ||| ||||| Sbjct: 27816818 tccgagttcttcctcaagacgctcaccctcgacggcgtccccggcaagggcaccgtcgtc 27816877 Query: 418 ttcgtcgccaactcatgggtctaccc 443 |||||||||||||| ||| ||||||| Sbjct: 27816878 ttcgtcgccaactcgtggatctaccc 27816903 Score = 63.9 bits (32), Expect = 4e-07 Identities = 68/80 (85%) Strand = Plus / Plus Query: 308 tggacaagctgggggtgccgggcgccatcatcgtcaagaacaaccacgcctccgagttct 367 ||||||||| || ||||| || ||||||||| |||||||| ||||| || |||||| Sbjct: 27758793 tggacaagcatggtgtgccaggggccatcatcatcaagaaccaccacagtaccaagttct 27758852 Query: 368 tcctcaagaccatcaccctc 387 |||||||||||||||||||| Sbjct: 27758853 tcctcaagaccatcaccctc 27758872 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 ggcgtcggcggcatcgtgag 91 |||||||||||||||||||| Sbjct: 24817033 ggcgtcggcggcatcgtgag 24817052
>emb|X64396.1|OSLRNA O.sativa mRNA for lipoxygenase L-2 Length = 2830 Score = 167 bits (84), Expect = 4e-38 Identities = 108/116 (93%) Strand = Plus / Plus Query: 328 ggcgccatcatcgtcaagaacaaccacgcctccgagttcttcctcaagaccatcaccctc 387 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 419 ggcgccatcatcgtcaagaacaaccacgccgccgagttcttcctcaagaccatcaccctc 478 Query: 388 gacaacgtgcccggccgcggtaccatcgtcttcgtcgccaactcatgggtctaccc 443 |||||||| ||||||| ||| || ||||||||||||||||||| ||| ||||||| Sbjct: 479 gacaacgtccccggccacggcgccgtcgtcttcgtcgccaactcctggatctaccc 534 Score = 133 bits (67), Expect = 5e-28 Identities = 97/107 (90%) Strand = Plus / Plus Query: 116 cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgactt 175 ||||| ||||||||||||| |||||||||||||||||||||| |||||| |||||||||| Sbjct: 139 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgactt 198 Query: 176 cggcgccaccgtcatggacggcgtcaccgagctcctcggccgcggcg 222 ||||||||||||||| || || || ||||| ||||||||||||||| Sbjct: 199 cggcgccaccgtcatcgagcgcatctccgagttcctcggccgcggcg 245
>gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genomic sequence, complete sequence Length = 155106 Score = 167 bits (84), Expect = 4e-38 Identities = 108/116 (93%) Strand = Plus / Minus Query: 328 ggcgccatcatcgtcaagaacaaccacgcctccgagttcttcctcaagaccatcaccctc 387 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 84092 ggcgccatcatcgtcaagaacaaccacgccgccgagttcttcctcaagaccatcaccctc 84033 Query: 388 gacaacgtgcccggccgcggtaccatcgtcttcgtcgccaactcatgggtctaccc 443 |||||||| ||||||| ||| || ||||||||||||||||||| ||| ||||||| Sbjct: 84032 gacaacgtccccggccacggcgccgtcgtcttcgtcgccaactcctggatctaccc 83977 Score = 149 bits (75), Expect = 9e-33 Identities = 99/107 (92%) Strand = Plus / Minus Query: 116 cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgactt 175 ||||| ||||||||||||| |||||||||||||||||||||| |||||| |||||||||| Sbjct: 84450 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgactt 84391 Query: 176 cggcgccaccgtcatggacggcgtcaccgagctcctcggccgcggcg 222 ||||||||||||||| |||||| || ||||| ||||||||||||||| Sbjct: 84390 cggcgccaccgtcatcgacggcatctccgagttcctcggccgcggcg 84344
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 167 bits (84), Expect = 4e-38 Identities = 108/116 (93%) Strand = Plus / Plus Query: 328 ggcgccatcatcgtcaagaacaaccacgcctccgagttcttcctcaagaccatcaccctc 387 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 30115081 ggcgccatcatcgtcaagaacaaccacgccgccgagttcttcctcaagaccatcaccctc 30115140 Query: 388 gacaacgtgcccggccgcggtaccatcgtcttcgtcgccaactcatgggtctaccc 443 |||||||| ||||||| ||| || ||||||||||||||||||| ||| ||||||| Sbjct: 30115141 gacaacgtccccggccacggcgccgtcgtcttcgtcgccaactcctggatctaccc 30115196 Score = 149 bits (75), Expect = 9e-33 Identities = 99/107 (92%) Strand = Plus / Plus Query: 116 cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgactt 175 ||||| ||||||||||||| |||||||||||||||||||||| |||||| |||||||||| Sbjct: 30114723 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgactt 30114782 Query: 176 cggcgccaccgtcatggacggcgtcaccgagctcctcggccgcggcg 222 ||||||||||||||| |||||| || ||||| ||||||||||||||| Sbjct: 30114783 cggcgccaccgtcatcgacggcatctccgagttcctcggccgcggcg 30114829 Score = 125 bits (63), Expect = 1e-25 Identities = 119/137 (86%), Gaps = 3/137 (2%) Strand = Plus / Plus Query: 310 gacaagctgggggtgccgggcgccatcatcgtcaagaacaaccacgcctccgagttcttc 369 |||||||| || |||||||| |||||||||||||||||| ||||| | |||||||||| Sbjct: 27890737 gacaagctcggcgtgccgggggccatcatcgtcaagaaccaccacagcaacgagttcttc 27890796 Query: 370 ctcaagaccatcaccctcgacaacgtgcccggccgcg---gtaccatcgtcttcgtcgcc 426 ||||||||||||||||||||| |||| |||||||||| | || |||||||| ||||| Sbjct: 27890797 ctcaagaccatcaccctcgacgacgtccccggccgcgccggcgccgtcgtcttcctcgcc 27890856 Query: 427 aactcatgggtctaccc 443 ||||| ||||||||||| Sbjct: 27890857 aactcctgggtctaccc 27890873 Score = 89.7 bits (45), Expect = 7e-15 Identities = 81/93 (87%) Strand = Plus / Plus Query: 123 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 182 ||||||||| | || || |||||||||||||||| |||||| ||||||||||||||||| Sbjct: 27890081 ctcaagggcacggtggtgctcatgcgcaagaacgtcctcgacctcaacgacttcggcgcc 27890140 Query: 183 accgtcatggacggcgtcaccgagctcctcggc 215 |||||||| |||||| || |||| |||||||| Sbjct: 27890141 accgtcatcgacggcctcggcgagttcctcggc 27890173 Score = 75.8 bits (38), Expect = 1e-10 Identities = 74/86 (86%) Strand = Plus / Plus Query: 358 tccgagttcttcctcaagaccatcaccctcgacaacgtgcccggccgcggtaccatcgtc 417 |||||||||||||||||||| ||||||||||| ||| |||||| || ||| ||||| Sbjct: 27908142 tccgagttcttcctcaagacgctcaccctcgacggcgtccccggcaagggcaccgtcgtc 27908201 Query: 418 ttcgtcgccaactcatgggtctaccc 443 |||||||||||||| ||| ||||||| Sbjct: 27908202 ttcgtcgccaactcgtggatctaccc 27908227 Score = 63.9 bits (32), Expect = 4e-07 Identities = 68/80 (85%) Strand = Plus / Plus Query: 308 tggacaagctgggggtgccgggcgccatcatcgtcaagaacaaccacgcctccgagttct 367 ||||||||| || ||||| || ||||||||| |||||||| ||||| || |||||| Sbjct: 27850116 tggacaagcatggtgtgccaggggccatcatcatcaagaaccaccacagtaccaagttct 27850175 Query: 368 tcctcaagaccatcaccctc 387 |||||||||||||||||||| Sbjct: 27850176 tcctcaagaccatcaccctc 27850195 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 ggcgtcggcggcatcgtgag 91 |||||||||||||||||||| Sbjct: 24908356 ggcgtcggcggcatcgtgag 24908375
>dbj|AK073529.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046E17, full insert sequence Length = 2928 Score = 167 bits (84), Expect = 4e-38 Identities = 108/116 (93%) Strand = Plus / Plus Query: 328 ggcgccatcatcgtcaagaacaaccacgcctccgagttcttcctcaagaccatcaccctc 387 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 437 ggcgccatcatcgtcaagaacaaccacgccgccgagttcttcctcaagaccatcaccctc 496 Query: 388 gacaacgtgcccggccgcggtaccatcgtcttcgtcgccaactcatgggtctaccc 443 |||||||| ||||||| ||| || ||||||||||||||||||| ||| ||||||| Sbjct: 497 gacaacgtccccggccacggcgccgtcgtcttcgtcgccaactcctggatctaccc 552 Score = 149 bits (75), Expect = 9e-33 Identities = 99/107 (92%) Strand = Plus / Plus Query: 116 cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgactt 175 ||||| ||||||||||||| |||||||||||||||||||||| |||||| |||||||||| Sbjct: 157 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgactt 216 Query: 176 cggcgccaccgtcatggacggcgtcaccgagctcctcggccgcggcg 222 ||||||||||||||| |||||| || ||||| ||||||||||||||| Sbjct: 217 cggcgccaccgtcatcgacggcatctccgagttcctcggccgcggcg 263
>ref|XM_469409.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2601 Score = 125 bits (63), Expect = 1e-25 Identities = 119/137 (86%), Gaps = 3/137 (2%) Strand = Plus / Plus Query: 310 gacaagctgggggtgccgggcgccatcatcgtcaagaacaaccacgcctccgagttcttc 369 |||||||| || |||||||| |||||||||||||||||| ||||| | |||||||||| Sbjct: 310 gacaagctcggcgtgccgggggccatcatcgtcaagaaccaccacagcaacgagttcttc 369 Query: 370 ctcaagaccatcaccctcgacaacgtgcccggccgcg---gtaccatcgtcttcgtcgcc 426 ||||||||||||||||||||| |||| |||||||||| | || |||||||| ||||| Sbjct: 370 ctcaagaccatcaccctcgacgacgtccccggccgcgccggcgccgtcgtcttcctcgcc 429 Query: 427 aactcatgggtctaccc 443 ||||| ||||||||||| Sbjct: 430 aactcctgggtctaccc 446 Score = 89.7 bits (45), Expect = 7e-15 Identities = 81/93 (87%) Strand = Plus / Plus Query: 123 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 182 ||||||||| | || || |||||||||||||||| |||||| ||||||||||||||||| Sbjct: 52 ctcaagggcacggtggtgctcatgcgcaagaacgtcctcgacctcaacgacttcggcgcc 111 Query: 183 accgtcatggacggcgtcaccgagctcctcggc 215 |||||||| |||||| || |||| |||||||| Sbjct: 112 accgtcatcgacggcctcggcgagttcctcggc 144
>gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0024B16 map S2606, complete sequence Length = 124140 Score = 125 bits (63), Expect = 1e-25 Identities = 119/137 (86%), Gaps = 3/137 (2%) Strand = Plus / Plus Query: 310 gacaagctgggggtgccgggcgccatcatcgtcaagaacaaccacgcctccgagttcttc 369 |||||||| || |||||||| |||||||||||||||||| ||||| | |||||||||| Sbjct: 43543 gacaagctcggcgtgccgggggccatcatcgtcaagaaccaccacagcaacgagttcttc 43602 Query: 370 ctcaagaccatcaccctcgacaacgtgcccggccgcg---gtaccatcgtcttcgtcgcc 426 ||||||||||||||||||||| |||| |||||||||| | || |||||||| ||||| Sbjct: 43603 ctcaagaccatcaccctcgacgacgtccccggccgcgccggcgccgtcgtcttcctcgcc 43662 Query: 427 aactcatgggtctaccc 443 ||||| ||||||||||| Sbjct: 43663 aactcctgggtctaccc 43679 Score = 89.7 bits (45), Expect = 7e-15 Identities = 81/93 (87%) Strand = Plus / Plus Query: 123 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 182 ||||||||| | || || |||||||||||||||| |||||| ||||||||||||||||| Sbjct: 42887 ctcaagggcacggtggtgctcatgcgcaagaacgtcctcgacctcaacgacttcggcgcc 42946 Query: 183 accgtcatggacggcgtcaccgagctcctcggc 215 |||||||| |||||| || |||| |||||||| Sbjct: 42947 accgtcatcgacggcctcggcgagttcctcggc 42979 Score = 75.8 bits (38), Expect = 1e-10 Identities = 74/86 (86%) Strand = Plus / Plus Query: 358 tccgagttcttcctcaagaccatcaccctcgacaacgtgcccggccgcggtaccatcgtc 417 |||||||||||||||||||| ||||||||||| ||| |||||| || ||| ||||| Sbjct: 60948 tccgagttcttcctcaagacgctcaccctcgacggcgtccccggcaagggcaccgtcgtc 61007 Query: 418 ttcgtcgccaactcatgggtctaccc 443 |||||||||||||| ||| ||||||| Sbjct: 61008 ttcgtcgccaactcgtggatctaccc 61033 Score = 63.9 bits (32), Expect = 4e-07 Identities = 68/80 (85%) Strand = Plus / Plus Query: 308 tggacaagctgggggtgccgggcgccatcatcgtcaagaacaaccacgcctccgagttct 367 ||||||||| || ||||| || ||||||||| |||||||| ||||| || |||||| Sbjct: 2922 tggacaagcatggtgtgccaggggccatcatcatcaagaaccaccacagtaccaagttct 2981 Query: 368 tcctcaagaccatcaccctc 387 |||||||||||||||||||| Sbjct: 2982 tcctcaagaccatcaccctc 3001
>gb|AC097368.3| Oryza sativa chromosome 3 BAC OSJNBb0017F17 genomic sequence, complete sequence Length = 119329 Score = 125 bits (63), Expect = 1e-25 Identities = 119/137 (86%), Gaps = 3/137 (2%) Strand = Plus / Minus Query: 310 gacaagctgggggtgccgggcgccatcatcgtcaagaacaaccacgcctccgagttcttc 369 |||||||| || |||||||| |||||||||||||||||| ||||| | |||||||||| Sbjct: 14480 gacaagctcggcgtgccgggggccatcatcgtcaagaaccaccacagcaacgagttcttc 14421 Query: 370 ctcaagaccatcaccctcgacaacgtgcccggccgcg---gtaccatcgtcttcgtcgcc 426 ||||||||||||||||||||| |||| |||||||||| | || |||||||| ||||| Sbjct: 14420 ctcaagaccatcaccctcgacgacgtccccggccgcgccggcgccgtcgtcttcctcgcc 14361 Query: 427 aactcatgggtctaccc 443 ||||| ||||||||||| Sbjct: 14360 aactcctgggtctaccc 14344 Score = 89.7 bits (45), Expect = 7e-15 Identities = 81/93 (87%) Strand = Plus / Minus Query: 123 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 182 ||||||||| | || || |||||||||||||||| |||||| ||||||||||||||||| Sbjct: 15136 ctcaagggcacggtggtgctcatgcgcaagaacgtcctcgacctcaacgacttcggcgcc 15077 Query: 183 accgtcatggacggcgtcaccgagctcctcggc 215 |||||||| |||||| || |||| |||||||| Sbjct: 15076 accgtcatcgacggcctcggcgagttcctcggc 15044 Score = 63.9 bits (32), Expect = 4e-07 Identities = 68/80 (85%) Strand = Plus / Minus Query: 308 tggacaagctgggggtgccgggcgccatcatcgtcaagaacaaccacgcctccgagttct 367 ||||||||| || ||||| || ||||||||| |||||||| ||||| || |||||| Sbjct: 55101 tggacaagcatggtgtgccaggggccatcatcatcaagaaccaccacagtaccaagttct 55042 Query: 368 tcctcaagaccatcaccctc 387 |||||||||||||||||||| Sbjct: 55041 tcctcaagaccatcaccctc 55022
>gb|U83904.1|HVU83904 Hordeum vulgare lipoxygenase isoenzyme 1 (Lox:Hv1) gene, promoter region and partial cds Length = 5236 Score = 115 bits (58), Expect = 1e-22 Identities = 141/168 (83%), Gaps = 3/168 (1%) Strand = Plus / Plus Query: 279 caagttcgccgtcaccttcgactggtcggtggacaagctgggggtgccgggcgccatcat 338 |||||||| | |||||||||||||| |||||| ||||| |||||||||||||||||| | Sbjct: 4340 caagttcggcctcaccttcgactgggaggtggagaagctcggggtgccgggcgccatcgt 4399 Query: 339 cgtcaagaacaaccacgcctccgagttcttcctcaagaccatcaccctcgacaacgtgcc 398 |||||| ||| ||||| |||||||||| | || || |||||||||||| || |||| || Sbjct: 4400 cgtcaacaactaccacagctccgagttcctgcttaaaaccatcaccctccacgacgtccc 4459 Query: 399 cggcc---gcggtaccatcgtcttcgtcgccaactcatgggtctaccc 443 ||||| |||| | | || ||||||||||||||||||| ||||||| Sbjct: 4460 cggccgcagcggcaacctcaccttcgtcgccaactcatggatctaccc 4507 Score = 81.8 bits (41), Expect = 2e-12 Identities = 80/93 (86%) Strand = Plus / Plus Query: 123 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 182 ||||||||| | || || |||||||||||||||| ||| ||| ||||||||||||||||| Sbjct: 3566 ctcaagggcacggtggtgctcatgcgcaagaacgtgctggacctcaacgacttcggcgcc 3625 Query: 183 accgtcatggacggcgtcaccgagctcctcggc 215 ||| |||| |||||| || |||| |||||||| Sbjct: 3626 accatcatcgacggcatcggcgagttcctcggc 3658
>gb|L35931.1|BLYLOXA Barley lipoxygenase 1 (LoxA) gene, complete cds Length = 2818 Score = 115 bits (58), Expect = 1e-22 Identities = 141/168 (83%), Gaps = 3/168 (1%) Strand = Plus / Plus Query: 279 caagttcgccgtcaccttcgactggtcggtggacaagctgggggtgccgggcgccatcat 338 |||||||| | |||||||||||||| |||||| ||||| |||||||||||||||||| | Sbjct: 347 caagttcggcctcaccttcgactgggaggtggagaagctcggggtgccgggcgccatcgt 406 Query: 339 cgtcaagaacaaccacgcctccgagttcttcctcaagaccatcaccctcgacaacgtgcc 398 |||||| ||| ||||| |||||||||| | || || |||||||||||| || |||| || Sbjct: 407 cgtcaacaactaccacagctccgagttcctgcttaaaaccatcaccctccacgacgtccc 466 Query: 399 cggcc---gcggtaccatcgtcttcgtcgccaactcatgggtctaccc 443 ||||| |||| | | || ||||||||||||||||||| ||||||| Sbjct: 467 cggccgcagcggcaacctcaccttcgtcgccaactcatggatctaccc 514 Score = 81.8 bits (41), Expect = 2e-12 Identities = 80/93 (86%) Strand = Plus / Plus Query: 123 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 182 ||||||||| | || || |||||||||||||||| ||| ||| ||||||||||||||||| Sbjct: 123 ctcaagggcacggtggtgctcatgcgcaagaacgtgctggacctcaacgacttcggcgcc 182 Query: 183 accgtcatggacggcgtcaccgagctcctcggc 215 ||| |||| |||||| || |||| |||||||| Sbjct: 183 accatcatcgacggcatcggcgagttcctcggc 215
>gb|AF464895.1| Oryza sativa basmati-370 lipoxygenase (Lox) gene, partial cds Length = 1160 Score = 111 bits (56), Expect = 2e-21 Identities = 101/116 (87%) Strand = Plus / Plus Query: 328 ggcgccatcatcgtcaagaacaaccacgcctccgagttcttcctcaagaccatcaccctc 387 ||||||| || || ||||||| |||||||| ||| | || |||||||||||||||||||| Sbjct: 250 ggcgccagcaccggcaagaaccaccacgccgccggggtcgtcctcaagaccatcaccctc 309 Query: 388 gacaacgtgcccggccgcggtaccatcgtcttcgtcgccaactcatgggtctaccc 443 | |||||| ||||||| ||| || ||||||||||||||||||| ||||||||||| Sbjct: 310 gccaacgtccccggccacggcgccgtcgtcttcgtcgccaactcctgggtctaccc 365 Score = 79.8 bits (40), Expect = 7e-12 Identities = 67/76 (88%) Strand = Plus / Plus Query: 147 cgcaagaacgcgctcgacttcaacgacttcggcgccaccgtcatggacggcgtcaccgag 206 ||||||||||| |||||| ||||||||||||||||||||||| | | ||||| ||||| Sbjct: 1 cgcaagaacgccctcgacatcaacgacttcggcgccaccgtcctcgggcgcgtctccgag 60 Query: 207 ctcctcggccgcggcg 222 ||||||||||||||| Sbjct: 61 ttcctcggccgcggcg 76
>ref|XM_469412.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2686 Score = 75.8 bits (38), Expect = 1e-10 Identities = 74/86 (86%) Strand = Plus / Plus Query: 358 tccgagttcttcctcaagaccatcaccctcgacaacgtgcccggccgcggtaccatcgtc 417 |||||||||||||||||||| ||||||||||| ||| |||||| || ||| ||||| Sbjct: 185 tccgagttcttcctcaagacgctcaccctcgacggcgtccccggcaagggcaccgtcgtc 244 Query: 418 ttcgtcgccaactcatgggtctaccc 443 |||||||||||||| ||| ||||||| Sbjct: 245 ttcgtcgccaactcgtggatctaccc 270
>ref|XM_469411.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3165 Score = 75.8 bits (38), Expect = 1e-10 Identities = 74/86 (86%) Strand = Plus / Plus Query: 358 tccgagttcttcctcaagaccatcaccctcgacaacgtgcccggccgcggtaccatcgtc 417 |||||||||||||||||||| ||||||||||| ||| |||||| || ||| ||||| Sbjct: 664 tccgagttcttcctcaagacgctcaccctcgacggcgtccccggcaagggcaccgtcgtc 723 Query: 418 ttcgtcgccaactcatgggtctaccc 443 |||||||||||||| ||| ||||||| Sbjct: 724 ttcgtcgccaactcgtggatctaccc 749
>gb|DQ389164.1| Oryza sativa (japonica cultivar-group) dual positional specificity lipoxygenase mRNA, complete cds Length = 3154 Score = 75.8 bits (38), Expect = 1e-10 Identities = 74/86 (86%) Strand = Plus / Plus Query: 358 tccgagttcttcctcaagaccatcaccctcgacaacgtgcccggccgcggtaccatcgtc 417 |||||||||||||||||||| ||||||||||| ||| |||||| || ||| ||||| Sbjct: 658 tccgagttcttcctcaagacgctcaccctcgacggcgtccccggcaagggcaccgtcgtc 717 Query: 418 ttcgtcgccaactcatgggtctaccc 443 |||||||||||||| ||| ||||||| Sbjct: 718 ttcgtcgccaactcgtggatctaccc 743
>dbj|AK072869.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143O17, full insert sequence Length = 2851 Score = 75.8 bits (38), Expect = 1e-10 Identities = 74/86 (86%) Strand = Plus / Plus Query: 358 tccgagttcttcctcaagaccatcaccctcgacaacgtgcccggccgcggtaccatcgtc 417 |||||||||||||||||||| ||||||||||| ||| |||||| || ||| ||||| Sbjct: 336 tccgagttcttcctcaagacgctcaccctcgacggcgtccccggcaagggcaccgtcgtc 395 Query: 418 ttcgtcgccaactcatgggtctaccc 443 |||||||||||||| ||| ||||||| Sbjct: 396 ttcgtcgccaactcgtggatctaccc 421
>dbj|AK072689.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143H13, full insert sequence Length = 3167 Score = 75.8 bits (38), Expect = 1e-10 Identities = 74/86 (86%) Strand = Plus / Plus Query: 358 tccgagttcttcctcaagaccatcaccctcgacaacgtgcccggccgcggtaccatcgtc 417 |||||||||||||||||||| ||||||||||| ||| |||||| || ||| ||||| Sbjct: 665 tccgagttcttcctcaagacgctcaccctcgacggcgtccccggcaagggcaccgtcgtc 724 Query: 418 ttcgtcgccaactcatgggtctaccc 443 |||||||||||||| ||| ||||||| Sbjct: 725 ttcgtcgccaactcgtggatctaccc 750
>gb|AY103567.1| Zea mays PCO116252 mRNA sequence Length = 3135 Score = 71.9 bits (36), Expect = 2e-09 Identities = 75/88 (85%) Strand = Plus / Plus Query: 359 ccgagttcttcctcaagaccatcaccctcgacaacgtgcccggccgcggtaccatcgtct 418 ||||||||||||||||||| |||||||||| ||| || ||| || ||| |||||| Sbjct: 608 ccgagttcttcctcaagacgctcaccctcgagggcgtcccaggcaagggcaccgtcgtct 667 Query: 419 tcgtcgccaactcatgggtctacccgca 446 ||||||||||||| |||||||||||||| Sbjct: 668 tcgtcgccaactcgtgggtctacccgca 695
>ref|XM_469401.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2726 Score = 63.9 bits (32), Expect = 4e-07 Identities = 68/80 (85%) Strand = Plus / Plus Query: 308 tggacaagctgggggtgccgggcgccatcatcgtcaagaacaaccacgcctccgagttct 367 ||||||||| || ||||| || ||||||||| |||||||| ||||| || |||||| Sbjct: 302 tggacaagcatggtgtgccaggggccatcatcatcaagaaccaccacagtaccaagttct 361 Query: 368 tcctcaagaccatcaccctc 387 |||||||||||||||||||| Sbjct: 362 tcctcaagaccatcaccctc 381
>dbj|AB099850.1| Oryza sativa (japonica cultivar-group) r9-LOX1 mRNA for 9-lipoxigenase, complete cds Length = 2988 Score = 63.9 bits (32), Expect = 4e-07 Identities = 68/80 (85%) Strand = Plus / Plus Query: 308 tggacaagctgggggtgccgggcgccatcatcgtcaagaacaaccacgcctccgagttct 367 ||||||||| || ||||| || ||||||||| |||||||| ||||| || |||||| Sbjct: 368 tggacaagcatggtgtgccaggggccatcatcatcaagaaccaccacagtaccaagttct 427 Query: 368 tcctcaagaccatcaccctc 387 |||||||||||||||||||| Sbjct: 428 tcctcaagaccatcaccctc 447
>dbj|AK103565.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033132L12, full insert sequence Length = 2830 Score = 63.9 bits (32), Expect = 4e-07 Identities = 68/80 (85%) Strand = Plus / Plus Query: 308 tggacaagctgggggtgccgggcgccatcatcgtcaagaacaaccacgcctccgagttct 367 ||||||||| || ||||| || ||||||||| |||||||| ||||| || |||||| Sbjct: 376 tggacaagcatggtgtgccaggggccatcatcatcaagaaccaccacagtaccaagttct 435 Query: 368 tcctcaagaccatcaccctc 387 |||||||||||||||||||| Sbjct: 436 tcctcaagaccatcaccctc 455
>gb|AC109929.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0093J03, complete sequence Length = 200626 Score = 46.1 bits (23), Expect = 0.098 Identities = 29/31 (93%) Strand = Plus / Plus Query: 361 gagttcttcctcaagaccatcaccctcgaca 391 ||||||||| |||| |||||||||||||||| Sbjct: 134348 gagttcttcgtcaacaccatcaccctcgaca 134378
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 46.1 bits (23), Expect = 0.098 Identities = 29/31 (93%) Strand = Plus / Plus Query: 361 gagttcttcctcaagaccatcaccctcgaca 391 ||||||||| |||| |||||||||||||||| Sbjct: 20827287 gagttcttcgtcaacaccatcaccctcgaca 20827317
>dbj|AK102084.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033082M03, full insert sequence Length = 2930 Score = 46.1 bits (23), Expect = 0.098 Identities = 29/31 (93%) Strand = Plus / Plus Query: 361 gagttcttcctcaagaccatcaccctcgaca 391 ||||||||| |||| |||||||||||||||| Sbjct: 417 gagttcttcgtcaacaccatcaccctcgaca 447
>dbj|AK073570.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046P13, full insert sequence Length = 3010 Score = 46.1 bits (23), Expect = 0.098 Identities = 29/31 (93%) Strand = Plus / Plus Query: 361 gagttcttcctcaagaccatcaccctcgaca 391 ||||||||| |||| |||||||||||||||| Sbjct: 417 gagttcttcgtcaacaccatcaccctcgaca 447
>gb|L37359.1|BLYLOXB Hordeum vulgare lipoxygenase (LoxB) mRNA, complete cds Length = 3003 Score = 46.1 bits (23), Expect = 0.098 Identities = 29/31 (93%) Strand = Plus / Plus Query: 413 tcgtcttcgtcgccaactcatgggtctaccc 443 ||||||||||||||||||| ||| ||||||| Sbjct: 561 tcgtcttcgtcgccaactcctggatctaccc 591
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 46.1 bits (23), Expect = 0.098 Identities = 29/31 (93%) Strand = Plus / Plus Query: 361 gagttcttcctcaagaccatcaccctcgaca 391 ||||||||| |||| |||||||||||||||| Sbjct: 21137522 gagttcttcgtcaacaccatcaccctcgaca 21137552
>gb|AE005807.1| Caulobacter crescentus CB15 section 133 of 359 of the complete genome Length = 8803 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Plus Query: 155 cgcgctcgacttcaacgacttcggcg 180 ||||| |||||||||||||||||||| Sbjct: 4469 cgcgcacgacttcaacgacttcggcg 4494
>ref|NM_003028.1| Homo sapiens Src homology 2 domain containing adaptor protein B (SHB), mRNA Length = 2306 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 100 cggggggcctccggggcgccc 120 ||||||||||||||||||||| Sbjct: 469 cggggggcctccggggcgccc 449
>gb|AY596511.1| Helicosporidium sp. ex Simulium jonesii gamma-carbonic anhydrase mRNA, partial cds Length = 775 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 176 cggcgccaccgtcatggacggcgtcaccg 204 ||||||||| ||||||||||||| ||||| Sbjct: 400 cggcgccacggtcatggacggcgccaccg 428
>emb|X75342.1|HSSHB H.sapiens SHB mRNA Length = 2306 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 100 cggggggcctccggggcgccc 120 ||||||||||||||||||||| Sbjct: 469 cggggggcctccggggcgccc 449
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Minus Query: 191 ggacggcgtcaccgagctcctcggccgcggcga 223 ||||||||| | |||| |||||||||||||||| Sbjct: 1448865 ggacggcgtgatcgagttcctcggccgcggcga 1448833
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 379 atcaccctcgacaacgtgcc 398 |||||||||||||||||||| Sbjct: 301337 atcaccctcgacaacgtgcc 301318
>gb|AC145811.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0088L13 map near C50029S, complete sequence Length = 129900 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 ggcgtcggcggcatcgtgag 91 |||||||||||||||||||| Sbjct: 52268 ggcgtcggcggcatcgtgag 52287
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 285 cgccgtcaccttcgactggtcggtggac 312 ||||| ||||||||| |||||||||||| Sbjct: 3465594 cgccggcaccttcgaatggtcggtggac 3465621
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 gctcctgccgacgaacctgc 256 |||||||||||||||||||| Sbjct: 137505 gctcctgccgacgaacctgc 137486
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 251 acctgccgttcatcaccaccggcg 274 ||||||||||||||| |||||||| Sbjct: 288875 acctgccgttcatcatcaccggcg 288852
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 251 acctgccgttcatcaccaccggcg 274 ||||||||||||||| |||||||| Sbjct: 153202 acctgccgttcatcatcaccggcg 153225
>gb|AY316746.1| Rhizobium sp. NGR234 megaplasmid 2 contig 2, complete sequence Length = 236455 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 77 cggcggcatcgtgagcgacctgac 100 ||||||||||| |||||||||||| Sbjct: 205636 cggcggcatcgagagcgacctgac 205659
>emb|AL591790.1|SME591790 Sinorhizobium meliloti 1021 complete chromosome; segment 9/12 Length = 323450 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 77 cggcggcatcgtgagcgacctgac 100 ||||||||||| |||||||||||| Sbjct: 80122 cggcggcatcgagagcgacctgac 80099
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 321 ggtgccgggcgccatcatcg 340 |||||||||||||||||||| Sbjct: 608859 ggtgccgggcgccatcatcg 608840
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 255 gccgttcatcaccaccggcg 274 |||||||||||||||||||| Sbjct: 1867059 gccgttcatcaccaccggcg 1867040
>emb|AL731878.4|CNS08C8I Oryza sativa chromosome 3, . BAC OSJNBb0116P11 of library OSJNBb from chromosome 3 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 128559 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 ggcgtcggcggcatcgtgag 91 |||||||||||||||||||| Sbjct: 103984 ggcgtcggcggcatcgtgag 104003
>gb|AC079160.5| Homo sapiens BAC clone RP11-176K15 from 4, complete sequence Length = 147727 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 acctggagcagtggctcctg 243 |||||||||||||||||||| Sbjct: 78731 acctggagcagtggctcctg 78750
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 175 tcggcgccaccgtcatggacggcg 198 ||||||||| |||||||||||||| Sbjct: 2990742 tcggcgccatcgtcatggacggcg 2990719
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 ggcgtcggcggcatcgtgagcgac 95 |||||||||||||||||| ||||| Sbjct: 5079435 ggcgtcggcggcatcgtgcgcgac 5079412
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 72 ggcgtcggcggcatcgtgagcgac 95 |||||||||||||||||| ||||| Sbjct: 590306 ggcgtcggcggcatcgtgcgcgac 590329 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 145 tgcgcaagaacgcgctcgacttca 168 ||||||||||| |||||||||||| Sbjct: 206796 tgcgcaagaacccgctcgacttca 206773
>dbj|AK109329.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-B01, full insert sequence Length = 1556 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 ggcgtcggcggcatcgtgag 91 |||||||||||||||||||| Sbjct: 613 ggcgtcggcggcatcgtgag 594
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 72 ggcgtcggcggcatcgtgagcgac 95 |||||||||||||||||| ||||| Sbjct: 657733 ggcgtcggcggcatcgtgcgcgac 657756 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,563,471 Number of Sequences: 3902068 Number of extensions: 2563471 Number of successful extensions: 56192 Number of sequences better than 10.0: 55 Number of HSP's better than 10.0 without gapping: 59 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54664 Number of HSP's gapped (non-prelim): 1522 length of query: 449 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 427 effective length of database: 17,147,199,772 effective search space: 7321854302644 effective search space used: 7321854302644 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
