ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl54c10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1BGAL_MALDO (P48981) Beta-galactosidase precursor (EC 3.2.1.23) (... 63 3e-10
2BGAL_ASPOF (P45582) Beta-galactosidase precursor (EC 3.2.1.23) (... 62 7e-10
3BGAL_LYCES (P48980) Beta-galactosidase precursor (EC 3.2.1.23) (... 60 3e-09
4BGAL_BRAOL (P49676) Beta-galactosidase precursor (EC 3.2.1.23) (... 59 5e-09
5BGAL_DIACA (Q00662) Putative beta-galactosidase precursor (EC 3.... 55 5e-08
6TTGH_PSEPU (Q93PU4) Toluene efflux pump membrane transporter ttgH 28 8.8
7SRPB_PSEPU (O31100) Solvent resistant pump membrane transporter ... 28 8.8

>BGAL_MALDO (P48981) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase) (Acid|
           beta-galactosidase) (Exo-(1-->4)-beta-D-galactanase)
          Length = 731

 Score = 62.8 bits (151), Expect = 3e-10
 Identities = 23/39 (58%), Positives = 36/39 (92%)
 Frame = +1

Query: 301 TSAATNVTYDHRALVIDGVRRVLVSGSIHYPRSTPDTWP 417
           ++A+ +V+YDH+A++I+G +R+L+SGSIHYPRSTP+ WP
Sbjct: 20  SAASASVSYDHKAIIINGQKRILISGSIHYPRSTPEMWP 58



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>BGAL_ASPOF (P45582) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase)|
          Length = 832

 Score = 61.6 bits (148), Expect = 7e-10
 Identities = 23/38 (60%), Positives = 33/38 (86%)
 Frame = +1

Query: 304 SAATNVTYDHRALVIDGVRRVLVSGSIHYPRSTPDTWP 417
           +   +VTYDH++++I+G RR+L+SGSIHYPRSTP+ WP
Sbjct: 22  AVTASVTYDHKSVIINGQRRILISGSIHYPRSTPEMWP 59



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>BGAL_LYCES (P48980) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase) (Acid|
           beta-galactosidase) (Exo-(1-->4)-beta-D-galactanase)
          Length = 835

 Score = 59.7 bits (143), Expect = 3e-09
 Identities = 21/34 (61%), Positives = 32/34 (94%)
 Frame = +1

Query: 316 NVTYDHRALVIDGVRRVLVSGSIHYPRSTPDTWP 417
           +V+YDH+A++++G R++L+SGSIHYPRSTP+ WP
Sbjct: 23  SVSYDHKAIIVNGQRKILISGSIHYPRSTPEMWP 56



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>BGAL_BRAOL (P49676) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase)|
          Length = 828

 Score = 58.9 bits (141), Expect = 5e-09
 Identities = 25/40 (62%), Positives = 33/40 (82%)
 Frame = +1

Query: 298 GTSAATNVTYDHRALVIDGVRRVLVSGSIHYPRSTPDTWP 417
           G++ +T V++D RA+ IDG RR+L+SGSIHYPRST D WP
Sbjct: 20  GSANSTIVSHDERAITIDGQRRILLSGSIHYPRSTSDMWP 59



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>BGAL_DIACA (Q00662) Putative beta-galactosidase precursor (EC 3.2.1.23)|
           (Lactase) (SR12 protein)
          Length = 731

 Score = 55.5 bits (132), Expect = 5e-08
 Identities = 23/34 (67%), Positives = 29/34 (85%)
 Frame = +1

Query: 316 NVTYDHRALVIDGVRRVLVSGSIHYPRSTPDTWP 417
           NV YD+RA+ I+  RR+L+SGSIHYPRSTP+ WP
Sbjct: 30  NVWYDYRAIKINDQRRILLSGSIHYPRSTPEMWP 63



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>TTGH_PSEPU (Q93PU4) Toluene efflux pump membrane transporter ttgH|
          Length = 1049

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -1

Query: 223 RSPEKKQRQGLHLVRGMMAFGVLAELVAR 137
           R PE+ QRQGL +V+  M F ++  LV R
Sbjct: 117 RLPEEVQRQGLRVVKYQMNFFLVMSLVDR 145



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>SRPB_PSEPU (O31100) Solvent resistant pump membrane transporter srpB|
          Length = 1049

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -1

Query: 223 RSPEKKQRQGLHLVRGMMAFGVLAELVAR 137
           R PE+ QRQGL +V+  M F ++  LV R
Sbjct: 117 RLPEEVQRQGLRVVKYQMNFFLVMSLVDR 145


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.313    0.126    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,963,269
Number of Sequences: 219361
Number of extensions: 337310
Number of successful extensions: 838
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2286875994
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
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