ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl54d04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK072345.1| Oryza sativa (japonica cultivar-group) cDNA clon... 361 1e-96
2dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 254 2e-64
3gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 254 2e-64
4emb|AL954871.5|CNS08CDA Oryza sativa chromosome 12, . BAC OSJNBb... 254 2e-64
5emb|AL845342.2|CNS08CB4 Oryza sativa chromosome 12, . BAC OSJNBa... 254 2e-64
6ref|NM_124824.3| Arabidopsis thaliana unknown protein AT5G54440 ... 44 0.39
7emb|AL451185.14| Human DNA sequence from clone RP11-136C6 on chr... 44 0.39
8gb|AY090975.1| Arabidopsis thaliana At5g54440 mRNA sequence 44 0.39
9gb|AC010388.6| Homo sapiens chromosome 5 clone CTD-2075D11, comp... 44 0.39
10gb|AC121495.11| Mus musculus chromosome 18, clone RP24-181M14, c... 42 1.6
11gb|AC135291.4| Mus musculus BAC clone RP23-69G18 from chromosome... 42 1.6
12gb|AC122745.10| Mus musculus chromosome 18, clone RP23-133M21, c... 42 1.6
13emb|AL022313.1|HS1119A7 Human DNA sequence from clone RP5-1119A7... 42 1.6
14gb|AC091967.3| Homo sapiens chromosome 5 clone RP11-489I4, compl... 42 1.6
15dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
16gb|AC091978.3| Homo sapiens chromosome 5 clone RP11-531A21, comp... 42 1.6
17dbj|AP005261.4| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
18dbj|AP004299.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
19ref|XM_480502.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.1
20gb|AC120237.5| Rattus norvegicus 1 BAC CH230-453N3 (Children's H... 40 6.1
21gb|AC121785.3| Mus musculus BAC clone RP23-382K4 from chromosome... 40 6.1
22gb|AC133171.5| Mus musculus BAC clone RP24-271D14 from chromosom... 40 6.1
23emb|CR855267.20| Zebrafish DNA sequence from clone DKEY-220L13, ... 40 6.1
24emb|AL939124.1|SCO939124 Streptomyces coelicolor A3(2) complete ... 40 6.1
25dbj|AP007152.1| Aspergillus oryzae RIB40 genomic DNA, SC308 40 6.1
26dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
27gb|AC158660.4| Mus musculus 6 BAC RP23-387H1 (Roswell Park Cance... 40 6.1
28gb|AF521923.1| Phytophthora infestans clone 6-17 mRNA sequence 40 6.1
29dbj|AP005441.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
30gb|AC150274.2| Mus musculus BAC clone RP23-348G11 from 18, compl... 40 6.1

>dbj|AK072345.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023049N15, full
           insert sequence
          Length = 4187

 Score =  361 bits (182), Expect = 1e-96
 Identities = 278/310 (89%)
 Strand = Plus / Plus

                                                                       
Query: 142 atggccaactatctggcacagttccagaccatcaagtcctcctccgaccgcatcgtcatc 201
           ||||| ||||| || || ||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 188 atggcgaactacctcgcgcagttccagaccatcaagtcctcctgcgaccgcatcgtcgtc 247

                                                                       
Query: 202 gccgttgaggatgtcagtgacttgtggctcaacgtcaaagatagtttcaagcagcgcttg 261
           |||||||| ||||| ||||||||||||||||| || ||||| |||||| |||| ||||| 
Sbjct: 248 gccgttgaagatgtgagtgacttgtggctcaatgtgaaagaaagtttcgagcaacgctta 307

                                                                       
Query: 262 ccagtcaagaaagcctgtctcaataacaaggcgaggaaccctgttcttgtggaaaaccta 321
           ||||| ||||| ||||| |||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 308 ccagtgaagaaggcctgcctcaataacaaggcgaggaatcctgtttttgtggaaaaccta 367

                                                                       
Query: 322 ccagccgagtttatacagacaactgattcaaggctgcgtagtcggtttccacaagaacaa 381
           ||||| |||||||||||||| |||||||| ||||| |||||||| ||||||||||| |||
Sbjct: 368 ccagctgagtttatacagaccactgattcgaggctacgtagtcgatttccacaagatcaa 427

                                                                       
Query: 382 tacttgttttgatttcgcgaaccgtatgctactgttgttcttgttacttgcgaggatctt 441
           ||||||||||| || || ||||| ||||| |||||||||||||| | |||||||||||||
Sbjct: 428 tacttgttttggttccgggaaccatatgcaactgttgttcttgtcagttgcgaggatctt 487

                     
Query: 442 gatgagttca 451
           ||||||||||
Sbjct: 488 gatgagttca 497



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  254 bits (128), Expect = 2e-64
 Identities = 206/232 (88%)
 Strand = Plus / Minus

                                                                            
Query: 205      gttgaggatgtcagtgacttgtggctcaacgtcaaagatagtttcaagcagcgcttgcca 264
                ||||| ||||| ||||||||||||||||| || ||||| |||||| |||| ||||| |||
Sbjct: 22562087 gttgaagatgtgagtgacttgtggctcaatgtgaaagaaagtttcgagcaacgcttacca 22562028

                                                                            
Query: 265      gtcaagaaagcctgtctcaataacaaggcgaggaaccctgttcttgtggaaaacctacca 324
                || ||||| ||||| |||||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 22562027 gtgaagaaggcctgcctcaataacaaggcgaggaatcctgtttttgtggaaaacctacca 22561968

                                                                            
Query: 325      gccgagtttatacagacaactgattcaaggctgcgtagtcggtttccacaagaacaatac 384
                || |||||||||||||| |||||||| ||||| |||||||| ||||||||||| ||||||
Sbjct: 22561967 gctgagtttatacagaccactgattcgaggctacgtagtcgatttccacaagatcaatac 22561908

                                                                    
Query: 385      ttgttttgatttcgcgaaccgtatgctactgttgttcttgttacttgcgagg 436
                |||||||| || || ||||| ||||| |||||||||||||| | ||||||||
Sbjct: 22561907 ttgttttggttccgggaaccatatgcaactgttgttcttgtcagttgcgagg 22561856



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 58/64 (90%)
 Strand = Plus / Minus

                                                                            
Query: 142      atggccaactatctggcacagttccagaccatcaagtcctcctccgaccgcatcgtcatc 201
                ||||| ||||| || || ||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 22562685 atggcgaactacctcgcgcagttccagaccatcaagtcctcctgcgaccgcatcgtcgtc 22562626

                    
Query: 202      gccg 205
                ||||
Sbjct: 22562625 gccg 22562622



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  254 bits (128), Expect = 2e-64
 Identities = 206/232 (88%)
 Strand = Plus / Minus

                                                                            
Query: 205      gttgaggatgtcagtgacttgtggctcaacgtcaaagatagtttcaagcagcgcttgcca 264
                ||||| ||||| ||||||||||||||||| || ||||| |||||| |||| ||||| |||
Sbjct: 22490432 gttgaagatgtgagtgacttgtggctcaatgtgaaagaaagtttcgagcaacgcttacca 22490373

                                                                            
Query: 265      gtcaagaaagcctgtctcaataacaaggcgaggaaccctgttcttgtggaaaacctacca 324
                || ||||| ||||| |||||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 22490372 gtgaagaaggcctgcctcaataacaaggcgaggaatcctgtttttgtggaaaacctacca 22490313

                                                                            
Query: 325      gccgagtttatacagacaactgattcaaggctgcgtagtcggtttccacaagaacaatac 384
                || |||||||||||||| |||||||| ||||| |||||||| ||||||||||| ||||||
Sbjct: 22490312 gctgagtttatacagaccactgattcgaggctacgtagtcgatttccacaagatcaatac 22490253

                                                                    
Query: 385      ttgttttgatttcgcgaaccgtatgctactgttgttcttgttacttgcgagg 436
                |||||||| || || ||||| ||||| |||||||||||||| | ||||||||
Sbjct: 22490252 ttgttttggttccgggaaccatatgcaactgttgttcttgtcagttgcgagg 22490201



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 58/64 (90%)
 Strand = Plus / Minus

                                                                            
Query: 142      atggccaactatctggcacagttccagaccatcaagtcctcctccgaccgcatcgtcatc 201
                ||||| ||||| || || ||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 22491030 atggcgaactacctcgcgcagttccagaccatcaagtcctcctgcgaccgcatcgtcgtc 22490971

                    
Query: 202      gccg 205
                ||||
Sbjct: 22490970 gccg 22490967



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>emb|AL954871.5|CNS08CDA Oryza sativa chromosome 12, . BAC OSJNBb0085B24 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 131441

 Score =  254 bits (128), Expect = 2e-64
 Identities = 206/232 (88%)
 Strand = Plus / Minus

                                                                         
Query: 205   gttgaggatgtcagtgacttgtggctcaacgtcaaagatagtttcaagcagcgcttgcca 264
             ||||| ||||| ||||||||||||||||| || ||||| |||||| |||| ||||| |||
Sbjct: 64666 gttgaagatgtgagtgacttgtggctcaatgtgaaagaaagtttcgagcaacgcttacca 64607

                                                                         
Query: 265   gtcaagaaagcctgtctcaataacaaggcgaggaaccctgttcttgtggaaaacctacca 324
             || ||||| ||||| |||||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 64606 gtgaagaaggcctgcctcaataacaaggcgaggaatcctgtttttgtggaaaacctacca 64547

                                                                         
Query: 325   gccgagtttatacagacaactgattcaaggctgcgtagtcggtttccacaagaacaatac 384
             || |||||||||||||| |||||||| ||||| |||||||| ||||||||||| ||||||
Sbjct: 64546 gctgagtttatacagaccactgattcgaggctacgtagtcgatttccacaagatcaatac 64487

                                                                 
Query: 385   ttgttttgatttcgcgaaccgtatgctactgttgttcttgttacttgcgagg 436
             |||||||| || || ||||| ||||| |||||||||||||| | ||||||||
Sbjct: 64486 ttgttttggttccgggaaccatatgcaactgttgttcttgtcagttgcgagg 64435



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 58/64 (90%)
 Strand = Plus / Minus

                                                                         
Query: 142   atggccaactatctggcacagttccagaccatcaagtcctcctccgaccgcatcgtcatc 201
             ||||| ||||| || || ||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 65264 atggcgaactacctcgcgcagttccagaccatcaagtcctcctgcgaccgcatcgtcgtc 65205

                 
Query: 202   gccg 205
             ||||
Sbjct: 65204 gccg 65201



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>emb|AL845342.2|CNS08CB4 Oryza sativa chromosome 12, . BAC OSJNBa0027H05 of library OSJNBa
            from chromosome 12 of cultivar Nipponbare of ssp.
            japonica of Oryza sativa (rice), complete sequence
          Length = 138368

 Score =  254 bits (128), Expect = 2e-64
 Identities = 206/232 (88%)
 Strand = Plus / Minus

                                                                        
Query: 205  gttgaggatgtcagtgacttgtggctcaacgtcaaagatagtttcaagcagcgcttgcca 264
            ||||| ||||| ||||||||||||||||| || ||||| |||||| |||| ||||| |||
Sbjct: 7361 gttgaagatgtgagtgacttgtggctcaatgtgaaagaaagtttcgagcaacgcttacca 7302

                                                                        
Query: 265  gtcaagaaagcctgtctcaataacaaggcgaggaaccctgttcttgtggaaaacctacca 324
            || ||||| ||||| |||||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 7301 gtgaagaaggcctgcctcaataacaaggcgaggaatcctgtttttgtggaaaacctacca 7242

                                                                        
Query: 325  gccgagtttatacagacaactgattcaaggctgcgtagtcggtttccacaagaacaatac 384
            || |||||||||||||| |||||||| ||||| |||||||| ||||||||||| ||||||
Sbjct: 7241 gctgagtttatacagaccactgattcgaggctacgtagtcgatttccacaagatcaatac 7182

                                                                
Query: 385  ttgttttgatttcgcgaaccgtatgctactgttgttcttgttacttgcgagg 436
            |||||||| || || ||||| ||||| |||||||||||||| | ||||||||
Sbjct: 7181 ttgttttggttccgggaaccatatgcaactgttgttcttgtcagttgcgagg 7130



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 58/64 (90%)
 Strand = Plus / Minus

                                                                        
Query: 142  atggccaactatctggcacagttccagaccatcaagtcctcctccgaccgcatcgtcatc 201
            ||||| ||||| || || ||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 7959 atggcgaactacctcgcgcagttccagaccatcaagtcctcctgcgaccgcatcgtcgtc 7900

                
Query: 202  gccg 205
            ||||
Sbjct: 7899 gccg 7896



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>ref|NM_124824.3| Arabidopsis thaliana unknown protein AT5G54440 mRNA, complete cds
          Length = 4033

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 79/98 (80%)
 Strand = Plus / Plus

                                                                       
Query: 352 aggctgcgtagtcggtttccacaagaacaatacttgttttgatttcgcgaaccgtatgct 411
           ||||| |||||||| || || || || || || ||||| || ||||| ||||| || || 
Sbjct: 331 aggcttcgtagtcgattcccgcaggagcagtatttgttctggtttcgagaaccatacgca 390

                                                 
Query: 412 actgttgttcttgttacttgcgaggatcttgatgagtt 449
           ||| | |||||||| || || |||||||||||||||||
Sbjct: 391 actatagttcttgtcacatgtgaggatcttgatgagtt 428



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>emb|AL451185.14| Human DNA sequence from clone RP11-136C6 on chromosome 6 Contains the
             KCNK5 gene for potassium channel subfamily K member 5
             (TASK-2) and a CpG island, complete sequence
          Length = 101841

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 5     tcccctcccctccgcatctcgccactcccc 34
             ||||||||||||| |||||| |||||||||
Sbjct: 86719 tcccctcccctccccatctccccactcccc 86748



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>gb|AY090975.1| Arabidopsis thaliana At5g54440 mRNA sequence
          Length = 4025

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 79/98 (80%)
 Strand = Plus / Plus

                                                                       
Query: 352 aggctgcgtagtcggtttccacaagaacaatacttgttttgatttcgcgaaccgtatgct 411
           ||||| |||||||| || || || || || || ||||| || ||||| ||||| || || 
Sbjct: 331 aggcttcgtagtcgattcccgcaggagcagtatttgttctggtttcgagaaccatacgca 390

                                                 
Query: 412 actgttgttcttgttacttgcgaggatcttgatgagtt 449
           ||| | |||||||| || || |||||||||||||||||
Sbjct: 391 actatagttcttgtcacatgtgaggatcttgatgagtt 428



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>gb|AC010388.6| Homo sapiens chromosome 5 clone CTD-2075D11, complete sequence
          Length = 159766

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 5      tcccctcccctccgcatctcgccactcccc 34
              ||||||||||||| |||||| |||||||||
Sbjct: 129229 tcccctcccctccccatctccccactcccc 129258



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>gb|AC121495.11| Mus musculus chromosome 18, clone RP24-181M14, complete sequence
          Length = 195507

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 295   aggaaccctgttcttgtggaa 315
             |||||||||||||||||||||
Sbjct: 20832 aggaaccctgttcttgtggaa 20852



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>gb|AC135291.4| Mus musculus BAC clone RP23-69G18 from chromosome 18, complete sequence
          Length = 180673

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 295   aggaaccctgttcttgtggaa 315
             |||||||||||||||||||||
Sbjct: 19176 aggaaccctgttcttgtggaa 19156



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>gb|AC122745.10| Mus musculus chromosome 18, clone RP23-133M21, complete sequence
          Length = 200776

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 295   aggaaccctgttcttgtggaa 315
             |||||||||||||||||||||
Sbjct: 26899 aggaaccctgttcttgtggaa 26879



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>emb|AL022313.1|HS1119A7 Human DNA sequence from clone RP5-1119A7 on chromosome 22q12.2-12.3,
             complete sequence
          Length = 127145

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 257   gcttgccagtcaagaaagcct 277
             |||||||||||||||||||||
Sbjct: 18854 gcttgccagtcaagaaagcct 18834



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>gb|AC091967.3| Homo sapiens chromosome 5 clone RP11-489I4, complete sequence
          Length = 187245

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 301    cctgttcttgtggaaaaccta 321
              |||||||||||||||||||||
Sbjct: 134552 cctgttcttgtggaaaaccta 134572



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                 
Query: 2        ctctcccctcccctccgcatctcgccactcccc 34
                |||||||||||||||| |||||| || ||||||
Sbjct: 17333295 ctctcccctcccctccacatctctcctctcccc 17333263



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>gb|AC091978.3| Homo sapiens chromosome 5 clone RP11-531A21, complete sequence
          Length = 192708

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 301    cctgttcttgtggaaaaccta 321
              |||||||||||||||||||||
Sbjct: 143690 cctgttcttgtggaaaaccta 143670



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>dbj|AP005261.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0640E12
          Length = 167353

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                               
Query: 2      ctctcccctcccctccgcatctcgccactcccc 34
              |||||||||||||||| |||||| || ||||||
Sbjct: 138420 ctctcccctcccctccacatctctcctctcccc 138388



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>dbj|AP004299.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
            clone:P0434A03
          Length = 146505

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 2    ctctcccctcccctccgcatctcgccactcccc 34
            |||||||||||||||| |||||| || ||||||
Sbjct: 1519 ctctcccctcccctccacatctctcctctcccc 1487



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>ref|XM_480502.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2931

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 46   tgtctccggcgacctccctg 65
            ||||||||||||||||||||
Sbjct: 1195 tgtctccggcgacctccctg 1176



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>gb|AC120237.5| Rattus norvegicus 1 BAC CH230-453N3 (Children's Hospital Oakland
             Research Institute Rat (BN/SsNHsd/MCW) BAC library)
             complete sequence
          Length = 150760

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 268   aagaaagcctgtctcaataa 287
             ||||||||||||||||||||
Sbjct: 61016 aagaaagcctgtctcaataa 60997



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>gb|AC121785.3| Mus musculus BAC clone RP23-382K4 from chromosome 3, complete sequence
          Length = 197272

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 211   gatgtcagtgacttgtggct 230
             ||||||||||||||||||||
Sbjct: 71166 gatgtcagtgacttgtggct 71185



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>gb|AC133171.5| Mus musculus BAC clone RP24-271D14 from chromosome 18, complete sequence
          Length = 126873

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 372    acaagaacaatacttgtttt 391
              ||||||||||||||||||||
Sbjct: 124284 acaagaacaatacttgtttt 124303



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>emb|CR855267.20| Zebrafish DNA sequence from clone DKEY-220L13, complete sequence
          Length = 142801

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 374  aagaacaatacttgttttgatttc 397
            ||||||||||||| ||||||||||
Sbjct: 5247 aagaacaatacttcttttgatttc 5224



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>emb|AL939124.1|SCO939124 Streptomyces coelicolor A3(2) complete genome; segment 21/29
          Length = 308050

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 186    cgaccgcatcgtcatcgccg 205
              ||||||||||||||||||||
Sbjct: 288061 cgaccgcatcgtcatcgccg 288080



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>dbj|AP007152.1| Aspergillus oryzae RIB40 genomic DNA, SC308
          Length = 51359

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 409   gctactgttgttcttgttac 428
             ||||||||||||||||||||
Sbjct: 15686 gctactgttgttcttgttac 15705



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 46      tgtctccggcgacctccctg 65
               ||||||||||||||||||||
Sbjct: 5461766 tgtctccggcgacctccctg 5461785



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>gb|AC158660.4| Mus musculus 6 BAC RP23-387H1 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 199439

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 367   tttccacaagaacaatactt 386
             ||||||||||||||||||||
Sbjct: 51200 tttccacaagaacaatactt 51181



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>gb|AF521923.1| Phytophthora infestans clone 6-17 mRNA sequence
          Length = 289

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 254 agcgcttgccagtcaagaaagcct 277
           ||||||||||| ||||||||||||
Sbjct: 73  agcgcttgccattcaagaaagcct 50



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>dbj|AP005441.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBa0056O06
          Length = 151038

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 46     tgtctccggcgacctccctg 65
              ||||||||||||||||||||
Sbjct: 131577 tgtctccggcgacctccctg 131596



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>gb|AC150274.2| Mus musculus BAC clone RP23-348G11 from 18, complete sequence
          Length = 194318

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 372   acaagaacaatacttgtttt 391
             ||||||||||||||||||||
Sbjct: 54158 acaagaacaatacttgtttt 54177


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,556,860
Number of Sequences: 3902068
Number of extensions: 3556860
Number of successful extensions: 124948
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 124667
Number of HSP's gapped (non-prelim): 281
length of query: 455
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 433
effective length of database: 17,147,199,772
effective search space: 7424737501276
effective search space used: 7424737501276
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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