>TCPZ_YEAST (P39079) T-complex protein 1 subunit zeta (TCP-1-zeta) (CCT-zeta)|
          Length = 546

 Score = 34.3 bits (77), Expect = 0.16
 Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 8/108 (7%)
 Frame = +2

Query: 65  EPKSSHTTVANSLPSTLESPNTSIRASVSDRAKLFKDKYFPSEPGSSDIAVTDNL--LKL 238
           +PKS    +  S    L     ++R  +   A + KDK      G+  IA++  L    +
Sbjct: 372 DPKSCTILIKGSTHYALAQTKDAVRDGLRAVANVLKDKNIIPGAGAFYIALSRYLRSANM 431

Query: 239 RALCAK------LNATADTVKTKAKGKSKSLGGDDFDILCNVEEQLDD 364
             L AK      + A A+ +    K   K+ G D  D+L  VE++LDD
Sbjct: 432 NKLGAKGKTKTGIEAFAEALLVIPKTLVKNSGFDPLDVLAMVEDELDD 479

>KITH_MYCH2 (Q5ZZT0) Thymidine kinase (EC 2.7.1.21)|
          Length = 184

 Score = 33.1 bits (74), Expect = 0.35
 Identities = 21/63 (33%), Positives = 34/63 (53%)
 Frame = +2

Query: 134 IRASVSDRAKLFKDKYFPSEPGSSDIAVTDNLLKLRALCAKLNATADTVKTKAKGKSKSL 313
           IR  VS   + F+ K F S P    +A+ +N+ KL+A+C+     A T   K   ++++L
Sbjct: 110 IRVIVSGLDQDFRRKPFGSLPNL--MAIAENVTKLQAVCSLCKRAATTTARKVLNEAQTL 167

Query: 314 GGD 322
            GD
Sbjct: 168 IGD 170

>FUTSC_DROME (Q9W596) Microtubule-associated protein futsch|
          Length = 5412

 Score = 32.3 bits (72), Expect = 0.59
 Identities = 24/124 (19%), Positives = 49/124 (39%), Gaps = 7/124 (5%)
 Frame = +2

Query: 56   SLDEPKSSHTTVANSLPSTLESPNTSIRASVSDRAKLFKDKYFPSEPGSSDIAVTDNLLK 235
            S +E +    T  + LPS   S  TS+  SV D A+  K++             +    +
Sbjct: 3890 SKEESRRESVTEKSPLPSKEASRPTSVAESVKDEAEKSKEESRRESVAEKSPLASKESSR 3949

Query: 236  LRALCAKLNATADTVKTKAK-------GKSKSLGGDDFDILCNVEEQLDDIIAKILSELS 394
              ++   +   A+  K +++       GK++S+ GD   +      + D ++  +  E  
Sbjct: 3950 PASVAESIKDEAEGTKQESRRESMPESGKAESIKGDQSSLASKETSRPDSVVESVKDETE 4009

Query: 395  NGDG 406
              +G
Sbjct: 4010 KPEG 4013

>RAD50_METJA (Q58718) DNA double-strand break repair rad50 ATPase|
          Length = 1005

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 33/121 (27%), Positives = 48/121 (39%)
 Frame = +2

Query: 47  DNNSLDEPKSSHTTVANSLPSTLESPNTSIRASVSDRAKLFKDKYFPSEPGSSDIAVTDN 226
           D N   E  + H T  N+  + LE  N  IR    D  KL K           +I   +N
Sbjct: 510 DENKKMELINQHKTQLNNKYTELEEINKKIREIEKDIEKLKK-----------EIDKEEN 558

Query: 227 LLKLRALCAKLNATADTVKTKAKGKSKSLGGDDFDILCNVEEQLDDIIAKILSELSNGDG 406
           L  L+ L  +  +  + ++ K K               N +EQLD+I  KI + + NG  
Sbjct: 559 LKTLKTLYLEKQSQIEELELKLK---------------NYKEQLDEINKKISNYVINGKP 603

Query: 407 V 409
           V
Sbjct: 604 V 604

>FOLC_CAEEL (Q09509) Putative folylpolyglutamate synthase (EC 6.3.2.17)|
           (Folylpoly-gamma-glutamate synthetase) (FPGS)
           (Tetrahydrofolate synthase)
           (Tetrahydrofolylpolyglutamate synthase)
          Length = 510

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = -3

Query: 240 RSFKRLSVTAISLEPGSEGKYLSLNNFAR-SLTEARILVFGLSSVLGSELATVVWELFGS 64
           R F +L+V  + LE G  G+Y   N   +  +     L +   S+LG++L+ + W   G 
Sbjct: 176 RIFVKLNVQVMILEVGIGGEYDCTNVVEKPKVCGVTTLDYDHMSILGNKLSEIAWHKAGI 235

Query: 63  SKELLSVF 40
            KE +  F
Sbjct: 236 FKESVPAF 243

>AQPZ1_AGRT5 (Q8UI24) Aquaporin Z 1|
          Length = 241

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
 Frame = -3

Query: 267 VAFNFAQSARSFKRLSVTAISLEPG-SEGKYLSLNNFARSLTEARILVFGLSSVLGSELA 91
           VA   A +      + VT  S+ P  S G+ L +  +A      ++ +F L+ +LG  + 
Sbjct: 162 VAIGLALTLIHLISIPVTNTSVNPARSTGQALFVGGWALQ----QLWLFWLAPILGGAIG 217

Query: 90  TVVWELFGSSKE 55
            VVW++FG  ++
Sbjct: 218 AVVWKIFGEEEK 229

>SCG3_MOUSE (P47867) Secretogranin-3 precursor (Secretogranin III) (SgIII)|
          Length = 471

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 3/111 (2%)
 Frame = +2

Query: 65  EPKSSHTTVANSLPSTLESP-NTSIRASVSDRAKLFKDKYFPSE--PGSSDIAVTDNLLK 235
           +P+ S     ++   + E P N  I  + +D+ K    K FPSE  P  S+ +  DNL  
Sbjct: 25  KPEGSQDKSLHNRELSAERPLNEQIAEAEADKIK----KAFPSESKPSESNYSSVDNLNL 80

Query: 236 LRALCAKLNATADTVKTKAKGKSKSLGGDDFDILCNVEEQLDDIIAKILSE 388
           LRA+         T K   + + +S+    FD   NVE+       K++ E
Sbjct: 81  LRAI---------TEKETVEKERQSIRSPPFDNQLNVEDADSTKNRKLIDE 122

>C556_AGRTA (P00141) Cytochrome c-556 (Cytochrome c556)|
          Length = 125

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = +2

Query: 143 SVSDRAKLFKDKYFPSEPGSSDI--AVTDNLLKLRALCAKLNATADTVKTKAKGKSKSLG 316
           ++++ AK F D++ P +   +++   + DNL   +A  AKL+  A+T   +       +G
Sbjct: 44  TIAETAKAFPDQFNPKDSTDAEVNPKIWDNLDDFKAKAAKLSTDAETALAQLPADQAGVG 103

>HWP1_CANAL (P46593) Hyphal wall protein 1 (Cell elongation protein 2)|
          Length = 634

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
 Frame = +2

Query: 35  AGNTDNNSLDEPKSS-HTTVANSLPSTLESPNTSI--RASVSDRAKLFKDKYFPSEPGSS 205
           + ++ ++S   PK+S  TT  +S+P+T  +PNTS+   +S S       +   P   GSS
Sbjct: 212 SSSSSSSSSTTPKTSASTTPESSVPAT--TPNTSVPTTSSESTTPATSPESSVPVTSGSS 269

Query: 206 DIAVTDNLLKLRALCAKLNATADTVKTKA 292
            +A T       A     +    T +TK+
Sbjct: 270 ILATTSESSSAPATTPNTSVPTTTTETKS 298

>FTHS_MOOTH (P21164) Formate--tetrahydrofolate ligase (EC 6.3.4.3)|
           (Formyltetrahydrofolate synthetase) (FHS) (FTHFS)
          Length = 559

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 12/71 (16%)
 Frame = +2

Query: 236 LRALCAKLNATADTVKTKAKGKSKSLG------------GDDFDILCNVEEQLDDIIAKI 379
           L  LCAK  A     +  AKG    L               +F +L N++  + D IAKI
Sbjct: 395 LYELCAKAGAEVALSEVWAKGGEGGLELARKVLQTLESRPSNFHVLYNLDLSIKDKIAKI 454

Query: 380 LSELSNGDGVS 412
            +E+   DGV+
Sbjct: 455 ATEIYGADGVN 465

>VNCS_PAVPK (P52502) Noncapsid protein NS-1 (Nonstructural protein NS1)|
          Length = 662

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -3

Query: 453 SNAEITPLPINSNVETPSPLLS--SDNILAMMSSNCSST 343
           +N  +TP P +S + TPSP  S    +I A    NC+ T
Sbjct: 620 TNLHLTPTPPDSAIRTPSPTWSEIETDIRACFGENCAPT 658

>HSCA_NEIMB (Q9JS04) Chaperone protein hscA homolog|
          Length = 620

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +2

Query: 257 LNATADTVKTKAKGKSKSLGGDDFD--ILCNVEEQ 355
           L  T    + KA G + +LGGDDFD  + C + EQ
Sbjct: 218 LQLTKGLFEVKATGGNSALGGDDFDHRLFCRLLEQ 252

>HSCA_NEIMA (Q9JUF4) Chaperone protein hscA homolog|
          Length = 620

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +2

Query: 257 LNATADTVKTKAKGKSKSLGGDDFD--ILCNVEEQ 355
           L  T    + KA G + +LGGDDFD  + C + EQ
Sbjct: 218 LQLTKGLFEVKATGGNSALGGDDFDHRLFCRLLEQ 252

>RBCC1_HUMAN (Q8TDY2) RB1-inducible coiled-coil protein 1|
          Length = 1594

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 25/111 (22%), Positives = 52/111 (46%), Gaps = 3/111 (2%)
 Frame = +2

Query: 71   KSSHTTVANSLPSTLESPNTSIRASVSDRAKLFKDKYFPSEPGSSDIAVTDNLLK---LR 241
            + S      +L S LE    ++R  +S   +  +D     + G +++     + K   + 
Sbjct: 1079 EESRAQQKETLKSLLEQETENLRTEISKLNQKIQDNNENYQVGLAELRTLMTIEKDQCIS 1138

Query: 242  ALCAKLNATADTVKTKAKGKSKSLGGDDFDILCNVEEQLDDIIAKILSELS 394
             L ++    ++ +K +   K  SL    F+I  N++EQ+ ++ +K+ SELS
Sbjct: 1139 ELISRHEEESNILKAELN-KVTSLHNQAFEIEKNLKEQIIELQSKLDSELS 1188

>HSCA_NEIG1 (Q5F8E8) Chaperone protein hscA homolog|
          Length = 620

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +2

Query: 257 LNATADTVKTKAKGKSKSLGGDDFD--ILCNVEEQ 355
           L  T    + KA G + +LGGDDFD  + C + EQ
Sbjct: 218 LQLTKGLFEVKATGGNSALGGDDFDHRLFCYLLEQ 252

>Y1836_MYCTU (Q50597) Hypothetical protein Rv1836c/MT1884|
          Length = 677

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 14/71 (19%)
 Frame = +2

Query: 65  EPKSSHTTVANSLPSTLESPNTSIRASVSD---------RAKLFKDKYFPSEPG-----S 202
           +P SS  T   +LPSTL   + S+RA+++D          A +  D+  P++ G     S
Sbjct: 449 KPPSSPVTSFPALPSTLSVGDDSMRATLADTMVTASAGVAATIMLDQSMPNDEGGNSRLS 508

Query: 203 SDIAVTDNLLK 235
           + +A  +N +K
Sbjct: 509 NVVAALENRIK 519

>EFTU_ARATH (P17745) Elongation factor Tu, chloroplast precursor (EF-Tu)|
          Length = 476

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +2

Query: 302 SKSLGGDDFDILCNVEEQLDDIIAKILSELSNGDGVSTFEFIGSGV 439
           +K +G  D  +  N E+Q+DD     L EL   + +S++EF G  +
Sbjct: 190 AKQVGVPDMVVFLNKEDQVDDAELLELVELEVRELLSSYEFNGDDI 235

>SYS_MYCTU (P67561) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)|
           (SerRS)
          Length = 419

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +2

Query: 206 DIAVTDNLLKLRALCAKLNATADTVKTKAKGKSKSLGG 319
           D A+ D LL   A    + +TAD+++ + K  SKS+GG
Sbjct: 24  DPALVDALLTADAARRAVISTADSLRAEQKAASKSVGG 61

>SYS_MYCBO (P67562) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)|
           (SerRS)
          Length = 419

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +2

Query: 206 DIAVTDNLLKLRALCAKLNATADTVKTKAKGKSKSLGG 319
           D A+ D LL   A    + +TAD+++ + K  SKS+GG
Sbjct: 24  DPALVDALLTADAARRAVISTADSLRAEQKAASKSVGG 61

>PI3K3_DICDI (P54675) Phosphatidylinositol 3-kinase 3 (EC 2.7.1.137)|
           (PI3-kinase) (PtdIns-3-kinase) (PI3K) (Fragment)
          Length = 1585

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
 Frame = +2

Query: 38  GNTDNNSLDEPKSSHTTVA--NSLPSTLESPNTSIRASVSDRAKLFKDKYFPSEPGSSDI 211
           GN +NN+ +   S++TT A  NS+  ++   N++   SVS R   FK  +  S+P SS I
Sbjct: 240 GNNNNNNSNNTNSNNTTNATTNSVGFSITMTNSN-SLSVSKRMNKFK-SWTSSKPTSSSI 297

>SCG3_RAT (P47868) Secretogranin-3 precursor (Secretogranin III) (SgIII)|
           (1B1075)
          Length = 471

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 3/99 (3%)
 Frame = +2

Query: 65  EPKSSHTTVANSLPSTLESP-NTSIRASVSDRAKLFKDKYFPSE--PGSSDIAVTDNLLK 235
           +P+ S     ++   + E P N  I  + +D+ K    K +PSE  P  S+ +  DNL  
Sbjct: 25  KPEGSQDKSLHNRELSAERPLNEQIAEAEADKIK----KTYPSESKPSESNFSSVDNLNL 80

Query: 236 LRALCAKLNATADTVKTKAKGKSKSLGGDDFDILCNVEE 352
           L+A+  K     +TV+ KAK   +S+    FD   NV++
Sbjct: 81  LKAITEK-----ETVE-KAK---QSIRSSPFDNRLNVDD 110


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,483,802
Number of Sequences: 219361
Number of extensions: 1005892
Number of successful extensions: 3658
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 3551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3653
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)