ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl55d02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y930_TREPA (O83900) Hypothetical protein TP0930 28 4.5

>Y930_TREPA (O83900) Hypothetical protein TP0930|
          Length = 573

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 175 SSHIQGNRQN*TIIRHCCCVRHSTH 249
           +SH   + Q   II HCC  RH TH
Sbjct: 443 TSHTVSHAQACEIITHCCTRRHRTH 467


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,317,185
Number of Sequences: 219361
Number of extensions: 491003
Number of successful extensions: 1032
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 80,573,946
effective HSP length: 80
effective length of database: 63,025,066
effective search space used: 1512601584
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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