ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl55f09 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_466019.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3549 Score = 153 bits (77), Expect = 4e-34 Identities = 127/143 (88%), Gaps = 3/143 (2%) Strand = Plus / Plus Query: 155 ggagcttcaggatggctaaggggcaaggtgaaggctgtgacttctggggactgccttctc 214 ||||| || |||||||| ||||| |||||||||| |||||||||||||||||| |||||| Sbjct: 237 ggagcgtctggatggctgaggggtaaggtgaagggtgtgacttctggggactgtcttctc 296 Query: 215 atcatggggagcaccaaggcagagatc---ccgccagagaagtccatcactctgtcatac 271 |||||||||||||||||||| || || ||||| |||||||| || |||||||||||| Sbjct: 297 atcatggggagcaccaaggcggatgtcccgccgcctgagaagtcgattactctgtcatac 356 Query: 272 cttatggccccaaggctggctcg 294 || |||||||||||||||||||| Sbjct: 357 ctcatggccccaaggctggctcg 379
>gb|AY320036.1| Oryza sativa (japonica cultivar-group) RNA binding protein Rp120 mRNA, complete cds Length = 2961 Score = 153 bits (77), Expect = 4e-34 Identities = 127/143 (88%), Gaps = 3/143 (2%) Strand = Plus / Plus Query: 155 ggagcttcaggatggctaaggggcaaggtgaaggctgtgacttctggggactgccttctc 214 ||||| || |||||||| ||||| |||||||||| |||||||||||||||||| |||||| Sbjct: 16 ggagcgtctggatggctgaggggtaaggtgaagggtgtgacttctggggactgtcttctc 75 Query: 215 atcatggggagcaccaaggcagagatc---ccgccagagaagtccatcactctgtcatac 271 |||||||||||||||||||| || || ||||| |||||||| || |||||||||||| Sbjct: 76 atcatggggagcaccaaggcggatgtcccgccgcctgagaagtcgattactctgtcatac 135 Query: 272 cttatggccccaaggctggctcg 294 || |||||||||||||||||||| Sbjct: 136 ctcatggccccaaggctggctcg 158
>dbj|AK065061.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001J15, full insert sequence Length = 3547 Score = 153 bits (77), Expect = 4e-34 Identities = 127/143 (88%), Gaps = 3/143 (2%) Strand = Plus / Plus Query: 155 ggagcttcaggatggctaaggggcaaggtgaaggctgtgacttctggggactgccttctc 214 ||||| || |||||||| ||||| |||||||||| |||||||||||||||||| |||||| Sbjct: 237 ggagcgtctggatggctgaggggtaaggtgaagggtgtgacttctggggactgtcttctc 296 Query: 215 atcatggggagcaccaaggcagagatc---ccgccagagaagtccatcactctgtcatac 271 |||||||||||||||||||| || || ||||| |||||||| || |||||||||||| Sbjct: 297 atcatggggagcaccaaggcggatgtcccgccgcctgagaagtcgattactctgtcatac 356 Query: 272 cttatggccccaaggctggctcg 294 || |||||||||||||||||||| Sbjct: 357 ctcatggccccaaggctggctcg 379
>gb|AY320037.1| Oryza sativa (japonica cultivar-group) RNA binding protein Rp120 gene, complete cds Length = 5478 Score = 145 bits (73), Expect = 9e-32 Identities = 123/139 (88%), Gaps = 3/139 (2%) Strand = Plus / Plus Query: 155 ggagcttcaggatggctaaggggcaaggtgaaggctgtgacttctggggactgccttctc 214 ||||| || |||||||| ||||| |||||||||| |||||||||||||||||| |||||| Sbjct: 45 ggagcgtctggatggctgaggggtaaggtgaagggtgtgacttctggggactgtcttctc 104 Query: 215 atcatggggagcaccaaggcagagatc---ccgccagagaagtccatcactctgtcatac 271 |||||||||||||||||||| || || ||||| |||||||| || |||||||||||| Sbjct: 105 atcatggggagcaccaaggcggatgtcccgccgcctgagaagtcgattactctgtcatac 164 Query: 272 cttatggccccaaggctgg 290 || |||||||||||||||| Sbjct: 165 ctcatggccccaaggctgg 183
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 145 bits (73), Expect = 9e-32 Identities = 123/139 (88%), Gaps = 3/139 (2%) Strand = Plus / Minus Query: 155 ggagcttcaggatggctaaggggcaaggtgaaggctgtgacttctggggactgccttctc 214 ||||| || |||||||| ||||| |||||||||| |||||||||||||||||| |||||| Sbjct: 19123886 ggagcgtctggatggctgaggggtaaggtgaagggtgtgacttctggggactgtcttctc 19123827 Query: 215 atcatggggagcaccaaggcagagatc---ccgccagagaagtccatcactctgtcatac 271 |||||||||||||||||||| || || ||||| |||||||| || |||||||||||| Sbjct: 19123826 atcatggggagcaccaaggcggatgtcccgccgcctgagaagtcgattactctgtcatac 19123767 Query: 272 cttatggccccaaggctgg 290 || |||||||||||||||| Sbjct: 19123766 ctcatggccccaaggctgg 19123748
>dbj|AP004772.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0415B12 Length = 157419 Score = 145 bits (73), Expect = 9e-32 Identities = 123/139 (88%), Gaps = 3/139 (2%) Strand = Plus / Minus Query: 155 ggagcttcaggatggctaaggggcaaggtgaaggctgtgacttctggggactgccttctc 214 ||||| || |||||||| ||||| |||||||||| |||||||||||||||||| |||||| Sbjct: 22135 ggagcgtctggatggctgaggggtaaggtgaagggtgtgacttctggggactgtcttctc 22076 Query: 215 atcatggggagcaccaaggcagagatc---ccgccagagaagtccatcactctgtcatac 271 |||||||||||||||||||| || || ||||| |||||||| || |||||||||||| Sbjct: 22075 atcatggggagcaccaaggcggatgtcccgccgcctgagaagtcgattactctgtcatac 22016 Query: 272 cttatggccccaaggctgg 290 || |||||||||||||||| Sbjct: 22015 ctcatggccccaaggctgg 21997
>dbj|AP005749.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0047A17 Length = 149142 Score = 145 bits (73), Expect = 9e-32 Identities = 123/139 (88%), Gaps = 3/139 (2%) Strand = Plus / Minus Query: 155 ggagcttcaggatggctaaggggcaaggtgaaggctgtgacttctggggactgccttctc 214 ||||| || |||||||| ||||| |||||||||| |||||||||||||||||| |||||| Sbjct: 129407 ggagcgtctggatggctgaggggtaaggtgaagggtgtgacttctggggactgtcttctc 129348 Query: 215 atcatggggagcaccaaggcagagatc---ccgccagagaagtccatcactctgtcatac 271 |||||||||||||||||||| || || ||||| |||||||| || |||||||||||| Sbjct: 129347 atcatggggagcaccaaggcggatgtcccgccgcctgagaagtcgattactctgtcatac 129288 Query: 272 cttatggccccaaggctgg 290 || |||||||||||||||| Sbjct: 129287 ctcatggccccaaggctgg 129269
>dbj|AB078603.1| Pisum sativum SN4TDR mRNA for 110 kDa 4SNc-Tudor domain protein, complete cds Length = 3379 Score = 52.0 bits (26), Expect = 0.001 Identities = 29/30 (96%) Strand = Plus / Plus Query: 179 aaggtgaaggctgtgacttctggggactgc 208 |||||||||||||| ||||||||||||||| Sbjct: 237 aaggtgaaggctgttacttctggggactgc 266
>dbj|AB078602.1| Pisum sativum mRNA for 110kDa protein HMP, partial cds Length = 1339 Score = 52.0 bits (26), Expect = 0.001 Identities = 29/30 (96%) Strand = Plus / Plus Query: 179 aaggtgaaggctgtgacttctggggactgc 208 |||||||||||||| ||||||||||||||| Sbjct: 237 aaggtgaaggctgttacttctggggactgc 266
>gb|AF440781.1| Streptomyces cinnamonensis polyether antibiotic monensin biosynthesis gene cluster, partial sequence Length = 103450 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Minus Query: 98 aggcggaggccgctcgccgccg 119 |||||||||||||||||||||| Sbjct: 60057 aggcggaggccgctcgccgccg 60036
>gb|AC125265.8| Mus musculus chromosome 6, clone RP24-444K24, complete sequence Length = 156056 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 245 ccagagaagtccatcactct 264 |||||||||||||||||||| Sbjct: 148918 ccagagaagtccatcactct 148937
>gb|DQ118863.1| Streptomyces fradiae strain NRRL18158 lipopeptide antibiotic A54145 biosynthetic gene cluster, complete sequence Length = 126933 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 ggcggaggccgctcgccgcc 118 |||||||||||||||||||| Sbjct: 32744 ggcggaggccgctcgccgcc 32763
>gb|AC159505.7| Mus musculus 6 BAC RP23-81D20 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 254457 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 ccagagaagtccatcactct 264 |||||||||||||||||||| Sbjct: 18393 ccagagaagtccatcactct 18374
>gb|AC153902.4| Mus musculus 6 BAC RP23-5K15 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 208717 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 245 ccagagaagtccatcactct 264 |||||||||||||||||||| Sbjct: 66033 ccagagaagtccatcactct 66052 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,604,840 Number of Sequences: 3902068 Number of extensions: 2604840 Number of successful extensions: 51517 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 51462 Number of HSP's gapped (non-prelim): 48 length of query: 296 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 274 effective length of database: 17,147,199,772 effective search space: 4698332737528 effective search space used: 4698332737528 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
