ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal9m17 |
|---|---|
| Clone Library Name | barley_pub |
>YPEB_SYNP2 (P42784) Hypothetical protein in petB 5'region (Fragment)| Length = 411 Score = 111 bits (277), Expect = 2e-24 Identities = 59/109 (54%), Positives = 76/109 (69%) Frame = -2 Query: 661 GQSLTHDPLVVLVNEESASASEILAGALHDNGRAILVGHKTFGKGRIQSVTELDDGSALF 482 GQ LT PLVVLVN+ +ASASEILAGAL DNGRA+LVG KTFGKG IQS+ EL DG+ + Sbjct: 292 GQPLTDAPLVVLVNQATASASEILAGALQDNGRAMLVGEKTFGKGLIQSLFELPDGAGMA 351 Query: 481 ITVAKYLSPALHEIDHIGIQPDIQCTADALSLPRAPSLTESNEAASLEM 335 +TVAKY +P H+I+ +GI PD + + S T+ A+L++ Sbjct: 352 VTVAKYETPLHHDINKLGIMPDEVVPQEPIGYAMMGSETDLQYQAALDL 400
>CTPA_SYNY3 (Q55669) Carboxyl-terminal-processing protease precursor (EC| 3.4.21.102) Length = 427 Score = 103 bits (258), Expect = 4e-22 Identities = 56/109 (51%), Positives = 72/109 (66%) Frame = -2 Query: 661 GQSLTHDPLVVLVNEESASASEILAGALHDNGRAILVGHKTFGKGRIQSVTELDDGSALF 482 G++ T PLVVLVN+ +ASASEILAGAL DN RA LVG KTFGKG IQS+ EL DG+ + Sbjct: 295 GEAATDRPLVVLVNQGTASASEILAGALQDNQRATLVGEKTFGKGLIQSLFELSDGAGIA 354 Query: 481 ITVAKYLSPALHEIDHIGIQPDIQCTADALSLPRAPSLTESNEAASLEM 335 +TVAKY +P H+I +GI PD +S S + A+L++ Sbjct: 355 VTVAKYETPQHHDIHKLGIMPDEVVEQPLISFAEITSPADVQYQAALDL 403
>CTPA_BARBA (Q44879) Carboxy-terminal-processing protease precursor (EC| 3.4.21.102) (C-terminal-processing protease) Length = 434 Score = 77.8 bits (190), Expect = 3e-14 Identities = 39/83 (46%), Positives = 55/83 (66%) Frame = -2 Query: 661 GQSLTHDPLVVLVNEESASASEILAGALHDNGRAILVGHKTFGKGRIQSVTELDDGSALF 482 G P++VL+N SASASEI+AGAL D+ RA ++G ++FGKG +Q++ L + AL Sbjct: 276 GDLTDEKPIIVLINGGSASASEIVAGALQDHRRATIIGTQSFGKGSVQTIIPLGENGALR 335 Query: 481 ITVAKYLSPALHEIDHIGIQPDI 413 +T A Y +P+ I IGI PDI Sbjct: 336 LTTALYYTPSGTSIQGIGITPDI 358
>CTPAL_STAHJ (Q4L6D0) Probable ctpA-like serine protease (EC 3.4.21.-)| Length = 496 Score = 73.6 bits (179), Expect = 5e-13 Identities = 38/72 (52%), Positives = 48/72 (66%) Frame = -2 Query: 631 VLVNEESASASEILAGALHDNGRAILVGHKTFGKGRIQSVTELDDGSALFITVAKYLSPA 452 +LVNE SASASE+ GA+ D+ +A + G KTFGKG +Q+ E DGS L T K+L+P Sbjct: 321 ILVNEGSASASEVFTGAMRDHKKAKVYGSKTFGKGIVQTTREFKDGSLLKYTQMKWLTPD 380 Query: 451 LHEIDHIGIQPD 416 H I GIQPD Sbjct: 381 GHNIHGKGIQPD 392
>CTPAL_STAEQ (Q5HPB7) Probable ctpA-like serine protease (EC 3.4.21.-)| Length = 491 Score = 73.2 bits (178), Expect = 7e-13 Identities = 40/88 (45%), Positives = 56/88 (63%) Frame = -2 Query: 631 VLVNEESASASEILAGALHDNGRAILVGHKTFGKGRIQSVTELDDGSALFITVAKYLSPA 452 +LVNE SASASE+ GA+ D +A + G KTFGKG +Q++ E DGS + T K+L+P Sbjct: 316 ILVNEGSASASEVFTGAMKDYHKAKVYGSKTFGKGIVQTIREFSDGSLIKYTEMKWLTPD 375 Query: 451 LHEIDHIGIQPDIQCTADALSLPRAPSL 368 H I GI+PD+ ++S P+ SL Sbjct: 376 GHYIHGKGIRPDV-----SISTPKYQSL 398
>CTPAL_STAAW (Q8NWR2) Probable ctpA-like serine protease (EC 3.4.21.-)| Length = 496 Score = 72.4 bits (176), Expect = 1e-12 Identities = 38/73 (52%), Positives = 48/73 (65%) Frame = -2 Query: 631 VLVNEESASASEILAGALHDNGRAILVGHKTFGKGRIQSVTELDDGSALFITVAKYLSPA 452 +LVNE SASASE+ GAL D +A + G KTFGKG +Q+ E DGS L T K+L+P Sbjct: 321 ILVNEGSASASEVFTGALKDYNKAKVYGSKTFGKGVVQTTREFKDGSLLKYTEMKWLTPD 380 Query: 451 LHEIDHIGIQPDI 413 H I GI+PD+ Sbjct: 381 GHYIHGKGIKPDV 393
>CTPAL_STAAS (Q6G9E1) Probable ctpA-like serine protease (EC 3.4.21.-)| Length = 496 Score = 72.4 bits (176), Expect = 1e-12 Identities = 38/73 (52%), Positives = 48/73 (65%) Frame = -2 Query: 631 VLVNEESASASEILAGALHDNGRAILVGHKTFGKGRIQSVTELDDGSALFITVAKYLSPA 452 +LVNE SASASE+ GAL D +A + G KTFGKG +Q+ E DGS L T K+L+P Sbjct: 321 ILVNEGSASASEVFTGALKDYNKAKVYGSKTFGKGVVQTTREFKDGSLLKYTEMKWLTPD 380 Query: 451 LHEIDHIGIQPDI 413 H I GI+PD+ Sbjct: 381 GHYIHGKGIKPDV 393
>CTPAL_STAAR (Q6GGY8) Probable ctpA-like serine protease (EC 3.4.21.-)| Length = 496 Score = 72.4 bits (176), Expect = 1e-12 Identities = 38/73 (52%), Positives = 48/73 (65%) Frame = -2 Query: 631 VLVNEESASASEILAGALHDNGRAILVGHKTFGKGRIQSVTELDDGSALFITVAKYLSPA 452 +LVNE SASASE+ GAL D +A + G KTFGKG +Q+ E DGS L T K+L+P Sbjct: 321 ILVNEGSASASEVFTGALKDYNKAKVYGSKTFGKGVVQTTREFKDGSLLKYTEMKWLTPD 380 Query: 451 LHEIDHIGIQPDI 413 H I GI+PD+ Sbjct: 381 GHYIHGKGIKPDV 393
>CTPAL_STAAN (Q7A5M9) Probable ctpA-like serine protease (EC 3.4.21.-)| Length = 496 Score = 72.4 bits (176), Expect = 1e-12 Identities = 38/73 (52%), Positives = 48/73 (65%) Frame = -2 Query: 631 VLVNEESASASEILAGALHDNGRAILVGHKTFGKGRIQSVTELDDGSALFITVAKYLSPA 452 +LVNE SASASE+ GAL D +A + G KTFGKG +Q+ E DGS L T K+L+P Sbjct: 321 ILVNEGSASASEVFTGALKDYNKAKVYGSKTFGKGVVQTTREFKDGSLLKYTEMKWLTPD 380 Query: 451 LHEIDHIGIQPDI 413 H I GI+PD+ Sbjct: 381 GHYIHGKGIKPDV 393
>CTPAL_STAAM (Q99U67) Probable ctpA-like serine protease (EC 3.4.21.-)| Length = 496 Score = 72.4 bits (176), Expect = 1e-12 Identities = 38/73 (52%), Positives = 48/73 (65%) Frame = -2 Query: 631 VLVNEESASASEILAGALHDNGRAILVGHKTFGKGRIQSVTELDDGSALFITVAKYLSPA 452 +LVNE SASASE+ GAL D +A + G KTFGKG +Q+ E DGS L T K+L+P Sbjct: 321 ILVNEGSASASEVFTGALKDYNKAKVYGSKTFGKGVVQTTREFKDGSLLKYTEMKWLTPD 380 Query: 451 LHEIDHIGIQPDI 413 H I GI+PD+ Sbjct: 381 GHYIHGKGIKPDV 393
>CTPAL_STAAC (Q5HG01) Probable ctpA-like serine protease (EC 3.4.21.-)| Length = 496 Score = 72.4 bits (176), Expect = 1e-12 Identities = 38/73 (52%), Positives = 48/73 (65%) Frame = -2 Query: 631 VLVNEESASASEILAGALHDNGRAILVGHKTFGKGRIQSVTELDDGSALFITVAKYLSPA 452 +LVNE SASASE+ GAL D +A + G KTFGKG +Q+ E DGS L T K+L+P Sbjct: 321 ILVNEGSASASEVFTGALKDYNKAKVYGSKTFGKGVVQTTREFKDGSLLKYTEMKWLTPD 380 Query: 451 LHEIDHIGIQPDI 413 H I GI+PD+ Sbjct: 381 GHYIHGKGIKPDV 393
>CTPAL_STAAB (Q2YXZ9) Probable ctpA-like serine protease (EC 3.4.21.-)| Length = 496 Score = 72.4 bits (176), Expect = 1e-12 Identities = 38/73 (52%), Positives = 48/73 (65%) Frame = -2 Query: 631 VLVNEESASASEILAGALHDNGRAILVGHKTFGKGRIQSVTELDDGSALFITVAKYLSPA 452 +LVNE SASASE+ GAL D +A + G KTFGKG +Q+ E DGS L T K+L+P Sbjct: 321 ILVNEGSASASEVFTGALKDYNKAKVYGSKTFGKGVVQTTREFKDGSLLKYTEMKWLTPD 380 Query: 451 LHEIDHIGIQPDI 413 H I GI+PD+ Sbjct: 381 GHYIHGKGIKPDV 393
>CTPAL_STAES (Q8CSK8) Probable ctpA-like serine protease (EC 3.4.21.-)| Length = 491 Score = 72.0 bits (175), Expect = 2e-12 Identities = 40/88 (45%), Positives = 55/88 (62%) Frame = -2 Query: 631 VLVNEESASASEILAGALHDNGRAILVGHKTFGKGRIQSVTELDDGSALFITVAKYLSPA 452 +LVNE SASASE+ GA+ D +A + G KTFGKG +Q+ E DGS + T K+L+P Sbjct: 316 ILVNEGSASASEVFTGAMKDYHKAKVYGSKTFGKGIVQTTREFSDGSLIKYTEMKWLTPD 375 Query: 451 LHEIDHIGIQPDIQCTADALSLPRAPSL 368 H I GI+PD+ ++S P+ SL Sbjct: 376 GHYIHGKGIRPDV-----SISTPKYQSL 398
>CTPAL_STAS1 (Q49XN1) Probable ctpA-like serine protease (EC 3.4.21.-)| Length = 491 Score = 70.5 bits (171), Expect = 5e-12 Identities = 36/72 (50%), Positives = 47/72 (65%) Frame = -2 Query: 631 VLVNEESASASEILAGALHDNGRAILVGHKTFGKGRIQSVTELDDGSALFITVAKYLSPA 452 +LVN+ SASASE+ GA+ D +A + G KTFGKG +Q+ E +DGS L T K+L+P Sbjct: 316 ILVNKGSASASEVFTGAMKDYNKAKVYGSKTFGKGIVQTTREFEDGSLLKFTNMKWLTPK 375 Query: 451 LHEIDHIGIQPD 416 H I GI PD Sbjct: 376 SHYIHGKGITPD 387
>PRC_ECOLI (P23865) Tail-specific protease precursor (EC 3.4.21.102) (Protease| Re) (PRC protein) (C-terminal-processing peptidase) Length = 682 Score = 57.8 bits (138), Expect = 3e-08 Identities = 30/54 (55%), Positives = 36/54 (66%) Frame = -2 Query: 661 GQSLTHDPLVVLVNEESASASEILAGALHDNGRAILVGHKTFGKGRIQSVTELD 500 GQ PLVVLV+ SASASEI A A+ D GRA++VG TFGKG +Q L+ Sbjct: 434 GQVFYKGPLVVLVDRFSASASEIFAAAMQDYGRALVVGEPTFGKGTVQQYRSLN 487
>PRC_SALTY (P43669) Tail-specific protease precursor (EC 3.4.21.102) (Protease| Re) (PRC protein) (C-terminal-processing peptidase) Length = 682 Score = 56.2 bits (134), Expect = 9e-08 Identities = 28/47 (59%), Positives = 34/47 (72%) Frame = -2 Query: 640 PLVVLVNEESASASEILAGALHDNGRAILVGHKTFGKGRIQSVTELD 500 PLVVLV+ SASASEI A A+ D GRA++VG TFGKG +Q L+ Sbjct: 441 PLVVLVDRFSASASEIFAAAMQDYGRALIVGEPTFGKGTVQQYRSLN 487
>PRC_HAEIN (P45306) Tail-specific protease precursor (EC 3.4.21.102) (Protease| Re) (C-terminal-processing peptidase) Length = 695 Score = 48.5 bits (114), Expect = 2e-05 Identities = 23/46 (50%), Positives = 30/46 (65%) Frame = -2 Query: 637 LVVLVNEESASASEILAGALHDNGRAILVGHKTFGKGRIQSVTELD 500 L V++N SASASEI A A+ D R I++G TFGKG +Q L+ Sbjct: 449 LFVMINRYSASASEIFAAAMQDYRRGIIIGQNTFGKGTVQQSRSLN 494
>Y858_CHLTR (O84866) Protein CT_858| Length = 601 Score = 38.5 bits (88), Expect = 0.019 Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 4/80 (5%) Frame = -2 Query: 640 PLVVLVNEESASASEILAGALHDNGRAILVGHKTFGKGRIQSVTELDDGSALFITVAKYL 461 P+ VL+NE+ S ++ L DN RA++VG +T G G + + + + T + Sbjct: 480 PICVLINEQDFSCADFFPVVLKDNDRALIVGTRTAGAGGFVFNVQFPNRTGI-KTCSLTG 538 Query: 460 SPALHE----IDHIGIQPDI 413 S A+ E I++IG++P I Sbjct: 539 SLAVREHGAFIENIGVEPHI 558
>Y1016_CHLPN (Q9Z6P3) Protein CPn_1016/CP0837/CPj1016/CpB1054| Length = 619 Score = 36.6 bits (83), Expect = 0.073 Identities = 16/38 (42%), Positives = 23/38 (60%) Frame = -2 Query: 640 PLVVLVNEESASASEILAGALHDNGRAILVGHKTFGKG 527 PL +L++E+ S ++ L DNGRA L+G T G G Sbjct: 481 PLFMLIDEDDFSCGDLAPAILKDNGRATLIGKPTAGAG 518
>TRI1_STRCO (Q9RDE2) Tricorn protease homolog 1 (EC 3.4.21.-)| Length = 1067 Score = 32.7 bits (73), Expect = 1.1 Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 4/129 (3%) Frame = -2 Query: 658 QSLTHDPLVVLVNEESASASEILAGALHDNGRAILVGHKTFGKG-RIQSVTELDDGSALF 482 Q P+V + NE S S +I+ A+ G +VG +T+G I S L DG+ Sbjct: 944 QDAPRGPVVAVANEFSGSDGDIVNAAIKALGIGPVVGVRTWGGVIGIDSRYRLVDGT--L 1001 Query: 481 ITVAKY---LSPALHEIDHIGIQPDIQCTADALSLPRAPSLTESNEAASLEMDSCIMVAE 311 IT KY L +++ G+ PD++ +P+ P + ++D I +A Sbjct: 1002 ITQPKYAFWLEGYGWGVENHGVDPDVE-------VPQRPQ--DHAAGRDPQLDEAIALAL 1052 Query: 310 QALEIQQSK 284 ALE +K Sbjct: 1053 AALEETPAK 1061
>IRBP_BOVIN (P12661) Interphotoreceptor retinoid-binding protein precursor (IRBP)| (Interstitial retinol-binding protein) (7S protein) Length = 1286 Score = 31.2 bits (69), Expect = 3.1 Identities = 24/95 (25%), Positives = 48/95 (50%), Gaps = 3/95 (3%) Frame = -2 Query: 637 LVVLVNEESASASEILAGALHDNGRAILVGHKTFGKGRIQSVTELDDGSALFITVAKYLS 458 +V+L + +A A+E + GRA+++G T G + +DD + L++T+ S Sbjct: 1137 MVILTSTLTAGAAEEFTYIMKRLGRALVIGEVTSGGCQPPQTYHVDD-TDLYLTIPTARS 1195 Query: 457 PALHE---IDHIGIQPDIQCTADALSLPRAPSLTE 362 + + +G+ PD+ A+A +L RA + + Sbjct: 1196 VGAADGSSWEGVGVVPDVAVPAEA-ALTRAQEMLQ 1229
>PALY_RHOTO (P11544) Phenylalanine ammonia-lyase (EC 4.3.1.5)| Length = 716 Score = 30.4 bits (67), Expect = 5.2 Identities = 36/148 (24%), Positives = 60/148 (40%), Gaps = 25/148 (16%) Frame = -2 Query: 661 GQSLTHDPLVVLVNEESASASEILAGALHDNGRAILVGHKTFGKGRIQSVTEL------- 503 GQS T +PL+ + N+ S A A+ + +G GK +TE+ Sbjct: 391 GQSTTDNPLIDVENKTSHHGGNFQAAAVANTMEKTRLGLAQIGKLNFTQLTEMLNAGMNR 450 Query: 502 --------DDGS------ALFITVAKYLSPALHEIDHI--GIQPDIQC--TADALSLPRA 377 +D S L I A Y S H + + +QP ++L+L A Sbjct: 451 GLPSCLAAEDPSLSYHCKGLDIAAAAYTSELGHLANPVTTHVQPAEMANQAVNSLALISA 510 Query: 376 PSLTESNEAASLEMDSCIMVAEQALEIQ 293 TESN+ SL + + + QA++++ Sbjct: 511 RRTTESNDVLSLLLATHLYCVLQAIDLR 538
>HTXB_PSEST (O69061) Probable phosphite transport system binding protein htxB| precursor Length = 298 Score = 30.0 bits (66), Expect = 6.9 Identities = 28/99 (28%), Positives = 39/99 (39%), Gaps = 3/99 (3%) Frame = +3 Query: 264 TIYEAEPFDC*ISNACSATIMHESISRLAASLLSVSEGALGKDSASAVHCMSGWIPIWSI 443 TI E EP +++ AT S AA ++++ G H GW+ W Sbjct: 57 TIKEFEPIFKYLADQLGATYEIVSPESWAAISVAMTNG----------HVDVGWLGPWGY 106 Query: 444 SCS---AGERYFATVMNRAEPSSSSVTLCILPLPKVLWP 551 S AG ATV R EP ++ + LP WP Sbjct: 107 VLSNKKAGTEVLATVKYRGEPFYKALIVGRADLPIKKWP 145
>HISX_METTH (O26327) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)| Length = 426 Score = 29.6 bits (65), Expect = 9.0 Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 3/120 (2%) Frame = -2 Query: 640 PLVVLVNEESASASEILAGALHDNGRAILVGHKTFGKGRIQSVTELDDGSALFITVAKYL 461 P VLV + A ASEI + G A V +G I+ V ++ +F+T AK L Sbjct: 165 PDAVLVAADMAGASEI-----YRVGGAQAVAAMAYGTETIRPVDKIVGPGNIFVTAAKKL 219 Query: 460 SPALHEIDHIGIQPDIQCTADALSLPRAPSLTESNEAASLEMDSCIMVAEQ---ALEIQQ 290 +ID ++ AD + P +L +A + ++V + ALE+++ Sbjct: 220 VYGEVDIDFPAGPSEVLIIADETASPEYIALEILAQAEHDPQAASVLVTDSRDLALEVKE 279
>1A110_ARATH (Q9LQ10) Probable aminotransferase ACS10 (EC 2.6.1.-)| Length = 557 Score = 29.6 bits (65), Expect = 9.0 Identities = 15/35 (42%), Positives = 23/35 (65%) Frame = -2 Query: 655 SLTHDPLVVLVNEESASASEILAGALHDNGRAILV 551 S+T DP +++ ++SA EIL+ L D+G A LV Sbjct: 230 SVTFDPSQLVLTSGASSAIEILSFCLADSGNAFLV 264 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 95,757,956 Number of Sequences: 219361 Number of extensions: 1929886 Number of successful extensions: 5208 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 5067 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5206 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6769072002 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
