ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal9p09 |
|---|---|
| Clone Library Name | barley_pub |
>PNO_CRYPV (Q968X7) Pyruvate dehydrogenase [NADP+] (EC 1.2.1.51) (Pyruvate:NADP+| oxidoreductase) (CpPNO) Length = 1934 Score = 32.3 bits (72), Expect = 1.2 Identities = 17/38 (44%), Positives = 21/38 (55%) Frame = -1 Query: 368 SNFRKGSTVNATFYSACPRNDLLTEGTFALVEKLNGNN 255 S K +T T +C RND+L E T L EKL+ NN Sbjct: 1452 SEIPKATTFKVTILDSC-RNDILNESTGTLCEKLDENN 1488
>BCSC_PSEFL (P58937) Cellulose synthase operon protein C precursor| Length = 1279 Score = 32.0 bits (71), Expect = 1.6 Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 1/76 (1%) Frame = -1 Query: 476 PPDMLEKQIGLLP-GVMYDSTPRGVHFGDVSSDVAANSNFRKGSTVNATFYSACPRNDLL 300 P L+ +G+ P G +Y++ GV VS ANSNFR G+ + S P D + Sbjct: 1001 PDQGLKADVGVSPLGFLYNTLVGGV---SVSRPFEANSNFRYGANI-----SRRPVTDSV 1052 Query: 299 TEGTFALVEKLNGNNW 252 T +FA E GN W Sbjct: 1053 T--SFAGSEDGAGNKW 1066
>RECF_LACSS (Q38ZS1) DNA replication and repair protein recF| Length = 375 Score = 30.8 bits (68), Expect = 3.6 Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 11/82 (13%) Frame = -1 Query: 635 YSQYVTTFEEYQIQRYEGASTLYGPH-----------TLSAYIQEFQKLATAMIENKEVP 489 Y Q+ T +E+ QI+ E +TL GPH + A+ + Q+ TA+ Sbjct: 242 YQQFQTLYEKQQIREVEQGTTLIGPHRDDVQFLVNDKDVQAFGSQGQQRTTAL------S 295 Query: 488 TNIQPPDMLEKQIGLLPGVMYD 423 + D+++ Q G P ++ D Sbjct: 296 VKLAEIDLMKAQTGEYPILLLD 317
>OLIG3_MOUSE (Q6PFG8) Oligodendrocyte transcription factor 3 (Oligo3)| (Oligodendrocyte-specific bHLH transcription factor 3) (Basic helix-loop-helix domain-containing class B protein 7) Length = 273 Score = 30.0 bits (66), Expect = 6.2 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = +2 Query: 230 HHHHRQESSCYHLASQQVQRCPQLEGHSLDR 322 HHHH QES ++S Q ++ G SL R Sbjct: 29 HHHHHQESRLNSVSSTQGDMVQKMPGESLSR 59
>ARAA_ECOLI (P08202) L-arabinose isomerase (EC 5.3.1.4)| Length = 500 Score = 30.0 bits (66), Expect = 6.2 Identities = 13/48 (27%), Positives = 24/48 (50%) Frame = -1 Query: 623 VTTFEEYQIQRYEGASTLYGPHTLSAYIQEFQKLATAMIENKEVPTNI 480 +T F+ Y++ G+ LYGP TL Q + + A+ ++P + Sbjct: 1 MTIFDNYEVWFVIGSQHLYGPETLRQVTQHAEHVVNALNTEAKLPCKL 48
>ARAA_ECOL6 (Q8FL89) L-arabinose isomerase (EC 5.3.1.4)| Length = 500 Score = 30.0 bits (66), Expect = 6.2 Identities = 13/48 (27%), Positives = 24/48 (50%) Frame = -1 Query: 623 VTTFEEYQIQRYEGASTLYGPHTLSAYIQEFQKLATAMIENKEVPTNI 480 +T F+ Y++ G+ LYGP TL Q + + A+ ++P + Sbjct: 1 MTIFDNYEVWFVIGSQHLYGPETLRQVTQHAEHVVNALNTEAKLPCKL 48
>GLGC_BACLD (Q65FS5) Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27)| (ADP-glucose synthase) (ADP-glucose pyrophosphorylase) (ADPGlc PPase) Length = 379 Score = 30.0 bits (66), Expect = 6.2 Identities = 12/57 (21%), Positives = 31/57 (54%) Frame = -1 Query: 632 SQYVTTFEEYQIQRYEGASTLYGPHTLSAYIQEFQKLATAMIENKEVPTNIQPPDML 462 + Y+ E + + R +G ++ P+ ++ ++ ++ A+A+ EN+ +QP +L Sbjct: 66 NSYIGIGEPWDLDRNDGGVSILSPYAEASEVKWYKGTASAIYENRHFLKELQPEHVL 122
>POTA_STAAW (Q7A169) Spermidine/putrescine import ATP-binding protein potA (EC| 3.6.3.31) Length = 364 Score = 29.6 bits (65), Expect = 8.0 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 2/56 (3%) Frame = -1 Query: 560 HTLSAYIQEFQKLATAMIENKEVPTNIQPPD--MLEKQIGLLPGVMYDSTPRGVHF 399 + ++ Y Q+F+ + + ENK+V I+P D +++ + GL + RGVH+ Sbjct: 249 YVVNIYGQDFECVDMGIPENKKVEVVIRPEDISLIKAEEGLFKATVDSMLFRGVHY 304
>POTA_STAAS (Q6GAB5) Spermidine/putrescine import ATP-binding protein potA (EC| 3.6.3.31) Length = 364 Score = 29.6 bits (65), Expect = 8.0 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 2/56 (3%) Frame = -1 Query: 560 HTLSAYIQEFQKLATAMIENKEVPTNIQPPD--MLEKQIGLLPGVMYDSTPRGVHF 399 + ++ Y Q+F+ + + ENK+V I+P D +++ + GL + RGVH+ Sbjct: 249 YVVNIYGQDFECVDMGIPENKKVEVVIRPEDISLIKAEEGLFKATVDSMLFRGVHY 304
>POTA_STAAR (Q6GHY6) Spermidine/putrescine import ATP-binding protein potA (EC| 3.6.3.31) Length = 364 Score = 29.6 bits (65), Expect = 8.0 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 2/56 (3%) Frame = -1 Query: 560 HTLSAYIQEFQKLATAMIENKEVPTNIQPPD--MLEKQIGLLPGVMYDSTPRGVHF 399 + ++ Y Q+F+ + + ENK+V I+P D +++ + GL + RGVH+ Sbjct: 249 YVVNIYGQDFECVDMGIPENKKVEVVIRPEDISLIKAEEGLFKATVDSMLFRGVHY 304
>POTA_STAAN (Q7A679) Spermidine/putrescine import ATP-binding protein potA (EC| 3.6.3.31) Length = 364 Score = 29.6 bits (65), Expect = 8.0 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 2/56 (3%) Frame = -1 Query: 560 HTLSAYIQEFQKLATAMIENKEVPTNIQPPD--MLEKQIGLLPGVMYDSTPRGVHF 399 + ++ Y Q+F+ + + ENK+V I+P D +++ + GL + RGVH+ Sbjct: 249 YVVNIYGQDFECVDMGIPENKKVEVVIRPEDISLIKAEEGLFKATVDSMLFRGVHY 304
>POTA_STAAM (Q99V03) Spermidine/putrescine import ATP-binding protein potA (EC| 3.6.3.31) Length = 364 Score = 29.6 bits (65), Expect = 8.0 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 2/56 (3%) Frame = -1 Query: 560 HTLSAYIQEFQKLATAMIENKEVPTNIQPPD--MLEKQIGLLPGVMYDSTPRGVHF 399 + ++ Y Q+F+ + + ENK+V I+P D +++ + GL + RGVH+ Sbjct: 249 YVVNIYGQDFECVDMGIPENKKVEVVIRPEDISLIKAEEGLFKATVDSMLFRGVHY 304
>POTA_STAAC (Q5HGY5) Spermidine/putrescine import ATP-binding protein potA (EC| 3.6.3.31) Length = 364 Score = 29.6 bits (65), Expect = 8.0 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 2/56 (3%) Frame = -1 Query: 560 HTLSAYIQEFQKLATAMIENKEVPTNIQPPD--MLEKQIGLLPGVMYDSTPRGVHF 399 + ++ Y Q+F+ + + ENK+V I+P D +++ + GL + RGVH+ Sbjct: 249 YVVNIYGQDFECVDMGIPENKKVEVVIRPEDISLIKAEEGLFKATVDSMLFRGVHY 304
>ARAA_ECO57 (P58538) L-arabinose isomerase (EC 5.3.1.4)| Length = 500 Score = 29.6 bits (65), Expect = 8.0 Identities = 13/48 (27%), Positives = 24/48 (50%) Frame = -1 Query: 623 VTTFEEYQIQRYEGASTLYGPHTLSAYIQEFQKLATAMIENKEVPTNI 480 +T F+ Y++ G+ LYGP TL Q + + A+ ++P + Sbjct: 1 MTIFDNYEVWFVIGSQHLYGPETLRQVTQHAEHVVKALNTEAKLPCKL 48 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 98,332,280 Number of Sequences: 219361 Number of extensions: 2125952 Number of successful extensions: 5876 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 5568 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5844 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6086476506 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
