ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf99m13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1P13521:SCG2_HUMAN Secretogranin-2 precursor - Homo sapiens (Human) 33 0.97
2P53623:HSP72_PICAN Heat shock protein 70 2 - Pichia angusta (Yea... 32 2.8
3Q60301:Y3402_METJA Uncharacterized adenine-specific methylase MJ... 31 3.7
4P49107:PSAN_ARATH Photosystem I reaction center subunit N, chlor... 31 4.8
5Q8TDU6:GPBAR_HUMAN G-protein coupled bile acid receptor 1 - Homo... 31 4.8
6O65107:PSAN_MAIZE Photosystem I reaction center subunit N, chlor... 30 6.3

>P13521:SCG2_HUMAN Secretogranin-2 precursor - Homo sapiens (Human)|
          Length = 617
 Score = 33.1 bits (74), Expect = 0.97
 Identities = 19/59 (32%), Positives = 36/59 (61%)
 Frame = +2

Query: 242 QDYVKRSKENKEKNDKERLDDFYKRNYKDYFGFMEGSVREKPAEELTESEKGILAWLDK 418
           Q+ V+ SKEN EKN  E+++D  KR+     G  E  +R++  ++L++    ++A+L +
Sbjct: 262 QEEVRDSKENIEKN--EQINDEMKRS--GQLGIQEEDLRKESKDQLSDDVSKVIAYLKR 316



to top

>P53623:HSP72_PICAN Heat shock protein 70 2 - Pichia angusta (Yeast) (Hansenula|
           polymorpha)
          Length = 643

 Score = 31.6 bits (70), Expect = 2.8
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
 Frame = +2

Query: 239 LQDYVKRSKENKEKNDKERLDDFYKRNYKDYFGFMEGSVREKPAEELTESEK-------- 394
           ++  V  +++ KE+++KE      K   + Y   ++ +  EK  EE  E+ K        
Sbjct: 513 IERMVSEAEKYKEEDEKEAKRIAAKNGLESYAYSLKQTTSEKQFEEKVEASKREAFTKAC 572

Query: 395 -GILAWLDKNK*LASVEHD 448
              +AWLD+N+   + E+D
Sbjct: 573 DDTIAWLDENQTATAEEYD 591



to top

>Q60301:Y3402_METJA Uncharacterized adenine-specific methylase MJECS02 - Methanococcus|
           jannaschii
          Length = 1181

 Score = 31.2 bits (69), Expect = 3.7
 Identities = 15/56 (26%), Positives = 31/56 (55%)
 Frame = +2

Query: 230 KALLQDYVKRSKENKEKNDKERLDDFYKRNYKDYFGFMEGSVREKPAEELTESEKG 397
           K  +++Y++ + +N +   +E  ++FYK   K  FGF +    +K  +  +E +KG
Sbjct: 211 KEYIEEYIEVATKNIKHKKEEITNEFYKEFVKLVFGFEDVKDVKKKDKSSSEKDKG 266



to top

>P49107:PSAN_ARATH Photosystem I reaction center subunit N, chloroplast precursor -|
           Arabidopsis thaliana (Mouse-ear cress)
          Length = 171

 Score = 30.8 bits (68), Expect = 4.8
 Identities = 12/21 (57%), Positives = 18/21 (85%)
 Frame = +2

Query: 236 LLQDYVKRSKENKEKNDKERL 298
           ++ +Y++RSK NKE NDK+RL
Sbjct: 88  VIDEYLERSKTNKELNDKKRL 108



to top

>Q8TDU6:GPBAR_HUMAN G-protein coupled bile acid receptor 1 - Homo sapiens (Human)|
          Length = 330

 Score = 30.8 bits (68), Expect = 4.8
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = -3

Query: 151 LSQAEQRLQMICR*LMKR*SCCDRPSDCVQQLTWR 47
           L+ A ++LQ ICR  ++R  C D PS   + LTWR
Sbjct: 189 LATAHRQLQDICR--LERAVCRDEPSALARALTWR 221



to top

>O65107:PSAN_MAIZE Photosystem I reaction center subunit N, chloroplast precursor -|
           Zea mays (Maize)
          Length = 112

 Score = 30.4 bits (67), Expect = 6.3
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = +2

Query: 227 RKALLQDYVKRSKENKEKNDKERLDDF---YKRNYKDYFGFMEGSVREKPAEELTESEK 394
           +  +  +Y+++SK NKE NDK+RL      + R Y   FG  +        ++L + +K
Sbjct: 26  KATIFDEYLEKSKANKELNDKKRLATSGANFARAYTVEFGSCQFPYNFTGCQDLAKQKK 84


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 95,842,422
Number of extensions: 1729721
Number of successful extensions: 5746
Number of sequences better than 10.0: 6
Number of HSP's gapped: 5737
Number of HSP's successfully gapped: 6
Length of query: 224
Length of database: 100,686,439
Length adjustment: 109
Effective length of query: 115
Effective length of database: 70,788,284
Effective search space: 8140652660
Effective search space used: 8140652660
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top