ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baak4a09 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X14107.1|CHHVPSBD Hordeum vulgare chloroplast psbB, psbH, petB and petD Length = 5221 Score = 950 bits (479), Expect = 0.0 Identities = 489/491 (99%), Gaps = 1/491 (0%) Strand = Plus / Plus Query: 1 tatcgggtaggttgtggtatttcattgctacaagcatgggttattgtaaaataacacatg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4052 tatcgggtaggttgtggtatttcattgctacaagcatgggttattgtaaaataacacatg 4111 Query: 61 tcatttggatacttctcttcaactccgaagtatttttatacgatacaaatagttgaagtt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4112 tcatttggatacttctcttcaactccgaagtatttttatacgatacaaatagttgaagtt 4171 Query: 121 aattttacgaaagaaaaaaggcggattatgggagtgtgtgacttgaattattgatttggc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4172 aattttacgaaagaaaaaaggcggattatgggagtgtgtgacttgaattattgatttggc 4231 Query: 181 catgcagataaagaattggatctgccacattagaattcacaaccaaaggtgtctccgcat 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4232 catgcagataaagaattggatctgccacattagaattcacaaccaaaggtgtctccgcat 4291 Query: 241 ccaatcaacatgtaagtcccctacctaggaaggataggctggttcacttgaggagaatat 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4292 ccaatcaacatgtaagtcccctacctaggaaggataggctggttcacttgaggagaatat 4351 Query: 301 cttctatgatcataccgcaaccatgtcatccatgaacaggctccgtaagatcccatagag 360 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4352 tttctatgatcataccgcaaccatgtcatccatgaacaggctccgtaagatcccatagag 4411 Query: 361 tggaaatggaatcagtcatgtgacatgatccaattctctatttattacacttaccttttt 420 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 4412 tggaaatggaatcagtcatgtgacatgatccaattctctatttattacactta-cttttt 4470 Query: 421 attatagtatggaaatgcattcattttctttgcatcgattgtgatccgcaatactatcgg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4471 attatagtatggaaatgcattcattttctttgcatcgattgtgatccgcaatactatcgg 4530 Query: 481 agtaaaagaag 491 ||||||||||| Sbjct: 4531 agtaaaagaag 4541
>dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome Length = 134545 Score = 934 bits (471), Expect = 0.0 Identities = 486/491 (98%) Strand = Plus / Plus Query: 1 tatcgggtaggttgtggtatttcattgctacaagcatgggttattgtaaaataacacatg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 72548 tatcgggtaggttgtggtatttcattgctacaagcatgggttattgtaaaataacacatg 72607 Query: 61 tcatttggatacttctcttcaactccgaagtatttttatacgatacaaatagttgaagtt 120 |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct: 72608 tcatttggatacttctcttcaactccaaagtatttttatacaatacaaatagttgaagtt 72667 Query: 121 aattttacgaaagaaaaaaggcggattatgggagtgtgtgacttgaattattgatttggc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 72668 aattttacgaaagaaaaaaggcggattatgggagtgtgtgacttgaattattgatttggc 72727 Query: 181 catgcagataaagaattggatctgccacattagaattcacaaccaaaggtgtctccgcat 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 72728 catgcagataaagaattggatctgccacattagaattcacaaccaaaggtgtctccgcat 72787 Query: 241 ccaatcaacatgtaagtcccctacctaggaaggataggctggttcacttgaggagaatat 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 72788 ccaatcaacatgtaagtcccctacctaggaaggataggctggttcacttgaggagaatat 72847 Query: 301 cttctatgatcataccgcaaccatgtcatccatgaacaggctccgtaagatcccatagag 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 72848 cttctatgatcataccgcaaccatgtcatccatgaacaggctccgtaagatcccatagag 72907 Query: 361 tggaaatggaatcagtcatgtgacatgatccaattctctatttattacacttaccttttt 420 | |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 72908 tagaaatggaataagtcatgtgacatgatccagttctctatttattacacttaccttttt 72967 Query: 421 attatagtatggaaatgcattcattttctttgcatcgattgtgatccgcaatactatcgg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 72968 attatagtatggaaatgcattcattttctttgcatcgattgtgatccgcaatactatcgg 73027 Query: 481 agtaaaagaag 491 ||||||||||| Sbjct: 73028 agtaaaagaag 73038
>emb|X54751.1|CHTAPSGB Triticum aestivum chloroplast psbH, petB, petD, rpoA genes Length = 3240 Score = 894 bits (451), Expect = 0.0 Identities = 483/491 (98%), Gaps = 2/491 (0%) Strand = Plus / Plus Query: 1 tatcgggtaggttgtggtatttcattgctacaagcatgggttattgtaaaataacacatg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1611 tatcgggtaggttgtggtatttcattgctacaagcatgggttattgtaaaataacacatg 1670 Query: 61 tcatttggatacttctcttcaactccgaagtatttttatacgatacaaatagttgaagtt 120 |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct: 1671 tcatttggatacttctcttcaactccaaagtatttttatacaatacaaatagttgaagtt 1730 Query: 121 aattttacgaaagaaaaaaggcggattatgggagtgtgtgacttgaattattgatttggc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1731 aattttacgaaagaaaaaaggcggattatgggagtgtgtgacttgaattattgatttggc 1790 Query: 181 catgcagataaagaattggatctgccacattagaattcacaaccaaaggtgtctccgcat 240 ||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||| Sbjct: 1791 catgcagataaagaattggat-tgc-acagtagaattcacaaccaaaggtgtctccgcat 1848 Query: 241 ccaatcaacatgtaagtcccctacctaggaaggataggctggttcacttgaggagaatat 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1849 ccaatcaacatgtaagtcccctacctaggaaggataggctggttcacttgaggagaatat 1908 Query: 301 cttctatgatcataccgcaaccatgtcatccatgaacaggctccgtaagatcccatagag 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1909 cttctatgatcataccgcaaccatgtcatccatgaacaggctccgtaagatcccatagag 1968 Query: 361 tggaaatggaatcagtcatgtgacatgatccaattctctatttattacacttaccttttt 420 | |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 1969 tagaaatggaataagtcatgtgacatgatccagttctctatttattacacttaccttttt 2028 Query: 421 attatagtatggaaatgcattcattttctttgcatcgattgtgatccgcaatactatcgg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2029 attatagtatggaaatgcattcattttctttgcatcgattgtgatccgcaatactatcgg 2088 Query: 481 agtaaaagaag 491 ||||||||||| Sbjct: 2089 agtaaaagaag 2099
>gb|AE009947.2| Saccharum hybrid cultivar SP-80-3280 chloroplast, complete genome Length = 141182 Score = 745 bits (376), Expect = 0.0 Identities = 465/492 (94%), Gaps = 7/492 (1%) Strand = Plus / Plus Query: 1 tatcgggtaggttgtggtatttcattgctacaagcatgggttattgtaaaataacacatg 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct: 136866 tatcgggtaggttgtggtatttcattgctacaaacatgggttattgtaaaataagacatg 136925 Query: 61 tcatttggatacttctcttcaactccgaagtatttttatacgatacaaatagttgaagtt 120 |||||||||||||||||||||||| |||||||||||||||| ||||||||||||| Sbjct: 136926 tcatttggatacttctcttcaacttcgaagtatttttatac-----aaatagttgaagtg 136980 Query: 121 aattttacgaaagaaaa-aaggcggattatgggagtgtgtgacttgaattattgatttgg 179 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 136981 aattttacgaaagaaaataaggcggattatgggagtgtgtgacttgaattattgatttgg 137040 Query: 180 ccatgcagataaagaattggatctgccacattagaattcacaaccaaaggtgtctccgca 239 ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 137041 ccatgcagatagagaattggatctgccacattagaattcacgaccaaaggtgtctccgca 137100 Query: 240 tccaatcaacatgtaagtcccctacctaggaaggataggctggttcacttgaggagaata 299 ||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||| Sbjct: 137101 tccaatcaacacgtaagtcccctatctaggaaggataggctggttcactcgaggagaata 137160 Query: 300 tcttctatgatcataccgcaaccatgtcatccatgaacaggctccgtaagatcccataga 359 | ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| | Sbjct: 137161 ttttctatgatcataccccaaccatgtcatccatgaacaggctccgtaagatcctataaa 137220 Query: 360 gtggaaatggaatcagtcatgtgacatgatccaattctctatttattacacttacctttt 419 || ||||||||| |||||||||| ||||||||||||| | ||||||||||||| ||||| Sbjct: 137221 gtataaatggaataagtcatgtgatatgatccaattctatttttattacactta-ctttt 137279 Query: 420 tattatagtatggaaatgcattcattttctttgcatcgattgtgatccgcaatactatcg 479 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 137280 tattatagtatggaaatgcattcattttctttgcatcgattttgatccgcaatactatcg 137339 Query: 480 gagtaaaagaag 491 |||||||||||| Sbjct: 137340 gagtaaaagaag 137351
>dbj|AP006714.1| Saccharum officinarum chloroplast DNA, complete genome Length = 141182 Score = 745 bits (376), Expect = 0.0 Identities = 465/492 (94%), Gaps = 7/492 (1%) Strand = Plus / Plus Query: 1 tatcgggtaggttgtggtatttcattgctacaagcatgggttattgtaaaataacacatg 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct: 75240 tatcgggtaggttgtggtatttcattgctacaaacatgggttattgtaaaataagacatg 75299 Query: 61 tcatttggatacttctcttcaactccgaagtatttttatacgatacaaatagttgaagtt 120 |||||||||||||||||||||||| |||||||||||||||| ||||||||||||| Sbjct: 75300 tcatttggatacttctcttcaacttcgaagtatttttatac-----aaatagttgaagtg 75354 Query: 121 aattttacgaaagaaaa-aaggcggattatgggagtgtgtgacttgaattattgatttgg 179 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 75355 aattttacgaaagaaaataaggcggattatgggagtgtgtgacttgaattattgatttgg 75414 Query: 180 ccatgcagataaagaattggatctgccacattagaattcacaaccaaaggtgtctccgca 239 ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 75415 ccatgcagatagagaattggatctgccacattagaattcacgaccaaaggtgtctccgca 75474 Query: 240 tccaatcaacatgtaagtcccctacctaggaaggataggctggttcacttgaggagaata 299 ||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||| Sbjct: 75475 tccaatcaacacgtaagtcccctatctaggaaggataggctggttcactcgaggagaata 75534 Query: 300 tcttctatgatcataccgcaaccatgtcatccatgaacaggctccgtaagatcccataga 359 | ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| | Sbjct: 75535 ttttctatgatcataccccaaccatgtcatccatgaacaggctccgtaagatcctataaa 75594 Query: 360 gtggaaatggaatcagtcatgtgacatgatccaattctctatttattacacttacctttt 419 || ||||||||| |||||||||| ||||||||||||| | ||||||||||||| ||||| Sbjct: 75595 gtataaatggaataagtcatgtgatatgatccaattctatttttattacactta-ctttt 75653 Query: 420 tattatagtatggaaatgcattcattttctttgcatcgattgtgatccgcaatactatcg 479 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 75654 tattatagtatggaaatgcattcattttctttgcatcgattttgatccgcaatactatcg 75713 Query: 480 gagtaaaagaag 491 |||||||||||| Sbjct: 75714 gagtaaaagaag 75725
>gb|AY522330.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare chloroplast, complete genome Length = 134551 Score = 720 bits (363), Expect = 0.0 Identities = 465/496 (93%), Gaps = 6/496 (1%) Strand = Plus / Plus Query: 1 tatcgggtaggttgtggtatttcattgctacaagcatgggttattgtaaaataacacatg 60 ||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||| Sbjct: 72740 tatcgggtaggttgtggtatttcattgctacaaacatgggttattctaaaataagacatg 72799 Query: 61 tcatttggatacttctcttcaactccgaagtatttttatacga----tacaaatagttga 116 |||||| |||||||||||||||||||||| |||| | |||| | ||||||||||||| Sbjct: 72800 tcatttagatacttctcttcaactccgaactattgtgatacaaataatacaaatagttga 72859 Query: 117 agttaattttacgaaagaaaa-aaggcggattatgggagtgtgtgacttgaattattgat 175 ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| Sbjct: 72860 agttaattttacgaaagaaaagaaggcggattatgggagtgtgcgacttgaattattgat 72919 Query: 176 ttggccatgcagataaagaattggatctgccacattagaattcacaaccaaaggtgtctc 235 ||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||| Sbjct: 72920 ttggccatgcagatagagagttggatctgccacattagaattcacgaccaaaggtgtctc 72979 Query: 236 cgcatccaatcaacatgtaagtcccctacctaggaaggataggctggttcacttgaggag 295 | |||||||||||| ||||||||||| |||| |||||||||||||||||||||||||| Sbjct: 72980 catatccaatcaacacgtaagtcccctgtctagtaaggataggctggttcacttgaggag 73039 Query: 296 aatatcttctatgatcataccgcaaccatgtcatccatgaacaggctccgtaagatccca 355 ||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||| Sbjct: 73040 aatattttctatgatcatacctcaaccatgtcatccatgaagaggctccgtaagatccca 73099 Query: 356 tagagtggaaatggaatcagtcatgtgacatgatccaattctctatttattacacttacc 415 |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct: 73100 tagagtagaaatggaataagtcatgtgacatgatccaattctctatttattacactta-c 73158 Query: 416 tttttattatagtatggaaatgcattcattttctttgcatcgattgtgatccgcaatact 475 |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| Sbjct: 73159 tttttattatagtatggaaatgcattcattttctttgcatcgattgcgatctgcaatact 73218 Query: 476 atcggagtaaaagaag 491 |||||||||||||||| Sbjct: 73219 atcggagtaaaagaag 73234
>gb|AY522331.1| Oryza sativa (japonica cultivar-group) isolate PA64S chloroplast, complete genome Length = 134551 Score = 720 bits (363), Expect = 0.0 Identities = 465/496 (93%), Gaps = 6/496 (1%) Strand = Plus / Plus Query: 1 tatcgggtaggttgtggtatttcattgctacaagcatgggttattgtaaaataacacatg 60 ||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||| Sbjct: 72740 tatcgggtaggttgtggtatttcattgctacaaacatgggttattctaaaataagacatg 72799 Query: 61 tcatttggatacttctcttcaactccgaagtatttttatacga----tacaaatagttga 116 |||||| |||||||||||||||||||||| |||| | |||| | ||||||||||||| Sbjct: 72800 tcatttagatacttctcttcaactccgaactattgtgatacaaataatacaaatagttga 72859 Query: 117 agttaattttacgaaagaaaa-aaggcggattatgggagtgtgtgacttgaattattgat 175 ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| Sbjct: 72860 agttaattttacgaaagaaaagaaggcggattatgggagtgtgcgacttgaattattgat 72919 Query: 176 ttggccatgcagataaagaattggatctgccacattagaattcacaaccaaaggtgtctc 235 ||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||| Sbjct: 72920 ttggccatgcagatagagagttggatctgccacattagaattcacgaccaaaggtgtctc 72979 Query: 236 cgcatccaatcaacatgtaagtcccctacctaggaaggataggctggttcacttgaggag 295 | |||||||||||| ||||||||||| |||| |||||||||||||||||||||||||| Sbjct: 72980 catatccaatcaacacgtaagtcccctgtctagtaaggataggctggttcacttgaggag 73039 Query: 296 aatatcttctatgatcataccgcaaccatgtcatccatgaacaggctccgtaagatccca 355 ||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||| Sbjct: 73040 aatattttctatgatcatacctcaaccatgtcatccatgaagaggctccgtaagatccca 73099 Query: 356 tagagtggaaatggaatcagtcatgtgacatgatccaattctctatttattacacttacc 415 |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct: 73100 tagagtagaaatggaataagtcatgtgacatgatccaattctctatttattacactta-c 73158 Query: 416 tttttattatagtatggaaatgcattcattttctttgcatcgattgtgatccgcaatact 475 |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| Sbjct: 73159 tttttattatagtatggaaatgcattcattttctttgcatcgattgcgatctgcaatact 73218 Query: 476 atcggagtaaaagaag 491 |||||||||||||||| Sbjct: 73219 atcggagtaaaagaag 73234
>gb|AY522329.1| Oryza sativa (indica cultivar-group) isolate 93-11 chloroplast, complete genome Length = 134496 Score = 720 bits (363), Expect = 0.0 Identities = 465/496 (93%), Gaps = 6/496 (1%) Strand = Plus / Plus Query: 1 tatcgggtaggttgtggtatttcattgctacaagcatgggttattgtaaaataacacatg 60 ||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||| Sbjct: 72684 tatcgggtaggttgtggtatttcattgctacaaacatgggttattctaaaataagacatg 72743 Query: 61 tcatttggatacttctcttcaactccgaagtatttttatacga----tacaaatagttga 116 |||||| |||||||||||||||||||||| |||| | |||| | ||||||||||||| Sbjct: 72744 tcatttagatacttctcttcaactccgaactattgtgatacaaataatacaaatagttga 72803 Query: 117 agttaattttacgaaagaaaa-aaggcggattatgggagtgtgtgacttgaattattgat 175 ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| Sbjct: 72804 agttaattttacgaaagaaaagaaggcggattatgggagtgtgcgacttgaattattgat 72863 Query: 176 ttggccatgcagataaagaattggatctgccacattagaattcacaaccaaaggtgtctc 235 ||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||| Sbjct: 72864 ttggccatgcagatagagagttggatctgccacattagaattcacgaccaaaggtgtctc 72923 Query: 236 cgcatccaatcaacatgtaagtcccctacctaggaaggataggctggttcacttgaggag 295 | |||||||||||| ||||||||||| |||| |||||||||||||||||||||||||| Sbjct: 72924 catatccaatcaacacgtaagtcccctgtctagtaaggataggctggttcacttgaggag 72983 Query: 296 aatatcttctatgatcataccgcaaccatgtcatccatgaacaggctccgtaagatccca 355 ||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||| Sbjct: 72984 aatattttctatgatcatacctcaaccatgtcatccatgaagaggctccgtaagatccca 73043 Query: 356 tagagtggaaatggaatcagtcatgtgacatgatccaattctctatttattacacttacc 415 |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct: 73044 tagagtagaaatggaataagtcatgtgacatgatccaattctctatttattacactta-c 73102 Query: 416 tttttattatagtatggaaatgcattcattttctttgcatcgattgtgatccgcaatact 475 |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| Sbjct: 73103 tttttattatagtatggaaatgcattcattttctttgcatcgattgcgatctgcaatact 73162 Query: 476 atcggagtaaaagaag 491 |||||||||||||||| Sbjct: 73163 atcggagtaaaagaag 73178
>emb|BX569685.1|OSJN00291 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0061C08, complete sequence Length = 145980 Score = 720 bits (363), Expect = 0.0 Identities = 465/496 (93%), Gaps = 6/496 (1%) Strand = Plus / Minus Query: 1 tatcgggtaggttgtggtatttcattgctacaagcatgggttattgtaaaataacacatg 60 ||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||| Sbjct: 78043 tatcgggtaggttgtggtatttcattgctacaaacatgggttattctaaaataagacatg 77984 Query: 61 tcatttggatacttctcttcaactccgaagtatttttatacga----tacaaatagttga 116 |||||| |||||||||||||||||||||| |||| | |||| | ||||||||||||| Sbjct: 77983 tcatttagatacttctcttcaactccgaactattgtgatacaaataatacaaatagttga 77924 Query: 117 agttaattttacgaaagaaaa-aaggcggattatgggagtgtgtgacttgaattattgat 175 ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| Sbjct: 77923 agttaattttacgaaagaaaagaaggcggattatgggagtgtgcgacttgaattattgat 77864 Query: 176 ttggccatgcagataaagaattggatctgccacattagaattcacaaccaaaggtgtctc 235 ||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||| Sbjct: 77863 ttggccatgcagatagagagttggatctgccacattagaattcacgaccaaaggtgtctc 77804 Query: 236 cgcatccaatcaacatgtaagtcccctacctaggaaggataggctggttcacttgaggag 295 | |||||||||||| ||||||||||| |||| |||||||||||||||||||||||||| Sbjct: 77803 catatccaatcaacacgtaagtcccctgtctagtaaggataggctggttcacttgaggag 77744 Query: 296 aatatcttctatgatcataccgcaaccatgtcatccatgaacaggctccgtaagatccca 355 ||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||| Sbjct: 77743 aatattttctatgatcatacctcaaccatgtcatccatgaagaggctccgtaagatccca 77684 Query: 356 tagagtggaaatggaatcagtcatgtgacatgatccaattctctatttattacacttacc 415 |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct: 77683 tagagtagaaatggaataagtcatgtgacatgatccaattctctatttattacactta-c 77625 Query: 416 tttttattatagtatggaaatgcattcattttctttgcatcgattgtgatccgcaatact 475 |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| Sbjct: 77624 tttttattatagtatggaaatgcattcattttctttgcatcgattgcgatctgcaatact 77565 Query: 476 atcggagtaaaagaag 491 |||||||||||||||| Sbjct: 77564 atcggagtaaaagaag 77549
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 720 bits (363), Expect = 0.0 Identities = 465/496 (93%), Gaps = 6/496 (1%) Strand = Plus / Minus Query: 1 tatcgggtaggttgtggtatttcattgctacaagcatgggttattgtaaaataacacatg 60 ||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||| Sbjct: 9196970 tatcgggtaggttgtggtatttcattgctacaaacatgggttattctaaaataagacatg 9196911 Query: 61 tcatttggatacttctcttcaactccgaagtatttttatacga----tacaaatagttga 116 |||||| |||||||||||||||||||||| |||| | |||| | ||||||||||||| Sbjct: 9196910 tcatttagatacttctcttcaactccgaactattgtgatacaaataatacaaatagttga 9196851 Query: 117 agttaattttacgaaagaaaa-aaggcggattatgggagtgtgtgacttgaattattgat 175 ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| Sbjct: 9196850 agttaattttacgaaagaaaagaaggcggattatgggagtgtgcgacttgaattattgat 9196791 Query: 176 ttggccatgcagataaagaattggatctgccacattagaattcacaaccaaaggtgtctc 235 ||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||| Sbjct: 9196790 ttggccatgcagatagagagttggatctgccacattagaattcacgaccaaaggtgtctc 9196731 Query: 236 cgcatccaatcaacatgtaagtcccctacctaggaaggataggctggttcacttgaggag 295 | |||||||||||| ||||||||||| |||| |||||||||||||||||||||||||| Sbjct: 9196730 catatccaatcaacacgtaagtcccctgtctagtaaggataggctggttcacttgaggag 9196671 Query: 296 aatatcttctatgatcataccgcaaccatgtcatccatgaacaggctccgtaagatccca 355 ||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||| Sbjct: 9196670 aatattttctatgatcatacctcaaccatgtcatccatgaagaggctccgtaagatccca 9196611 Query: 356 tagagtggaaatggaatcagtcatgtgacatgatccaattctctatttattacacttacc 415 |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct: 9196610 tagagtagaaatggaataagtcatgtgacatgatccaattctctatttattacactta-c 9196552 Query: 416 tttttattatagtatggaaatgcattcattttctttgcatcgattgtgatccgcaatact 475 |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| Sbjct: 9196551 tttttattatagtatggaaatgcattcattttctttgcatcgattgcgatctgcaatact 9196492 Query: 476 atcggagtaaaagaag 491 |||||||||||||||| Sbjct: 9196491 atcggagtaaaagaag 9196476 Score = 720 bits (363), Expect = 0.0 Identities = 465/496 (93%), Gaps = 6/496 (1%) Strand = Plus / Minus Query: 1 tatcgggtaggttgtggtatttcattgctacaagcatgggttattgtaaaataacacatg 60 ||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||| Sbjct: 9120017 tatcgggtaggttgtggtatttcattgctacaaacatgggttattctaaaataagacatg 9119958 Query: 61 tcatttggatacttctcttcaactccgaagtatttttatacga----tacaaatagttga 116 |||||| |||||||||||||||||||||| |||| | |||| | ||||||||||||| Sbjct: 9119957 tcatttagatacttctcttcaactccgaactattgtgatacaaataatacaaatagttga 9119898 Query: 117 agttaattttacgaaagaaaa-aaggcggattatgggagtgtgtgacttgaattattgat 175 ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| Sbjct: 9119897 agttaattttacgaaagaaaagaaggcggattatgggagtgtgcgacttgaattattgat 9119838 Query: 176 ttggccatgcagataaagaattggatctgccacattagaattcacaaccaaaggtgtctc 235 ||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||| Sbjct: 9119837 ttggccatgcagatagagagttggatctgccacattagaattcacgaccaaaggtgtctc 9119778 Query: 236 cgcatccaatcaacatgtaagtcccctacctaggaaggataggctggttcacttgaggag 295 | |||||||||||| ||||||||||| |||| |||||||||||||||||||||||||| Sbjct: 9119777 catatccaatcaacacgtaagtcccctgtctagtaaggataggctggttcacttgaggag 9119718 Query: 296 aatatcttctatgatcataccgcaaccatgtcatccatgaacaggctccgtaagatccca 355 ||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||| Sbjct: 9119717 aatattttctatgatcatacctcaaccatgtcatccatgaagaggctccgtaagatccca 9119658 Query: 356 tagagtggaaatggaatcagtcatgtgacatgatccaattctctatttattacacttacc 415 |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct: 9119657 tagagtagaaatggaataagtcatgtgacatgatccaattctctatttattacactta-c 9119599 Query: 416 tttttattatagtatggaaatgcattcattttctttgcatcgattgtgatccgcaatact 475 |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| Sbjct: 9119598 tttttattatagtatggaaatgcattcattttctttgcatcgattgcgatctgcaatact 9119539 Query: 476 atcggagtaaaagaag 491 |||||||||||||||| Sbjct: 9119538 atcggagtaaaagaag 9119523 Score = 196 bits (99), Expect = 5e-47 Identities = 185/211 (87%), Gaps = 7/211 (3%) Strand = Plus / Minus Query: 6 ggtaggttgtggtatttcattgctacaagcatgggttattgtaaaataacacatgtcatt 65 ||||||||||||||||| ||||||| || |||||||||| |||||||| | |||||||| Sbjct: 19961688 ggtaggttgtggtattttattgctataaatatgggttattctaaaataagatatgtcatt 19961629 Query: 66 tggatacttctcttcaactccgaagtatttttatacga----tacaaatagttgaagtta 121 | |||||||||||||||||||||| |||| | |||| | ||||||||||| || ||| Sbjct: 19961628 tagatacttctcttcaactccgaactattgtgatacaaataatacaaatagttaaaatta 19961569 Query: 122 attttacgaaagaaaa-aaggcggattatgggagtgtgtgacttgaattattgatttggc 180 |||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||| Sbjct: 19961568 attttacgaaagaaaagaaggtggattatgggagtgtgcgacttgaattattgatttggc 19961509 Query: 181 catgcagataaagaat--tggatctgccaca 209 ||| |||||| ||| | ||||||||||||| Sbjct: 19961508 catacagatagagacttatggatctgccaca 19961478 Score = 85.7 bits (43), Expect = 1e-13 Identities = 68/75 (90%), Gaps = 1/75 (1%) Strand = Plus / Plus Query: 129 gaaagaaaa-aaggcggattatgggagtgtgtgacttgaattattgatttggccatgcag 187 ||||||||| ||||||||||| ||||||||| |||||||||||||||||| ||| ||||| Sbjct: 17252811 gaaagaaaataaggcggattacgggagtgtgcgacttgaattattgatttagccttgcag 17252870 Query: 188 ataaagaattggatc 202 ||| ||| ||||||| Sbjct: 17252871 atagagagttggatc 17252885 Score = 54.0 bits (27), Expect = 4e-04 Identities = 61/71 (85%), Gaps = 1/71 (1%) Strand = Plus / Minus Query: 239 atccaatcaacatgtaagtcccctacctag-gaaggataggctggttcacttgaggagaa 297 |||||||||||| ||||||||||| |||| ||||||||| | |||| |||||||||| Sbjct: 19961466 atccaatcaacacgtaagtcccctgtctagtaaaggataggttaattcaattgaggagaa 19961407 Query: 298 tatcttctatg 308 ||| ||||||| Sbjct: 19961406 tattttctatg 19961396
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 720 bits (363), Expect = 0.0 Identities = 465/496 (93%), Gaps = 6/496 (1%) Strand = Plus / Plus Query: 1 tatcgggtaggttgtggtatttcattgctacaagcatgggttattgtaaaataacacatg 60 ||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||| Sbjct: 5652131 tatcgggtaggttgtggtatttcattgctacaaacatgggttattctaaaataagacatg 5652190 Query: 61 tcatttggatacttctcttcaactccgaagtatttttatacga----tacaaatagttga 116 |||||| |||||||||||||||||||||| |||| | |||| | ||||||||||||| Sbjct: 5652191 tcatttagatacttctcttcaactccgaactattgtgatacaaataatacaaatagttga 5652250 Query: 117 agttaattttacgaaagaaaa-aaggcggattatgggagtgtgtgacttgaattattgat 175 ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| Sbjct: 5652251 agttaattttacgaaagaaaagaaggcggattatgggagtgtgcgacttgaattattgat 5652310 Query: 176 ttggccatgcagataaagaattggatctgccacattagaattcacaaccaaaggtgtctc 235 ||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||| Sbjct: 5652311 ttggccatgcagatagagagttggatctgccacattagaattcacgaccaaaggtgtctc 5652370 Query: 236 cgcatccaatcaacatgtaagtcccctacctaggaaggataggctggttcacttgaggag 295 | |||||||||||| |||||||||||| |||| |||||||||||||||||||||||||| Sbjct: 5652371 catatccaatcaacacgtaagtcccctatctagtaaggataggctggttcacttgaggag 5652430 Query: 296 aatatcttctatgatcataccgcaaccatgtcatccatgaacaggctccgtaagatccca 355 ||||| ||||||| ||||||| ||||||||||||||||||| |||||||||||||||||| Sbjct: 5652431 aatattttctatggtcatacctcaaccatgtcatccatgaagaggctccgtaagatccca 5652490 Query: 356 tagagtggaaatggaatcagtcatgtgacatgatccaattctctatttattacacttacc 415 |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct: 5652491 tagagtagaaatggaataagtcatgtgacatgatccaattctctatttattacactta-c 5652549 Query: 416 tttttattatagtatggaaatgcattcattttctttgcatcgattgtgatccgcaatact 475 |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| Sbjct: 5652550 tttttattatagtatggaaatgcattcattttctttgcatcgattgcgatctgcaatact 5652609 Query: 476 atcggagtaaaagaag 491 |||||||||||||||| Sbjct: 5652610 atcggagtaaaagaag 5652625 Score = 200 bits (101), Expect = 3e-48 Identities = 120/125 (96%), Gaps = 1/125 (0%) Strand = Plus / Minus Query: 367 tggaatcagtcatgtgacatgatccaattctctatttattacacttacctttttattata 426 |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 11288677 tggaataagtcatgtgacatgatccaattctctatttattacacttac-tttttattata 11288619 Query: 427 gtatggaaatgcattcattttctttgcatcgattgtgatccgcaatactatcggagtaaa 486 ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| Sbjct: 11288618 gtatggaaatgcattcattttctttgcatcgattgcgatatgcaatactatcggagtaaa 11288559 Query: 487 agaag 491 ||||| Sbjct: 11288558 agaag 11288554
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 720 bits (363), Expect = 0.0 Identities = 465/496 (93%), Gaps = 6/496 (1%) Strand = Plus / Minus Query: 1 tatcgggtaggttgtggtatttcattgctacaagcatgggttattgtaaaataacacatg 60 ||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||| Sbjct: 9264317 tatcgggtaggttgtggtatttcattgctacaaacatgggttattctaaaataagacatg 9264258 Query: 61 tcatttggatacttctcttcaactccgaagtatttttatacga----tacaaatagttga 116 |||||| |||||||||||||||||||||| |||| | |||| | ||||||||||||| Sbjct: 9264257 tcatttagatacttctcttcaactccgaactattgtgatacaaataatacaaatagttga 9264198 Query: 117 agttaattttacgaaagaaaa-aaggcggattatgggagtgtgtgacttgaattattgat 175 ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| Sbjct: 9264197 agttaattttacgaaagaaaagaaggcggattatgggagtgtgcgacttgaattattgat 9264138 Query: 176 ttggccatgcagataaagaattggatctgccacattagaattcacaaccaaaggtgtctc 235 ||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||| Sbjct: 9264137 ttggccatgcagatagagagttggatctgccacattagaattcacgaccaaaggtgtctc 9264078 Query: 236 cgcatccaatcaacatgtaagtcccctacctaggaaggataggctggttcacttgaggag 295 | |||||||||||| ||||||||||| |||| |||||||||||||||||||||||||| Sbjct: 9264077 catatccaatcaacacgtaagtcccctgtctagtaaggataggctggttcacttgaggag 9264018 Query: 296 aatatcttctatgatcataccgcaaccatgtcatccatgaacaggctccgtaagatccca 355 ||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||| Sbjct: 9264017 aatattttctatgatcatacctcaaccatgtcatccatgaagaggctccgtaagatccca 9263958 Query: 356 tagagtggaaatggaatcagtcatgtgacatgatccaattctctatttattacacttacc 415 |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct: 9263957 tagagtagaaatggaataagtcatgtgacatgatccaattctctatttattacactta-c 9263899 Query: 416 tttttattatagtatggaaatgcattcattttctttgcatcgattgtgatccgcaatact 475 |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| Sbjct: 9263898 tttttattatagtatggaaatgcattcattttctttgcatcgattgcgatctgcaatact 9263839 Query: 476 atcggagtaaaagaag 491 |||||||||||||||| Sbjct: 9263838 atcggagtaaaagaag 9263823
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 720 bits (363), Expect = 0.0 Identities = 465/496 (93%), Gaps = 6/496 (1%) Strand = Plus / Plus Query: 1 tatcgggtaggttgtggtatttcattgctacaagcatgggttattgtaaaataacacatg 60 ||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||| Sbjct: 33492509 tatcgggtaggttgtggtatttcattgctacaaacatgggttattctaaaataagacatg 33492568 Query: 61 tcatttggatacttctcttcaactccgaagtatttttatacga----tacaaatagttga 116 |||||| |||||||||||||||||||||| |||| | |||| | ||||||||||||| Sbjct: 33492569 tcatttagatacttctcttcaactccgaactattgtgatacaaataatacaaatagttga 33492628 Query: 117 agttaattttacgaaagaaaa-aaggcggattatgggagtgtgtgacttgaattattgat 175 ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| Sbjct: 33492629 agttaattttacgaaagaaaagaaggcggattatgggagtgtgcgacttgaattattgat 33492688 Query: 176 ttggccatgcagataaagaattggatctgccacattagaattcacaaccaaaggtgtctc 235 ||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||| Sbjct: 33492689 ttggccatgcagatagagagttggatctgccacattagaattcacgaccaaaggtgtctc 33492748 Query: 236 cgcatccaatcaacatgtaagtcccctacctaggaaggataggctggttcacttgaggag 295 | |||||||||||| ||||||||||| |||| |||||||||||||||||||||||||| Sbjct: 33492749 catatccaatcaacacgtaagtcccctgtctagtaaggataggctggttcacttgaggag 33492808 Query: 296 aatatcttctatgatcataccgcaaccatgtcatccatgaacaggctccgtaagatccca 355 ||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||| Sbjct: 33492809 aatattttctatgatcatacctcaaccatgtcatccatgaagaggctccgtaagatccca 33492868 Query: 356 tagagtggaaatggaatcagtcatgtgacatgatccaattctctatttattacacttacc 415 |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct: 33492869 tagagtagaaatggaataagtcatgtgacatgatccaattctctatttattacactta-c 33492927 Query: 416 tttttattatagtatggaaatgcattcattttctttgcatcgattgtgatccgcaatact 475 |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| Sbjct: 33492928 tttttattatagtatggaaatgcattcattttctttgcatcgattgcgatctgcaatact 33492987 Query: 476 atcggagtaaaagaag 491 |||||||||||||||| Sbjct: 33492988 atcggagtaaaagaag 33493003 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 205 ccacattagaattcacaacca 225 ||||||||||||||||||||| Sbjct: 31307405 ccacattagaattcacaacca 31307425
>dbj|AP003280.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0557A01 Length = 147201 Score = 720 bits (363), Expect = 0.0 Identities = 465/496 (93%), Gaps = 6/496 (1%) Strand = Plus / Plus Query: 1 tatcgggtaggttgtggtatttcattgctacaagcatgggttattgtaaaataacacatg 60 ||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||| Sbjct: 37706 tatcgggtaggttgtggtatttcattgctacaaacatgggttattctaaaataagacatg 37765 Query: 61 tcatttggatacttctcttcaactccgaagtatttttatacga----tacaaatagttga 116 |||||| |||||||||||||||||||||| |||| | |||| | ||||||||||||| Sbjct: 37766 tcatttagatacttctcttcaactccgaactattgtgatacaaataatacaaatagttga 37825 Query: 117 agttaattttacgaaagaaaa-aaggcggattatgggagtgtgtgacttgaattattgat 175 ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| Sbjct: 37826 agttaattttacgaaagaaaagaaggcggattatgggagtgtgcgacttgaattattgat 37885 Query: 176 ttggccatgcagataaagaattggatctgccacattagaattcacaaccaaaggtgtctc 235 ||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||| Sbjct: 37886 ttggccatgcagatagagagttggatctgccacattagaattcacgaccaaaggtgtctc 37945 Query: 236 cgcatccaatcaacatgtaagtcccctacctaggaaggataggctggttcacttgaggag 295 | |||||||||||| ||||||||||| |||| |||||||||||||||||||||||||| Sbjct: 37946 catatccaatcaacacgtaagtcccctgtctagtaaggataggctggttcacttgaggag 38005 Query: 296 aatatcttctatgatcataccgcaaccatgtcatccatgaacaggctccgtaagatccca 355 ||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||| Sbjct: 38006 aatattttctatgatcatacctcaaccatgtcatccatgaagaggctccgtaagatccca 38065 Query: 356 tagagtggaaatggaatcagtcatgtgacatgatccaattctctatttattacacttacc 415 |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct: 38066 tagagtagaaatggaataagtcatgtgacatgatccaattctctatttattacactta-c 38124 Query: 416 tttttattatagtatggaaatgcattcattttctttgcatcgattgtgatccgcaatact 475 |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| Sbjct: 38125 tttttattatagtatggaaatgcattcattttctttgcatcgattgcgatctgcaatact 38184 Query: 476 atcggagtaaaagaag 491 |||||||||||||||| Sbjct: 38185 atcggagtaaaagaag 38200
>dbj|AP005161.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0036E18 Length = 141148 Score = 720 bits (363), Expect = 0.0 Identities = 465/496 (93%), Gaps = 6/496 (1%) Strand = Plus / Minus Query: 1 tatcgggtaggttgtggtatttcattgctacaagcatgggttattgtaaaataacacatg 60 ||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||| Sbjct: 75530 tatcgggtaggttgtggtatttcattgctacaaacatgggttattctaaaataagacatg 75471 Query: 61 tcatttggatacttctcttcaactccgaagtatttttatacga----tacaaatagttga 116 |||||| |||||||||||||||||||||| |||| | |||| | ||||||||||||| Sbjct: 75470 tcatttagatacttctcttcaactccgaactattgtgatacaaataatacaaatagttga 75411 Query: 117 agttaattttacgaaagaaaa-aaggcggattatgggagtgtgtgacttgaattattgat 175 ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| Sbjct: 75410 agttaattttacgaaagaaaagaaggcggattatgggagtgtgcgacttgaattattgat 75351 Query: 176 ttggccatgcagataaagaattggatctgccacattagaattcacaaccaaaggtgtctc 235 ||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||| Sbjct: 75350 ttggccatgcagatagagagttggatctgccacattagaattcacgaccaaaggtgtctc 75291 Query: 236 cgcatccaatcaacatgtaagtcccctacctaggaaggataggctggttcacttgaggag 295 | |||||||||||| ||||||||||| |||| |||||||||||||||||||||||||| Sbjct: 75290 catatccaatcaacacgtaagtcccctgtctagtaaggataggctggttcacttgaggag 75231 Query: 296 aatatcttctatgatcataccgcaaccatgtcatccatgaacaggctccgtaagatccca 355 ||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||| Sbjct: 75230 aatattttctatgatcatacctcaaccatgtcatccatgaagaggctccgtaagatccca 75171 Query: 356 tagagtggaaatggaatcagtcatgtgacatgatccaattctctatttattacacttacc 415 |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct: 75170 tagagtagaaatggaataagtcatgtgacatgatccaattctctatttattacactta-c 75112 Query: 416 tttttattatagtatggaaatgcattcattttctttgcatcgattgtgatccgcaatact 475 |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| Sbjct: 75111 tttttattatagtatggaaatgcattcattttctttgcatcgattgcgatctgcaatact 75052 Query: 476 atcggagtaaaagaag 491 |||||||||||||||| Sbjct: 75051 atcggagtaaaagaag 75036
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 720 bits (363), Expect = 0.0 Identities = 465/496 (93%), Gaps = 6/496 (1%) Strand = Plus / Plus Query: 1 tatcgggtaggttgtggtatttcattgctacaagcatgggttattgtaaaataacacatg 60 ||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||| Sbjct: 5652124 tatcgggtaggttgtggtatttcattgctacaaacatgggttattctaaaataagacatg 5652183 Query: 61 tcatttggatacttctcttcaactccgaagtatttttatacga----tacaaatagttga 116 |||||| |||||||||||||||||||||| |||| | |||| | ||||||||||||| Sbjct: 5652184 tcatttagatacttctcttcaactccgaactattgtgatacaaataatacaaatagttga 5652243 Query: 117 agttaattttacgaaagaaaa-aaggcggattatgggagtgtgtgacttgaattattgat 175 ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| Sbjct: 5652244 agttaattttacgaaagaaaagaaggcggattatgggagtgtgcgacttgaattattgat 5652303 Query: 176 ttggccatgcagataaagaattggatctgccacattagaattcacaaccaaaggtgtctc 235 ||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||| Sbjct: 5652304 ttggccatgcagatagagagttggatctgccacattagaattcacgaccaaaggtgtctc 5652363 Query: 236 cgcatccaatcaacatgtaagtcccctacctaggaaggataggctggttcacttgaggag 295 | |||||||||||| |||||||||||| |||| |||||||||||||||||||||||||| Sbjct: 5652364 catatccaatcaacacgtaagtcccctatctagtaaggataggctggttcacttgaggag 5652423 Query: 296 aatatcttctatgatcataccgcaaccatgtcatccatgaacaggctccgtaagatccca 355 ||||| ||||||| ||||||| ||||||||||||||||||| |||||||||||||||||| Sbjct: 5652424 aatattttctatggtcatacctcaaccatgtcatccatgaagaggctccgtaagatccca 5652483 Query: 356 tagagtggaaatggaatcagtcatgtgacatgatccaattctctatttattacacttacc 415 |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct: 5652484 tagagtagaaatggaataagtcatgtgacatgatccaattctctatttattacactta-c 5652542 Query: 416 tttttattatagtatggaaatgcattcattttctttgcatcgattgtgatccgcaatact 475 |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| Sbjct: 5652543 tttttattatagtatggaaatgcattcattttctttgcatcgattgcgatctgcaatact 5652602 Query: 476 atcggagtaaaagaag 491 |||||||||||||||| Sbjct: 5652603 atcggagtaaaagaag 5652618 Score = 200 bits (101), Expect = 3e-48 Identities = 120/125 (96%), Gaps = 1/125 (0%) Strand = Plus / Minus Query: 367 tggaatcagtcatgtgacatgatccaattctctatttattacacttacctttttattata 426 |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 11288348 tggaataagtcatgtgacatgatccaattctctatttattacacttac-tttttattata 11288290 Query: 427 gtatggaaatgcattcattttctttgcatcgattgtgatccgcaatactatcggagtaaa 486 ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| Sbjct: 11288289 gtatggaaatgcattcattttctttgcatcgattgcgatatgcaatactatcggagtaaa 11288230 Query: 487 agaag 491 ||||| Sbjct: 11288229 agaag 11288225
>emb|AL954853.5|CNS08CD7 Oryza sativa chromosome 12, . BAC OSJNBb0071I17 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 159056 Score = 720 bits (363), Expect = 0.0 Identities = 465/496 (93%), Gaps = 6/496 (1%) Strand = Plus / Plus Query: 1 tatcgggtaggttgtggtatttcattgctacaagcatgggttattgtaaaataacacatg 60 ||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||| Sbjct: 6654 tatcgggtaggttgtggtatttcattgctacaaacatgggttattctaaaataagacatg 6713 Query: 61 tcatttggatacttctcttcaactccgaagtatttttatacga----tacaaatagttga 116 |||||| |||||||||||||||||||||| |||| | |||| | ||||||||||||| Sbjct: 6714 tcatttagatacttctcttcaactccgaactattgtgatacaaataatacaaatagttga 6773 Query: 117 agttaattttacgaaagaaaa-aaggcggattatgggagtgtgtgacttgaattattgat 175 ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| Sbjct: 6774 agttaattttacgaaagaaaagaaggcggattatgggagtgtgcgacttgaattattgat 6833 Query: 176 ttggccatgcagataaagaattggatctgccacattagaattcacaaccaaaggtgtctc 235 ||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||| Sbjct: 6834 ttggccatgcagatagagagttggatctgccacattagaattcacgaccaaaggtgtctc 6893 Query: 236 cgcatccaatcaacatgtaagtcccctacctaggaaggataggctggttcacttgaggag 295 | |||||||||||| |||||||||||| |||| |||||||||||||||||||||||||| Sbjct: 6894 catatccaatcaacacgtaagtcccctatctagtaaggataggctggttcacttgaggag 6953 Query: 296 aatatcttctatgatcataccgcaaccatgtcatccatgaacaggctccgtaagatccca 355 ||||| ||||||| ||||||| ||||||||||||||||||| |||||||||||||||||| Sbjct: 6954 aatattttctatggtcatacctcaaccatgtcatccatgaagaggctccgtaagatccca 7013 Query: 356 tagagtggaaatggaatcagtcatgtgacatgatccaattctctatttattacacttacc 415 |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct: 7014 tagagtagaaatggaataagtcatgtgacatgatccaattctctatttattacactta-c 7072 Query: 416 tttttattatagtatggaaatgcattcattttctttgcatcgattgtgatccgcaatact 475 |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| Sbjct: 7073 tttttattatagtatggaaatgcattcattttctttgcatcgattgcgatctgcaatact 7132 Query: 476 atcggagtaaaagaag 491 |||||||||||||||| Sbjct: 7133 atcggagtaaaagaag 7148
>emb|BX000560.1|CNS08CE6 Oryza sativa chromosome 12, . BAC OSJNBa0021D06 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 139684 Score = 720 bits (363), Expect = 0.0 Identities = 465/496 (93%), Gaps = 6/496 (1%) Strand = Plus / Minus Query: 1 tatcgggtaggttgtggtatttcattgctacaagcatgggttattgtaaaataacacatg 60 ||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||| Sbjct: 754 tatcgggtaggttgtggtatttcattgctacaaacatgggttattctaaaataagacatg 695 Query: 61 tcatttggatacttctcttcaactccgaagtatttttatacga----tacaaatagttga 116 |||||| |||||||||||||||||||||| |||| | |||| | ||||||||||||| Sbjct: 694 tcatttagatacttctcttcaactccgaactattgtgatacaaataatacaaatagttga 635 Query: 117 agttaattttacgaaagaaaa-aaggcggattatgggagtgtgtgacttgaattattgat 175 ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| Sbjct: 634 agttaattttacgaaagaaaagaaggcggattatgggagtgtgcgacttgaattattgat 575 Query: 176 ttggccatgcagataaagaattggatctgccacattagaattcacaaccaaaggtgtctc 235 ||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||| Sbjct: 574 ttggccatgcagatagagagttggatctgccacattagaattcacgaccaaaggtgtctc 515 Query: 236 cgcatccaatcaacatgtaagtcccctacctaggaaggataggctggttcacttgaggag 295 | |||||||||||| |||||||||||| |||| |||||||||||||||||||||||||| Sbjct: 514 catatccaatcaacacgtaagtcccctatctagtaaggataggctggttcacttgaggag 455 Query: 296 aatatcttctatgatcataccgcaaccatgtcatccatgaacaggctccgtaagatccca 355 ||||| ||||||| ||||||| ||||||||||||||||||| |||||||||||||||||| Sbjct: 454 aatattttctatggtcatacctcaaccatgtcatccatgaagaggctccgtaagatccca 395 Query: 356 tagagtggaaatggaatcagtcatgtgacatgatccaattctctatttattacacttacc 415 |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct: 394 tagagtagaaatggaataagtcatgtgacatgatccaattctctatttattacactta-c 336 Query: 416 tttttattatagtatggaaatgcattcattttctttgcatcgattgtgatccgcaatact 475 |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| Sbjct: 335 tttttattatagtatggaaatgcattcattttctttgcatcgattgcgatctgcaatact 276 Query: 476 atcggagtaaaagaag 491 |||||||||||||||| Sbjct: 275 atcggagtaaaagaag 260
>emb|X86563.2|ZMA86563 Zea mays complete chloroplast genome Length = 140384 Score = 716 bits (361), Expect = 0.0 Identities = 464/495 (93%), Gaps = 10/495 (2%) Strand = Plus / Plus Query: 1 tatcgggtaggttgtggtatttcattgctacaagcatgggttattgtaaaataacacatg 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct: 74583 tatcgggtaggttgtggtatttcattgctacaaacatgggttattgtaaaataagacatg 74642 Query: 61 tcatttggatacttctcttcaactccgaagtatttttatacgatacaaatagttgaagtt 120 |||||||||||||||||||||||| |||||||||||||||| ||||||||||||| Sbjct: 74643 tcatttggatacttctcttcaacttcgaagtatttttatac-----aaatagttgaagtg 74697 Query: 121 aattttacgaaagaaaa-aaggcggattatgggagtgtgtgacttgaattattgatttgg 179 ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct: 74698 aattttacgaaagaaaataaggcggattatgggagtgtgtgacttgaattattaatttgg 74757 Query: 180 ccatgcagataaagaattggatctgccacattagaattcacaaccaaaggtgtctccgca 239 ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 74758 ccatgcagatagagaattggatctgccacattagaattcacgaccaaaggtgtctccgca 74817 Query: 240 tccaatcaacatgtaagtcccctacctaggaaggataggctggttcacttgaggagaata 299 ||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||| Sbjct: 74818 tccaatcaacacgtaagtcccctatctaggaaggataggctggttcactcgaggagaata 74877 Query: 300 tcttctatgatcatacc---gcaaccatgtcatccatgaacaggctccgtaagatcccat 356 | ||||||||||||||| |||||||||||||||||||||||||||||||||||| || Sbjct: 74878 ttttctatgatcataccccaccaaccatgtcatccatgaacaggctccgtaagatcctat 74937 Query: 357 agagtggaaatggaatcagtcatgtgacatgatccaattctctatttattacacttacct 416 ||||| ||||||||| |||||||||| |||||||||||| | ||||||||||||| || Sbjct: 74938 agagtataaatggaataagtcatgtgatatgatccaattcaatttttattacactta-ct 74996 Query: 417 ttttattatagtatggaaatgcattcattttctttgcatcgattgtgatccgcaatacta 476 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 74997 ttttattatagtatggaaatgcattcattttctttgcatcgattttgatccgcaatacta 75056 Query: 477 tcggagtaaaagaag 491 ||||||||||||||| Sbjct: 75057 tcggagtaaaagaag 75071
>emb|X05422.1|CHZMPSB Maize chloroplast psbB-psbF-petB-petD gene cluster Length = 5329 Score = 716 bits (361), Expect = 0.0 Identities = 464/495 (93%), Gaps = 10/495 (2%) Strand = Plus / Plus Query: 1 tatcgggtaggttgtggtatttcattgctacaagcatgggttattgtaaaataacacatg 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct: 4240 tatcgggtaggttgtggtatttcattgctacaaacatgggttattgtaaaataagacatg 4299 Query: 61 tcatttggatacttctcttcaactccgaagtatttttatacgatacaaatagttgaagtt 120 |||||||||||||||||||||||| |||||||||||||||| ||||||||||||| Sbjct: 4300 tcatttggatacttctcttcaacttcgaagtatttttatac-----aaatagttgaagtg 4354 Query: 121 aattttacgaaagaaaa-aaggcggattatgggagtgtgtgacttgaattattgatttgg 179 ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct: 4355 aattttacgaaagaaaataaggcggattatgggagtgtgtgacttgaattattaatttgg 4414 Query: 180 ccatgcagataaagaattggatctgccacattagaattcacaaccaaaggtgtctccgca 239 ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 4415 ccatgcagatagagaattggatctgccacattagaattcacgaccaaaggtgtctccgca 4474 Query: 240 tccaatcaacatgtaagtcccctacctaggaaggataggctggttcacttgaggagaata 299 ||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||| Sbjct: 4475 tccaatcaacacgtaagtcccctatctaggaaggataggctggttcactcgaggagaata 4534 Query: 300 tcttctatgatcatacc---gcaaccatgtcatccatgaacaggctccgtaagatcccat 356 | ||||||||||||||| |||||||||||||||||||||||||||||||||||| || Sbjct: 4535 ttttctatgatcataccccaccaaccatgtcatccatgaacaggctccgtaagatcctat 4594 Query: 357 agagtggaaatggaatcagtcatgtgacatgatccaattctctatttattacacttacct 416 ||||| ||||||||| |||||||||| |||||||||||| | ||||||||||||| || Sbjct: 4595 agagtataaatggaataagtcatgtgatatgatccaattcaatttttattacactta-ct 4653 Query: 417 ttttattatagtatggaaatgcattcattttctttgcatcgattgtgatccgcaatacta 476 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 4654 ttttattatagtatggaaatgcattcattttctttgcatcgattttgatccgcaatacta 4713 Query: 477 tcggagtaaaagaag 491 ||||||||||||||| Sbjct: 4714 tcggagtaaaagaag 4728
>gb|AY928077.1| Zea mays cultivar B73 chloroplast, complete genome Length = 140454 Score = 716 bits (361), Expect = 0.0 Identities = 464/495 (93%), Gaps = 10/495 (2%) Strand = Plus / Plus Query: 1 tatcgggtaggttgtggtatttcattgctacaagcatgggttattgtaaaataacacatg 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct: 74598 tatcgggtaggttgtggtatttcattgctacaaacatgggttattgtaaaataagacatg 74657 Query: 61 tcatttggatacttctcttcaactccgaagtatttttatacgatacaaatagttgaagtt 120 |||||||||||||||||||||||| |||||||||||||||| ||||||||||||| Sbjct: 74658 tcatttggatacttctcttcaacttcgaagtatttttatac-----aaatagttgaagtg 74712 Query: 121 aattttacgaaagaaaa-aaggcggattatgggagtgtgtgacttgaattattgatttgg 179 ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct: 74713 aattttacgaaagaaaataaggcggattatgggagtgtgtgacttgaattattaatttgg 74772 Query: 180 ccatgcagataaagaattggatctgccacattagaattcacaaccaaaggtgtctccgca 239 ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 74773 ccatgcagatagagaattggatctgccacattagaattcacgaccaaaggtgtctccgca 74832 Query: 240 tccaatcaacatgtaagtcccctacctaggaaggataggctggttcacttgaggagaata 299 ||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||| Sbjct: 74833 tccaatcaacacgtaagtcccctatctaggaaggataggctggttcactcgaggagaata 74892 Query: 300 tcttctatgatcatacc---gcaaccatgtcatccatgaacaggctccgtaagatcccat 356 | ||||||||||||||| |||||||||||||||||||||||||||||||||||| || Sbjct: 74893 ttttctatgatcataccccaccaaccatgtcatccatgaacaggctccgtaagatcctat 74952 Query: 357 agagtggaaatggaatcagtcatgtgacatgatccaattctctatttattacacttacct 416 ||||| ||||||||| |||||||||| |||||||||||| | ||||||||||||| || Sbjct: 74953 agagtataaatggaataagtcatgtgatatgatccaattcaatttttattacactta-ct 75011 Query: 417 ttttattatagtatggaaatgcattcattttctttgcatcgattgtgatccgcaatacta 476 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 75012 ttttattatagtatggaaatgcattcattttctttgcatcgattttgatccgcaatacta 75071 Query: 477 tcggagtaaaagaag 491 ||||||||||||||| Sbjct: 75072 tcggagtaaaagaag 75086
>gb|AC122148.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAb0075K12, complete sequence Length = 125936 Score = 712 bits (359), Expect = 0.0 Identities = 464/496 (93%), Gaps = 6/496 (1%) Strand = Plus / Plus Query: 1 tatcgggtaggttgtggtatttcattgctacaagcatgggttattgtaaaataacacatg 60 ||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||| Sbjct: 70939 tatcgggtaggttgtggtatttcattgctacaaacatgggttattctaaaataagacatg 70998 Query: 61 tcatttggatacttctcttcaactccgaagtatttttatacga----tacaaatagttga 116 |||||| |||||||||||||||||||||| |||| | |||| | ||||||||||||| Sbjct: 70999 tcatttagatacttctcttcaactccgaactattgtgatacaaataatacaaatagttga 71058 Query: 117 agttaattttacgaaagaaaa-aaggcggattatgggagtgtgtgacttgaattattgat 175 ||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||| Sbjct: 71059 agttaattttacgaaagaaaagaaggcggattatgggagtgtgcgacttcaattattgat 71118 Query: 176 ttggccatgcagataaagaattggatctgccacattagaattcacaaccaaaggtgtctc 235 ||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||| Sbjct: 71119 ttggccatgcagatagagagttggatctgccacattagaattcacgaccaaaggtgtctc 71178 Query: 236 cgcatccaatcaacatgtaagtcccctacctaggaaggataggctggttcacttgaggag 295 | |||||||||||| ||||||||||| |||| |||||||||||||||||||||||||| Sbjct: 71179 catatccaatcaacacgtaagtcccctgtctagtaaggataggctggttcacttgaggag 71238 Query: 296 aatatcttctatgatcataccgcaaccatgtcatccatgaacaggctccgtaagatccca 355 ||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||| Sbjct: 71239 aatattttctatgatcatacctcaaccatgtcatccatgaagaggctccgtaagatccca 71298 Query: 356 tagagtggaaatggaatcagtcatgtgacatgatccaattctctatttattacacttacc 415 |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct: 71299 tagagtagaaatggaataagtcatgtgacatgatccaattctctatttattacactta-c 71357 Query: 416 tttttattatagtatggaaatgcattcattttctttgcatcgattgtgatccgcaatact 475 |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| Sbjct: 71358 tttttattatagtatggaaatgcattcattttctttgcatcgattgcgatctgcaatact 71417 Query: 476 atcggagtaaaagaag 491 |||||||||||||||| Sbjct: 71418 atcggagtaaaagaag 71433
>gb|AC099402.2| Oryza sativa chromosome 10 clone OSJNBa0022D10, complete sequence Length = 144459 Score = 712 bits (359), Expect = 0.0 Identities = 464/496 (93%), Gaps = 6/496 (1%) Strand = Plus / Plus Query: 1 tatcgggtaggttgtggtatttcattgctacaagcatgggttattgtaaaataacacatg 60 ||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||| Sbjct: 5003 tatcgggtaggttgtggtatttcattgctacaaacatgggttattctaaaataagacatg 5062 Query: 61 tcatttggatacttctcttcaactccgaagtatttttatacga----tacaaatagttga 116 |||||| |||||||||||||||||||||| |||| | |||| | ||||||||||||| Sbjct: 5063 tcatttagatacttctcttcaactccgaactattgtgatacaaataatacaaatagttga 5122 Query: 117 agttaattttacgaaagaaaa-aaggcggattatgggagtgtgtgacttgaattattgat 175 ||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||| Sbjct: 5123 agttaattttacgaaagaaaagaaggcggattatgggagtgtgcgacttcaattattgat 5182 Query: 176 ttggccatgcagataaagaattggatctgccacattagaattcacaaccaaaggtgtctc 235 ||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||| Sbjct: 5183 ttggccatgcagatagagagttggatctgccacattagaattcacgaccaaaggtgtctc 5242 Query: 236 cgcatccaatcaacatgtaagtcccctacctaggaaggataggctggttcacttgaggag 295 | |||||||||||| ||||||||||| |||| |||||||||||||||||||||||||| Sbjct: 5243 catatccaatcaacacgtaagtcccctgtctagtaaggataggctggttcacttgaggag 5302 Query: 296 aatatcttctatgatcataccgcaaccatgtcatccatgaacaggctccgtaagatccca 355 ||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||| Sbjct: 5303 aatattttctatgatcatacctcaaccatgtcatccatgaagaggctccgtaagatccca 5362 Query: 356 tagagtggaaatggaatcagtcatgtgacatgatccaattctctatttattacacttacc 415 |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct: 5363 tagagtagaaatggaataagtcatgtgacatgatccaattctctatttattacactta-c 5421 Query: 416 tttttattatagtatggaaatgcattcattttctttgcatcgattgtgatccgcaatact 475 |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| Sbjct: 5422 tttttattatagtatggaaatgcattcattttctttgcatcgattgcgatctgcaatact 5481 Query: 476 atcggagtaaaagaag 491 |||||||||||||||| Sbjct: 5482 atcggagtaaaagaag 5497
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 712 bits (359), Expect = 0.0 Identities = 464/496 (93%), Gaps = 6/496 (1%) Strand = Plus / Plus Query: 1 tatcgggtaggttgtggtatttcattgctacaagcatgggttattgtaaaataacacatg 60 ||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||| Sbjct: 10364547 tatcgggtaggttgtggtatttcattgctacaaacatgggttattctaaaataagacatg 10364606 Query: 61 tcatttggatacttctcttcaactccgaagtatttttatacga----tacaaatagttga 116 |||||| |||||||||||||||||||||| |||| | |||| | ||||||||||||| Sbjct: 10364607 tcatttagatacttctcttcaactccgaactattgtgatacaaataatacaaatagttga 10364666 Query: 117 agttaattttacgaaagaaaa-aaggcggattatgggagtgtgtgacttgaattattgat 175 ||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||| Sbjct: 10364667 agttaattttacgaaagaaaagaaggcggattatgggagtgtgcgacttcaattattgat 10364726 Query: 176 ttggccatgcagataaagaattggatctgccacattagaattcacaaccaaaggtgtctc 235 ||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||| Sbjct: 10364727 ttggccatgcagatagagagttggatctgccacattagaattcacgaccaaaggtgtctc 10364786 Query: 236 cgcatccaatcaacatgtaagtcccctacctaggaaggataggctggttcacttgaggag 295 | |||||||||||| ||||||||||| |||| |||||||||||||||||||||||||| Sbjct: 10364787 catatccaatcaacacgtaagtcccctgtctagtaaggataggctggttcacttgaggag 10364846 Query: 296 aatatcttctatgatcataccgcaaccatgtcatccatgaacaggctccgtaagatccca 355 ||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||| Sbjct: 10364847 aatattttctatgatcatacctcaaccatgtcatccatgaagaggctccgtaagatccca 10364906 Query: 356 tagagtggaaatggaatcagtcatgtgacatgatccaattctctatttattacacttacc 415 |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct: 10364907 tagagtagaaatggaataagtcatgtgacatgatccaattctctatttattacactta-c 10364965 Query: 416 tttttattatagtatggaaatgcattcattttctttgcatcgattgtgatccgcaatact 475 |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| Sbjct: 10364966 tttttattatagtatggaaatgcattcattttctttgcatcgattgcgatctgcaatact 10365025 Query: 476 atcggagtaaaagaag 491 |||||||||||||||| Sbjct: 10365026 atcggagtaaaagaag 10365041 Score = 200 bits (101), Expect = 3e-48 Identities = 143/156 (91%), Gaps = 2/156 (1%) Strand = Plus / Plus Query: 338 aggctccgtaagatcccatagagtggaaatggaatcagtcatgtgacatgatccaattct 397 ||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||| Sbjct: 9436005 aggctccgtaagatcgcatagagtataaatggaataagtcatgtgacatgatccaattct 9436064 Query: 398 ctatttattacacttacct--ttttattatagtatggaaatgcattcattttctttgcat 455 |||||||||||||||| | ||||||||| |||||||||||||||||||||||| |||| Sbjct: 9436065 ctatttattacacttaatttcttttattatggtatggaaatgcattcattttcttagcat 9436124 Query: 456 cgattgtgatccgcaatactatcggagtaaaagaag 491 |||| ||||| |||||||||||||||||||||||| Sbjct: 9436125 tgattctgatctgcaatactatcggagtaaaagaag 9436160
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 712 bits (359), Expect = 0.0 Identities = 464/496 (93%), Gaps = 6/496 (1%) Strand = Plus / Plus Query: 1 tatcgggtaggttgtggtatttcattgctacaagcatgggttattgtaaaataacacatg 60 ||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||| Sbjct: 10370586 tatcgggtaggttgtggtatttcattgctacaaacatgggttattctaaaataagacatg 10370645 Query: 61 tcatttggatacttctcttcaactccgaagtatttttatacga----tacaaatagttga 116 |||||| |||||||||||||||||||||| |||| | |||| | ||||||||||||| Sbjct: 10370646 tcatttagatacttctcttcaactccgaactattgtgatacaaataatacaaatagttga 10370705 Query: 117 agttaattttacgaaagaaaa-aaggcggattatgggagtgtgtgacttgaattattgat 175 ||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||| Sbjct: 10370706 agttaattttacgaaagaaaagaaggcggattatgggagtgtgcgacttcaattattgat 10370765 Query: 176 ttggccatgcagataaagaattggatctgccacattagaattcacaaccaaaggtgtctc 235 ||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||| Sbjct: 10370766 ttggccatgcagatagagagttggatctgccacattagaattcacgaccaaaggtgtctc 10370825 Query: 236 cgcatccaatcaacatgtaagtcccctacctaggaaggataggctggttcacttgaggag 295 | |||||||||||| ||||||||||| |||| |||||||||||||||||||||||||| Sbjct: 10370826 catatccaatcaacacgtaagtcccctgtctagtaaggataggctggttcacttgaggag 10370885 Query: 296 aatatcttctatgatcataccgcaaccatgtcatccatgaacaggctccgtaagatccca 355 ||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||| Sbjct: 10370886 aatattttctatgatcatacctcaaccatgtcatccatgaagaggctccgtaagatccca 10370945 Query: 356 tagagtggaaatggaatcagtcatgtgacatgatccaattctctatttattacacttacc 415 |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct: 10370946 tagagtagaaatggaataagtcatgtgacatgatccaattctctatttattacactta-c 10371004 Query: 416 tttttattatagtatggaaatgcattcattttctttgcatcgattgtgatccgcaatact 475 |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| Sbjct: 10371005 tttttattatagtatggaaatgcattcattttctttgcatcgattgcgatctgcaatact 10371064 Query: 476 atcggagtaaaagaag 491 |||||||||||||||| Sbjct: 10371065 atcggagtaaaagaag 10371080 Score = 200 bits (101), Expect = 3e-48 Identities = 143/156 (91%), Gaps = 2/156 (1%) Strand = Plus / Plus Query: 338 aggctccgtaagatcccatagagtggaaatggaatcagtcatgtgacatgatccaattct 397 ||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||| Sbjct: 9442044 aggctccgtaagatcgcatagagtataaatggaataagtcatgtgacatgatccaattct 9442103 Query: 398 ctatttattacacttacct--ttttattatagtatggaaatgcattcattttctttgcat 455 |||||||||||||||| | ||||||||| |||||||||||||||||||||||| |||| Sbjct: 9442104 ctatttattacacttaatttcttttattatggtatggaaatgcattcattttcttagcat 9442163 Query: 456 cgattgtgatccgcaatactatcggagtaaaagaag 491 |||| ||||| |||||||||||||||||||||||| Sbjct: 9442164 tgattctgatctgcaatactatcggagtaaaagaag 9442199
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 704 bits (355), Expect = 0.0 Identities = 463/496 (93%), Gaps = 6/496 (1%) Strand = Plus / Minus Query: 1 tatcgggtaggttgtggtatttcattgctacaagcatgggttattgtaaaataacacatg 60 ||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||| Sbjct: 23186355 tatcgggtaggttgtggtatttcattgctacaaacatgggttattctaaaataagacatg 23186296 Query: 61 tcatttggatacttctcttcaactccgaagtatttttatacga----tacaaatagttga 116 |||||| |||||||||||||||||||||| |||| | || | | ||||||||||||| Sbjct: 23186295 tcatttagatacttctcttcaactccgaactattgtgatgcaaataatacaaatagttga 23186236 Query: 117 agttaattttacgaaagaaaa-aaggcggattatgggagtgtgtgacttgaattattgat 175 ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| Sbjct: 23186235 agttaattttacgaaagaaaagaaggcggattatgggagtgtgcgacttgaattattgat 23186176 Query: 176 ttggccatgcagataaagaattggatctgccacattagaattcacaaccaaaggtgtctc 235 ||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||| Sbjct: 23186175 ttggccatgcagatagagagttggatctgccacattagaattcacgaccaaaggtgtctc 23186116 Query: 236 cgcatccaatcaacatgtaagtcccctacctaggaaggataggctggttcacttgaggag 295 | |||||||||||| ||||||||||| |||| |||||||||||||||||||||||||| Sbjct: 23186115 catatccaatcaacacgtaagtcccctgtctagtaaggataggctggttcacttgaggag 23186056 Query: 296 aatatcttctatgatcataccgcaaccatgtcatccatgaacaggctccgtaagatccca 355 ||||| ||||||||||||| | ||||||||||||||||||| |||||||||||||||||| Sbjct: 23186055 aatattttctatgatcataactcaaccatgtcatccatgaagaggctccgtaagatccca 23185996 Query: 356 tagagtggaaatggaatcagtcatgtgacatgatccaattctctatttattacacttacc 415 |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct: 23185995 tagagtagaaatggaataagtcatgtgacatgatccaattctctatttattacactta-c 23185937 Query: 416 tttttattatagtatggaaatgcattcattttctttgcatcgattgtgatccgcaatact 475 |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| Sbjct: 23185936 tttttattatagtatggaaatgcattcattttctttgcatcgattgcgatctgcaatact 23185877 Query: 476 atcggagtaaaagaag 491 |||||||||||||||| Sbjct: 23185876 atcggagtaaaagaag 23185861
>dbj|AP004236.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0417D05 Length = 165752 Score = 704 bits (355), Expect = 0.0 Identities = 463/496 (93%), Gaps = 6/496 (1%) Strand = Plus / Minus Query: 1 tatcgggtaggttgtggtatttcattgctacaagcatgggttattgtaaaataacacatg 60 ||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||| Sbjct: 137003 tatcgggtaggttgtggtatttcattgctacaaacatgggttattctaaaataagacatg 136944 Query: 61 tcatttggatacttctcttcaactccgaagtatttttatacga----tacaaatagttga 116 |||||| |||||||||||||||||||||| |||| | || | | ||||||||||||| Sbjct: 136943 tcatttagatacttctcttcaactccgaactattgtgatgcaaataatacaaatagttga 136884 Query: 117 agttaattttacgaaagaaaa-aaggcggattatgggagtgtgtgacttgaattattgat 175 ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| Sbjct: 136883 agttaattttacgaaagaaaagaaggcggattatgggagtgtgcgacttgaattattgat 136824 Query: 176 ttggccatgcagataaagaattggatctgccacattagaattcacaaccaaaggtgtctc 235 ||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||| Sbjct: 136823 ttggccatgcagatagagagttggatctgccacattagaattcacgaccaaaggtgtctc 136764 Query: 236 cgcatccaatcaacatgtaagtcccctacctaggaaggataggctggttcacttgaggag 295 | |||||||||||| ||||||||||| |||| |||||||||||||||||||||||||| Sbjct: 136763 catatccaatcaacacgtaagtcccctgtctagtaaggataggctggttcacttgaggag 136704 Query: 296 aatatcttctatgatcataccgcaaccatgtcatccatgaacaggctccgtaagatccca 355 ||||| ||||||||||||| | ||||||||||||||||||| |||||||||||||||||| Sbjct: 136703 aatattttctatgatcataactcaaccatgtcatccatgaagaggctccgtaagatccca 136644 Query: 356 tagagtggaaatggaatcagtcatgtgacatgatccaattctctatttattacacttacc 415 |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct: 136643 tagagtagaaatggaataagtcatgtgacatgatccaattctctatttattacactta-c 136585 Query: 416 tttttattatagtatggaaatgcattcattttctttgcatcgattgtgatccgcaatact 475 |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| Sbjct: 136584 tttttattatagtatggaaatgcattcattttctttgcatcgattgcgatctgcaatact 136525 Query: 476 atcggagtaaaagaag 491 |||||||||||||||| Sbjct: 136524 atcggagtaaaagaag 136509
>dbj|AP003623.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0642B07 Length = 139297 Score = 704 bits (355), Expect = 0.0 Identities = 463/496 (93%), Gaps = 6/496 (1%) Strand = Plus / Minus Query: 1 tatcgggtaggttgtggtatttcattgctacaagcatgggttattgtaaaataacacatg 60 ||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||| Sbjct: 21117 tatcgggtaggttgtggtatttcattgctacaaacatgggttattctaaaataagacatg 21058 Query: 61 tcatttggatacttctcttcaactccgaagtatttttatacga----tacaaatagttga 116 |||||| |||||||||||||||||||||| |||| | || | | ||||||||||||| Sbjct: 21057 tcatttagatacttctcttcaactccgaactattgtgatgcaaataatacaaatagttga 20998 Query: 117 agttaattttacgaaagaaaa-aaggcggattatgggagtgtgtgacttgaattattgat 175 ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| Sbjct: 20997 agttaattttacgaaagaaaagaaggcggattatgggagtgtgcgacttgaattattgat 20938 Query: 176 ttggccatgcagataaagaattggatctgccacattagaattcacaaccaaaggtgtctc 235 ||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||| Sbjct: 20937 ttggccatgcagatagagagttggatctgccacattagaattcacgaccaaaggtgtctc 20878 Query: 236 cgcatccaatcaacatgtaagtcccctacctaggaaggataggctggttcacttgaggag 295 | |||||||||||| ||||||||||| |||| |||||||||||||||||||||||||| Sbjct: 20877 catatccaatcaacacgtaagtcccctgtctagtaaggataggctggttcacttgaggag 20818 Query: 296 aatatcttctatgatcataccgcaaccatgtcatccatgaacaggctccgtaagatccca 355 ||||| ||||||||||||| | ||||||||||||||||||| |||||||||||||||||| Sbjct: 20817 aatattttctatgatcataactcaaccatgtcatccatgaagaggctccgtaagatccca 20758 Query: 356 tagagtggaaatggaatcagtcatgtgacatgatccaattctctatttattacacttacc 415 |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct: 20757 tagagtagaaatggaataagtcatgtgacatgatccaattctctatttattacactta-c 20699 Query: 416 tttttattatagtatggaaatgcattcattttctttgcatcgattgtgatccgcaatact 475 |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| Sbjct: 20698 tttttattatagtatggaaatgcattcattttctttgcatcgattgcgatctgcaatact 20639 Query: 476 atcggagtaaaagaag 491 |||||||||||||||| Sbjct: 20638 atcggagtaaaagaag 20623
>dbj|AP006728.1| Oryza nivara chloroplast DNA, complete genome Length = 134494 Score = 688 bits (347), Expect = 0.0 Identities = 461/496 (92%), Gaps = 6/496 (1%) Strand = Plus / Plus Query: 1 tatcgggtaggttgtggtatttcattgctacaagcatgggttattgtaaaataacacatg 60 ||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||| Sbjct: 72663 tatcgggtaggttgtggtatttcattgctacaaacatgggttattctaaaataagacatg 72722 Query: 61 tcatttggatacttctcttcaactccgaagtatttttatacga----tacaaatagttga 116 |||||| |||||||||||||||||||||| |||| | |||| | ||||||||||||| Sbjct: 72723 tcatttagatacttctcttcaactccgaactattgtgatacaaataatacaaatagttga 72782 Query: 117 agttaattttacgaaagaaaa-aaggcggattatgggagtgtgtgacttgaattattgat 175 ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| Sbjct: 72783 agttaattttacgaaagaaaagaaggcggattatgggagtgtgcgacttgaattattgat 72842 Query: 176 ttggccatgcagataaagaattggatctgccacattagaattcacaaccaaaggtgtctc 235 ||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||| Sbjct: 72843 ttggccatgcagatagagagttggatctgccacattagaattcacgaccaaaggtgtctc 72902 Query: 236 cgcatccaatcaacatgtaagtcccctacctaggaaggataggctggttcacttgaggag 295 | |||||||||||| ||||||||||| |||| |||||||||||||||||||||||||| Sbjct: 72903 catatccaatcaacacgtaagtcccctgtctagtaaggataggctggttcacttgaggag 72962 Query: 296 aatatcttctatgatcataccgcaaccatgtcatccatgaacaggctccgtaagatccca 355 ||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||| Sbjct: 72963 aatattttctatgatcatacctcaaccatgtcatccatgaagaggctccgtaagatccca 73022 Query: 356 tagagtggaaatggaatcagtcatgtgacatgatccaattctctatttattacacttacc 415 |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct: 73023 tagagtagaaatggaataagtcatgtgacatgatccaattctctatttattacactta-c 73081 Query: 416 tttttattatagtatggaaatgcattcattttctttgcatcgattgtgatccgcaatact 475 ||||||||||| ||||||||||||||||| ||||||||||||| | |||| |||||||| Sbjct: 73082 tttttattatattatggaaatgcattcatgatctttgcatcgatcgcgatctgcaatact 73141 Query: 476 atcggagtaaaagaag 491 |||||||||||||||| Sbjct: 73142 atcggagtaaaagaag 73157
>emb|X15901.1|CHOSXX Oryza sativa (japonica cultivar-group) chloroplast genome Length = 134525 Score = 642 bits (324), Expect = 0.0 Identities = 461/497 (92%), Gaps = 11/497 (2%) Strand = Plus / Plus Query: 1 tatcgggtaggttgtggtatttcattgctacaagcatgggttattgtaaaataacacatg 60 ||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||| Sbjct: 72730 tatcgggtaggttgtggtatttcattgctacaaacatgggttattctaaaataagacatg 72789 Query: 61 tcatttggatacttctcttcaactccgaagtatttttatacga----tacaaatag-ttg 115 |||||| |||||||||||||||||||||| |||| | |||| | ||||||||| ||| Sbjct: 72790 tcatttagatacttctcttcaactccgaactattgtgatacaaataatacaaatagattg 72849 Query: 116 aagttaattttacgaaagaaaa-aaggcggattatgggagtgtgtgacttgaattattga 174 |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| Sbjct: 72850 aagttaattttacgaaagaaaagaaggcggattatgggagtgtgcgacttgaattattga 72909 Query: 175 tttggccatgcagataaagaattggatctgccacattagaattcacaaccaaaggtgtct 234 || ||||||||||||| ||| ||||||||||||||||||||||||| ||||||| ||||| Sbjct: 72910 tt-ggccatgcagatagagagttggatctgccacattagaattcacgaccaaag-tgtct 72967 Query: 235 ccgcatccaatcaacatgtaagtcccctacctaggaaggataggctggttcacttgagga 294 || |||||||||||| ||||||||||| |||| ||||||||||||||||||||||| | Sbjct: 72968 ccatatccaatcaacacgtaagtcccctgtctagtaaggataggctggttcacttgag-a 73026 Query: 295 gaatatcttctatgatcataccgcaaccatgtcatccatgaacaggctccgtaagatccc 354 |||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||| Sbjct: 73027 gaatattttctatgatcatacctcaaccatgtcatccatgaagaggctccgtaagatccc 73086 Query: 355 atagagtggaaatggaatcagtcatgtgacatgatccaattctctatttattacacttac 414 ||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 73087 atagagtagaaatg-aataagtcatgtgacatgatccaattctctatttattacacttac 73145 Query: 415 ctttttattatagtatggaaatgcattcattttctttgcatcgattgtgatccgcaatac 474 |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| Sbjct: 73146 -tttttattatagtatggaaatgcattcattttctttgcatcgattgcgatctgcaatac 73204 Query: 475 tatcggagtaaaagaag 491 ||||||||||||||||| Sbjct: 73205 tatcggagtaaaagaag 73221
>gb|S67283.2|S67282S2 Zea mays psbB operon operon, partial sequence; chloroplast Length = 915 Score = 242 bits (122), Expect = 9e-61 Identities = 156/166 (93%), Gaps = 6/166 (3%) Strand = Plus / Plus Query: 1 tatcgggtaggttgtggtatttcattgctacaagcatgggttattgtaaaataacacatg 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct: 755 tatcgggtaggttgtggtatttcattgctacaaacatgggttattgtaaaataagacatg 814 Query: 61 tcatttggatacttctcttcaactccgaagtatttttatacgatacaaatagttgaagtt 120 |||||||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct: 815 tcatttggatacttctcttcaacttcgaagtattttt-----atacaaatagttgaagtg 869 Query: 121 aattttacgaaagaaaa-aaggcggattatgggagtgtgtgacttg 165 ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 870 aattttacgaaagaaaataaggcggattatgggagtgtgtgacttg 915
>gb|AC090483.3|AC090483 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0050M22, from chromosome 10, complete sequence Length = 145417 Score = 200 bits (101), Expect = 3e-48 Identities = 143/156 (91%), Gaps = 2/156 (1%) Strand = Plus / Plus Query: 338 aggctccgtaagatcccatagagtggaaatggaatcagtcatgtgacatgatccaattct 397 ||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||| Sbjct: 69489 aggctccgtaagatcgcatagagtataaatggaataagtcatgtgacatgatccaattct 69548 Query: 398 ctatttattacacttacct--ttttattatagtatggaaatgcattcattttctttgcat 455 |||||||||||||||| | ||||||||| |||||||||||||||||||||||| |||| Sbjct: 69549 ctatttattacacttaatttcttttattatggtatggaaatgcattcattttcttagcat 69608 Query: 456 cgattgtgatccgcaatactatcggagtaaaagaag 491 |||| ||||| |||||||||||||||||||||||| Sbjct: 69609 tgattctgatctgcaatactatcggagtaaaagaag 69644
>emb|BX119951.3|CNS09S4U Oryza sativa chromosome 12, . BAC OJ1523_A01 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 127267 Score = 200 bits (101), Expect = 3e-48 Identities = 120/125 (96%), Gaps = 1/125 (0%) Strand = Plus / Plus Query: 367 tggaatcagtcatgtgacatgatccaattctctatttattacacttacctttttattata 426 |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 83377 tggaataagtcatgtgacatgatccaattctctatttattacacttac-tttttattata 83435 Query: 427 gtatggaaatgcattcattttctttgcatcgattgtgatccgcaatactatcggagtaaa 486 ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| Sbjct: 83436 gtatggaaatgcattcattttctttgcatcgattgcgatatgcaatactatcggagtaaa 83495 Query: 487 agaag 491 ||||| Sbjct: 83496 agaag 83500
>gb|AY590837.1| Nypa fruticans petB-petD intergenic spacer, partial sequence; and PetD (petD) gene, intron and partial cds; chloroplast Length = 963 Score = 198 bits (100), Expect = 1e-47 Identities = 269/322 (83%), Gaps = 11/322 (3%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatttggccatgcagataaagaattggatc 202 ||||||||||||||||||||||||| |||| ||| ||||||||||||| | ||| ||| Sbjct: 210 ggattatgggagtgtgtgacttgaactattaattgggccatgcagatatatgattttatc 269 Query: 203 tgccacattagaattcacaaccaaaggtgtctccgcatccaatcaacatgtaagtcccc- 261 |||||||| ||||||| ||||||| |||||||||||||||| || || |||||||||| Sbjct: 270 cgccacattggaattcataaccaaatgtgtctccgcatccaaccaccacgtaagtccccc 329 Query: 262 tacctagga-aggataggctggttcacttgaggagaatatcttctatgatcataccgcaa 320 || ||| | ||||||||| ||||| |||||||||||| | ||||||||||||||| || Sbjct: 330 tatgtagcagaggataggcaggttcgcttgaggagaatcttttctatgatcatacccgaa 389 Query: 321 ccatgtcatccatgaacaggctccgtaagatcccatagagtggaaatggaatcagtcatg 380 |||||||| |||||||||||||||||||||||| ||| ||| ||| || ||| Sbjct: 390 tcatgtcatgcatgaacaggctccgtaagatcccgtag------aataraatargtgatg 443 Query: 381 tgacatgatccaattctctatttattacacttacct--tttta-ttatagtatggaaatg 437 || ||||||||||| ||||| |||| ||||||| | ||||| ||||||| | |||||| Sbjct: 444 tggcatgatccaatgttctatctattccacttacttaattttatttatagtgtagaaatg 503 Query: 438 cattcattttctttgcatcgat 459 ||||||||| || ||||||||| Sbjct: 504 cattcatttcctctgcatcgat 525 Score = 81.8 bits (41), Expect = 2e-12 Identities = 68/76 (89%), Gaps = 2/76 (2%) Strand = Plus / Plus Query: 21 ttcattgctacaagcatgggttattgtaaa--ataacacatgtcatttggatacttctct 78 ||||||||||||| |||| |||||| ||| |||| |||||| |||||||||||||||| Sbjct: 83 ttcattgctacaaatatggattattgaaaagaataagacatgttatttggatacttctct 142 Query: 79 tcaactccgaagtatt 94 |||||||||||||||| Sbjct: 143 tcaactccgaagtatt 158
>emb|AL607005.3|OSJN00124 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0118P14, complete sequence Length = 158312 Score = 196 bits (99), Expect = 5e-47 Identities = 185/211 (87%), Gaps = 7/211 (3%) Strand = Plus / Minus Query: 6 ggtaggttgtggtatttcattgctacaagcatgggttattgtaaaataacacatgtcatt 65 ||||||||||||||||| ||||||| || |||||||||| |||||||| | |||||||| Sbjct: 24351 ggtaggttgtggtattttattgctataaatatgggttattctaaaataagatatgtcatt 24292 Query: 66 tggatacttctcttcaactccgaagtatttttatacga----tacaaatagttgaagtta 121 | |||||||||||||||||||||| |||| | |||| | ||||||||||| || ||| Sbjct: 24291 tagatacttctcttcaactccgaactattgtgatacaaataatacaaatagttaaaatta 24232 Query: 122 attttacgaaagaaaa-aaggcggattatgggagtgtgtgacttgaattattgatttggc 180 |||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||| Sbjct: 24231 attttacgaaagaaaagaaggtggattatgggagtgtgcgacttgaattattgatttggc 24172 Query: 181 catgcagataaagaat--tggatctgccaca 209 ||| |||||| ||| | ||||||||||||| Sbjct: 24171 catacagatagagacttatggatctgccaca 24141 Score = 54.0 bits (27), Expect = 4e-04 Identities = 61/71 (85%), Gaps = 1/71 (1%) Strand = Plus / Minus Query: 239 atccaatcaacatgtaagtcccctacctag-gaaggataggctggttcacttgaggagaa 297 |||||||||||| ||||||||||| |||| ||||||||| | |||| |||||||||| Sbjct: 24129 atccaatcaacacgtaagtcccctgtctagtaaaggataggttaattcaattgaggagaa 24070 Query: 298 tatcttctatg 308 ||| ||||||| Sbjct: 24069 tattttctatg 24059
>gb|AC160949.1| Oryza sativa (japonica cultivar-group) BAC clone OSJNBb0006E22, complete sequence Length = 128256 Score = 172 bits (87), Expect = 7e-40 Identities = 99/103 (96%) Strand = Plus / Plus Query: 308 gatcataccgcaaccatgtcatccatgaacaggctccgtaagatcccatagagtggaaat 367 ||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||| Sbjct: 56640 gatcatacctcaaccatgtcatccatgaagaggctccgtaagatcccatagagtagaaat 56699 Query: 368 ggaatcagtcatgtgacatgatccaattctctatttattacac 410 ||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 56700 ggaataagtcatgtgacatgatccaattctctatttattacac 56742
>gb|AY590863.1| Chloranthus officinalis petB-petD intergenic spacer, partial sequence; and PetD (petD) gene, intron and partial cds; chloroplast Length = 960 Score = 157 bits (79), Expect = 4e-35 Identities = 282/345 (81%), Gaps = 16/345 (4%) Strand = Plus / Plus Query: 17 gtatttcattgctacaagcatgggttattgtaaa--ataacacatgtcatttggatactt 74 ||||||||||||||||| |||| |||||| ||| |||| |||||| ||||||||| || Sbjct: 91 gtatttcattgctacaaatatggattattgaaaagaataagacatgttatttggatattt 150 Query: 75 ctcttcaactccgaagta------tttttatacgatacaaatagttgaagttaattttac 128 | |||||||||||||||| ||||||| ||||| |||||||||||| ||| | | Sbjct: 151 cccttcaactccgaagtattgtattttttatttgatacgaatagttgaagtgtattctcc 210 Query: 129 gaaagaaaaaaggcggattatgggagtgtgtgacttgaattattgatttggccatgcaga 188 ||| | ||| ||||||||||||||||||||||||| |||||||| |||| |||||| Sbjct: 211 gaag---agaagatggattatgggagtgtgtgacttgaactattgattgggccgtgcaga 267 Query: 189 taaagaattggatctgccacattagaattcacaaccaaaggtgtctccgcatccaatcaa 248 || | ||| ||| |||||||| |||||||||||||| ||||||| | ||||| || Sbjct: 268 tatatgattttatccgccacattgaaattcacaaccaaatgtgtctctgt-tccaaccac 326 Query: 249 catgtaagtcccctacctaggaaggataggctggttcacttgaggagaatatcttctatg 308 | |||||| |||||| || ||| ||||| |||||||||||||||||| | ||||||| Sbjct: 327 cgcgtaagttccctac--ag--agggtaggccggttcacttgaggagaatcttttctatg 382 Query: 309 atcataccgcaaccatgtcatccatgaacaggctccgtaagatcc 353 |||| ||| || |||||||| ||||||||||||||||||||||| Sbjct: 383 atcagacccgaatcatgtcatgcatgaacaggctccgtaagatcc 427 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 424 atagtatggaaatgcattcattttctttgcat 455 ||||||||||||||||||||||| |||||||| Sbjct: 485 atagtatggaaatgcattcatttcctttgcat 516
>gb|AY590839.1| Orontium aquaticum petB-petD intergenic spacer, partial sequence; and PetD (petD) gene, intron and partial cds; chloroplast Length = 968 Score = 153 bits (77), Expect = 6e-34 Identities = 138/156 (88%), Gaps = 3/156 (1%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatttggccatgcagataaagaattggatc 202 ||||||||||||||||||||||||| |||||||| ||||||||||||| | ||| ||| Sbjct: 198 ggattatgggagtgtgtgacttgaactattgattgggccatgcagatatatgattttatc 257 Query: 203 tgccacattagaattcacaaccaaaggtgtctccgcatccaatcaacatgtaag--tccc 260 |||||||||||||||||||||||| ||||||||||||||||||| || ||||| |||| Sbjct: 258 cgccacattagaattcacaaccaaatgtgtctccgcatccaatcaccacgtaagtctccc 317 Query: 261 ctacctagga-aggataggctggttcacttgaggag 295 |||| ||| | ||| ||||||||||| ||||||||| Sbjct: 318 ctacgtagcagagggtaggctggttcgcttgaggag 353 Score = 81.8 bits (41), Expect = 2e-12 Identities = 71/80 (88%), Gaps = 2/80 (2%) Strand = Plus / Plus Query: 17 gtatttcattgctacaagcatgggttattgtaaa--ataacacatgtcatttggatactt 74 ||||||||||||||||| |||| |||||| ||| |||| |||||| ||||||||| || Sbjct: 59 gtatttcattgctacaaatatggattattgaaaataataagacatgttatttggatattt 118 Query: 75 ctcttcaactccgaagtatt 94 |||||||||||||||||||| Sbjct: 119 ctcttcaactccgaagtatt 138 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 422 ttatagtatggaaatgcattcattttctttgcatc 456 ||||||||||||||||||| ||||| ||||||||| Sbjct: 481 ttatagtatggaaatgcatccatttcctttgcatc 515 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 321 ccatgtcatccatgaacaggctccgtaagatcccataga 359 ||||||||| ||||| |||||||||||||||||| |||| Sbjct: 390 ccatgtcatgcatgagcaggctccgtaagatcccgtaga 428
>gb|M35995.1|RICCPETB Rice chloroplast apocytochrome b6 (petB) gene, complete cds Length = 1682 Score = 147 bits (74), Expect = 4e-32 Identities = 89/94 (94%) Strand = Plus / Plus Query: 1 tatcgggtaggttgtggtatttcattgctacaagcatgggttattgtaaaataacacatg 60 ||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||| Sbjct: 1567 tatcgggtaggttgtggtatttcattgctacaaacatgggttattctaaaataagacatg 1626 Query: 61 tcatttggatacttctcttcaactccgaagtatt 94 |||||| |||||||||||||||||||||| |||| Sbjct: 1627 tcatttagatacttctcttcaactccgaactatt 1660
>gb|AY590866.1| Schisandra chinensis petB-petD intergenic spacer, partial sequence; and PetD (petD) gene, intron and partial cds; chloroplast Length = 910 Score = 145 bits (73), Expect = 2e-31 Identities = 188/222 (84%), Gaps = 7/222 (3%) Strand = Plus / Plus Query: 17 gtatttcattgctacaagcatgggttattgtaaa--ataacacatgtcatttggatactt 74 ||||||||||||||||| |||| |||||| ||| |||| |||||| ||||||||| || Sbjct: 35 gtatttcattgctacaaatatggattattgaaaagaataagacatgttatttggatattt 94 Query: 75 ctcttcaactccgaagtattttt-atacgatacaaatagttgaagttaattttacgaaag 133 | ||||||||||||||||||||| || ||||| |||||||||||| |||| | || ||| Sbjct: 95 cccttcaactccgaagtattttttatttgatacgaatagttgaagtgaattct-cggaag 153 Query: 134 aaaaaaggcggattatgggagtgtgtgacttgaattattgatttggccatgcagataaag 193 | | | || ||||||||||||||||||||||| |||||||| |||||||| |||| | Sbjct: 154 agagatgg---attatgggagtgtgtgacttgaactattgattgggccatgcggatatat 210 Query: 194 aattggatctgccacattagaattcacaaccaaaggtgtctc 235 |||| |||| |||||||| ||||||||| ||||| ||||||| Sbjct: 211 aatttgatccgccacattggaattcacacccaaatgtgtctc 252 Score = 67.9 bits (34), Expect = 3e-08 Identities = 73/85 (85%), Gaps = 2/85 (2%) Strand = Plus / Plus Query: 271 aggataggctggttcacttgaggagaatatcttctatgatcataccgcaaccatg--tca 328 ||||||||||||||| |||||||||||| | ||||||||||| ||| || |||| || Sbjct: 280 aggataggctggttcgcttgaggagaatcttttctatgatcagacccgaatcatgtctcg 339 Query: 329 tccatgaacaggctccgtaagatcc 353 | ||||| ||||||||||||||||| Sbjct: 340 tgcatgagcaggctccgtaagatcc 364 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 422 ttatagtatggaaatgcattcattttctttgcat 455 ||||||||||||||||||||||||| || ||||| Sbjct: 437 ttatagtatggaaatgcattcatttcctctgcat 470
>gb|AY590854.1| Tasmannia insipida petB-petD intergenic spacer, partial sequence; and PetD (petD) gene, intron and partial cds; chloroplast Length = 929 Score = 143 bits (72), Expect = 6e-31 Identities = 179/212 (84%), Gaps = 2/212 (0%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatttggccatgcagataaagaattggatc 202 |||||||||||||||||||||||| |||||||| |||| |||||||| | |||| ||| Sbjct: 194 ggattatgggagtgtgtgacttgacctattgattgggccgtgcagatagataattttatc 253 Query: 203 tgccacattagaattcacaaccaaaggtgtctccgcatccaatcaacatgtaagtccc-c 261 ||||||||| |||||||||| |||| |||||| | | ||||| || | | ||||||| | Sbjct: 254 tgccacattggaattcacaaacaaatgtgtct-ctcttccaaccaccgcggaagtccctc 312 Query: 262 tacctaggaaggataggctggttcacttgaggagaatatcttctatgatcataccgcaac 321 ||| || ||||||||||||||| |||||||||||| | ||||||||||| ||| || Sbjct: 313 tacagagagaggataggctggttcgcttgaggagaatcttttctatgatcagacccgaat 372 Query: 322 catgtcatccatgaacaggctccgtaagatcc 353 |||||| | ||||||||||||||||||||||| Sbjct: 373 catgtcgtgcatgaacaggctccgtaagatcc 404 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 422 ttatagtatggaaatgcattcattttctttgcatc 456 ||||||||||||||||||||||||| || |||||| Sbjct: 459 ttatagtatggaaatgcattcatttcctctgcatc 493 Score = 44.1 bits (22), Expect = 0.43 Identities = 28/30 (93%) Strand = Plus / Plus Query: 17 gtatttcattgctacaagcatgggttattg 46 ||||||||||||||||| ||||| |||||| Sbjct: 59 gtatttcattgctacaaacatggattattg 88
>gb|AY590851.1| Canella winterana petB-petD intergenic spacer, partial sequence; and PetD (petD) gene, intron and partial cds; chloroplast Length = 923 Score = 137 bits (69), Expect = 4e-29 Identities = 178/211 (84%), Gaps = 5/211 (2%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatttggccatgcagataaagaattggatc 202 ||||||||||||||||||||||||| |||||||| |||| |||||||| | ||| ||| Sbjct: 194 ggattatgggagtgtgtgacttgaactattgattaggccgtgcagatatatgattttatc 253 Query: 203 tgccacattagaattcacaaccaaaggtgtctccgcatccaatcaacatgtaagtcccct 262 |||||||| ||||||||||||||| ||||||| | ||||| || | | ||||||||| Sbjct: 254 cgccacattggaattcacaaccaaatgtgtctctg-ttccaaccaccgcggaagtcccct 312 Query: 263 acctaggaaggataggctggttcacttgaggagaatatcttctatgatcataccgcaacc 322 || || ||||||||||||||| |||||||||||| ||||||||||| ||| || | Sbjct: 313 ac--ag--aggataggctggttcgcttgaggagaatcctttctatgatcagaccctaatc 368 Query: 323 atgtcatccatgaacaggctccgtaagatcc 353 ||||| | ||||||||||||||||||||||| Sbjct: 369 atgtcgtacatgaacaggctccgtaagatcc 399 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Plus Query: 422 ttatagtatggaaatgcattcattttctttgcatc 456 |||||||||||||||||| |||||| || |||||| Sbjct: 454 ttatagtatggaaatgcagtcatttcctctgcatc 488 Score = 46.1 bits (23), Expect = 0.11 Identities = 59/70 (84%), Gaps = 2/70 (2%) Strand = Plus / Plus Query: 17 gtatttcattgctacaagcatgggttattgtaa--aataacacatgtcatttggatactt 74 ||||||||||||||||| ||||| |||||| || | ||| |||||| ||||||| | || Sbjct: 59 gtatttcattgctacaaacatggattattgaaaagattaatacatgttatttggaaattt 118 Query: 75 ctcttcaact 84 | |||||||| Sbjct: 119 cccttcaact 128
>gb|AY590841.1| Ceratophyllum demersum petB-petD intergenic spacer, partial sequence; and PetD (petD) gene, intron and partial cds; chloroplast Length = 903 Score = 135 bits (68), Expect = 2e-28 Identities = 248/304 (81%), Gaps = 12/304 (3%) Strand = Plus / Plus Query: 56 acatgtcatttggatacttctcttcaactccgaagtatttttatacgatacaaatagttg 115 |||||| |||| |||| ||||||||||||||||||||||| | | ||||| |||||||| Sbjct: 104 acatgttatttagatatttctcttcaactccgaagtatttattt--gatacgaatagttg 161 Query: 116 aagttaattttacgaaagaaaaaaggcggattatgggagtgtgtgacttgaattattgat 175 |||| ||| | |||| | ||| ||||||||||||||||||||||||| ||||||| Sbjct: 162 aagtagattctccgaag---agaagctggattatgggagtgtgtgacttgaactattgat 218 Query: 176 ttggccatgcagataa-----agaattggatctgccacattagaattcacaaccaaaggt 230 | |||| ||||||||| | ||| ||||||||||||| ||||||| ||||||| || Sbjct: 219 tgggccgtgcagataagatatatgatttgatctgccacattggaattcaaaaccaaatgt 278 Query: 231 gtctccgcatccaatcaacatgtaagtccc-ctacctaggaaggataggctggttcactt 289 ||||| | || || || | ||||||| | |||| ||||||||||||||||||| ||| Sbjct: 279 gtctctgtttc-aaccancgcgtaagtctctctacagaggaaggataggctggttcgctt 337 Query: 290 gaggagaatatcttctatgatcataccgcaaccatgtcatccatgaacaggctccgtaag 349 ||||||||| | ||||||||||| || || |||||||| ||||| ||| ||||||||| Sbjct: 338 gaggagaatcttttctatgatcagacgaaaatcatgtcatacatgagcagactccgtaag 397 Query: 350 atcc 353 |||| Sbjct: 398 atcc 401 Score = 63.9 bits (32), Expect = 5e-07 Identities = 53/60 (88%) Strand = Plus / Plus Query: 424 atagtatggaaatgcattcattttctttgcatcgattgtgatccgcaatactatcggagt 483 |||||||| |||||||||||||| |||||||||||| ||||| |||||||||||||| Sbjct: 467 atagtatgtaaatgcattcatttcctttgcatcgatcttgatctagaatactatcggagt 526
>gb|AY590865.1| Illicium floridanum petB-petD intergenic spacer, partial sequence; and PetD (petD) gene, intron and partial cds; chloroplast Length = 910 Score = 129 bits (65), Expect = 9e-27 Identities = 159/187 (85%), Gaps = 5/187 (2%) Strand = Plus / Plus Query: 50 aataacacatgtcatttggatacttctcttcaactccgaagtattttt-atacgatacaa 108 ||||| |||||| ||||||||| ||| ||||||||||||||||||||| || ||||| | Sbjct: 76 aataagacatgttatttggatatttcccttcaactccgaagtattttttatttgatacga 135 Query: 109 atagttgaagttaattttacgaaagaaaaaaggcggattatgggagtgtgtgacttgaat 168 ||||||||||| |||| | || |||| | | || ||||||||||||||||||||||| Sbjct: 136 atagttgaagtgaattct-cggaagagagatgg---attatgggagtgtgtgacttgaac 191 Query: 169 tattgatttggccatgcagataaagaattggatctgccacattagaattcacaaccaaag 228 |||||||| ||||||||||||| | ||| ||| |||||||| ||||||||||||||| Sbjct: 192 tattgattgggccatgcagatatatgattttatccgccacattggaattcacaaccaaat 251 Query: 229 gtgtctc 235 ||||||| Sbjct: 252 gtgtctc 258 Score = 67.9 bits (34), Expect = 3e-08 Identities = 73/85 (85%), Gaps = 2/85 (2%) Strand = Plus / Plus Query: 271 aggataggctggttcacttgaggagaatatcttctatgatcataccgcaaccatg--tca 328 ||||||||||||||| ||||||||||||| ||||||||||| ||| || |||| || Sbjct: 286 aggataggctggttcgcttgaggagaatactttctatgatcagacccgaatcatgtctcg 345 Query: 329 tccatgaacaggctccgtaagatcc 353 | ||||| ||||||||||||||||| Sbjct: 346 tgcatgagcaggctccgtaagatcc 370 Score = 60.0 bits (30), Expect = 7e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 422 ttatagtatggaaatgcattcattttctttgcatcgat 459 ||||||||||||||||||||||||| || ||||||||| Sbjct: 437 ttatagtatggaaatgcattcatttcctctgcatcgat 474
>gb|AY590834.1| Platanus occidentalis petB-petD intergenic spacer, partial sequence; and PetD (petD) gene, intron and partial cds; chloroplast Length = 927 Score = 121 bits (61), Expect = 2e-24 Identities = 176/211 (83%), Gaps = 5/211 (2%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatttggccatgcagataaagaattggatc 202 ||||||||||||||||||||||||| |||||||| ||| |||||||| | ||| ||| Sbjct: 196 ggattatgggagtgtgtgacttgaactattgattgagccgtgcagatatatgattttatc 255 Query: 203 tgccacattagaattcacaaccaaaggtgtctccgcatccaatcaacatgtaagtcccct 262 |||||||| ||||||||||||||| ||||||| | ||||| || | |||||| ||| | Sbjct: 256 cgccacattggaattcacaaccaaatgtgtctctg-ttccaaccaccgtgtaagccccat 314 Query: 263 acctaggaaggataggctggttcacttgaggagaatatcttctatgatcataccgcaacc 322 || || ||||||||||||||| |||||||||||| | ||||||||||| || || | Sbjct: 315 ac--ag--aggataggctggttcgcttgaggagaatcttttctatgatcagacacgaatc 370 Query: 323 atgtcatccatgaacaggctccgtaagatcc 353 ||||| | |||||||||||||||||| |||| Sbjct: 371 atgtcgtgcatgaacaggctccgtaaaatcc 401 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 424 atagtatggaaatgcattcattttctttgcatcga 458 ||||||||||||||||||||||| || |||||||| Sbjct: 459 atagtatggaaatgcattcatttcctctgcatcga 493
>gb|AY590864.1| Chloranthus brachystachys petB-petD intergenic spacer, partial sequence; and PetD (petD) gene, intron and partial cds; chloroplast Length = 929 Score = 111 bits (56), Expect = 2e-21 Identities = 178/216 (82%), Gaps = 10/216 (4%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatttggccatgcagataaagaattggatc 202 ||||||||||||||||||||||||| |||||||| |||| |||||||| | ||| ||| Sbjct: 191 ggattatgggagtgtgtgacttgaactattgattgggccgtgcagatatatgattttatc 250 Query: 203 tgccacattagaattcacaaccaaaggtgtctccgcatccaatcaacatgtaagtcccct 262 |||||||| |||||||||||||| ||||||| | ||||| || | ||||| ||||| Sbjct: 251 cgccacattgaaattcacaaccaaatgtgtctctg-ttccaaccaccgcgtaagccccct 309 Query: 263 acctaggaaggataggctggttcacttgaggagaatatcttctatgatcataccgcaacc 322 || || ||| |||||||||||||||||||||||| | ||||||||||| ||| || | Sbjct: 310 ac--ag--agggtaggctggttcacttgaggagaatcttttctatgatcagacccgaatc 365 Query: 323 a-----tgtcatccatgaacaggctccgtaagatcc 353 | |||| | ||||||||||||||||||||||| Sbjct: 366 atgtcrtgtcrtgcatgaacaggctccgtaagatcc 401 Score = 73.8 bits (37), Expect = 5e-10 Identities = 70/80 (87%), Gaps = 2/80 (2%) Strand = Plus / Plus Query: 17 gtatttcattgctacaagcatgggttattgtaaa--ataacacatgtcatttggatactt 74 ||||||||||||||||| |||| |||||| ||| |||| |||||| ||||||||| || Sbjct: 60 gtatttcattgctacaaatatggattattgaaaagaataagacatgttatttggatattt 119 Query: 75 ctcttcaactccgaagtatt 94 | |||||||||||||||||| Sbjct: 120 cccttcaactccgaagtatt 139 Score = 54.0 bits (27), Expect = 4e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 425 tagtatggaaatgcattcattttctttgcat 455 |||||||||||||||||||||| |||||||| Sbjct: 465 tagtatggaaatgcattcatttcctttgcat 495
>gb|AY590860.1| Houttuynia cordata petB-petD intergenic spacer, partial sequence; and PetD (petD) gene, intron and partial cds; chloroplast Length = 922 Score = 111 bits (56), Expect = 2e-21 Identities = 175/212 (82%), Gaps = 2/212 (0%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatttggccatgcagataaagaattggatc 202 ||||||||||||||||||||||||| |||||||| ||| |||||||| | ||| |||| Sbjct: 192 ggattatgggagtgtgtgacttgaactattgattgagccgtgcagatatatgatttgatc 251 Query: 203 tgccacattagaattcacaaccaaaggtgtctccgcatccaatcaacatgtaagt-cccc 261 |||||||| |||||||||| |||| ||||||| | ||||| || || |||| | |||| Sbjct: 252 cgccacattggaattcacaatcaaatgtgtctctg-ttccaaccaccacgtaattccccc 310 Query: 262 tacctaggaaggataggctggttcacttgaggagaatatcttctatgatcataccgcaac 321 ||| | ||| ||||| ||||| |||||||||||| | ||||||||||| ||| || Sbjct: 311 tacagacagagggtaggccggttcgcttgaggagaatcttttctatgatcagaccagaat 370 Query: 322 catgtcatccatgaacaggctccgtaagatcc 353 ||||| | ||||||||||||||||||||||| Sbjct: 371 catgttgtgcatgaacaggctccgtaagatcc 402 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Plus Query: 422 ttatagtatggaaatgcattcattttctttgcatc 456 |||||||||||||||||||| |||| || |||||| Sbjct: 457 ttatagtatggaaatgcatttatttcctgtgcatc 491
>gb|AY590845.1| Magnolia sieboldii petB-petD intergenic spacer, partial sequence; and PetD (petD) gene, intron and partial cds; chloroplast Length = 913 Score = 109 bits (55), Expect = 9e-21 Identities = 175/212 (82%), Gaps = 6/212 (2%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatttggccatgcagataaagaattggatc 202 ||||||||||||||||||||||||| |||||||| ||||||||||||| | ||| ||| Sbjct: 194 ggattatgggagtgtgtgacttgaactattgattgggccatgcagatatatgattttatc 253 Query: 203 tgccacattagaattcacaaccaaaggtgtctccgcatccaatcaacatgtaagtc-ccc 261 || | |||| ||||||||||||||| ||||||| | ||||| || | ||||||| ||| Sbjct: 254 tgtcgcattggaattcacaaccaaatgtgtctctg-ttccaaccaccgcgtaagtctccc 312 Query: 262 tacctaggaaggataggctggttcacttgaggagaatatcttctatgatcataccgcaac 321 ||| |||| ||||||||||| |||||||||||| | ||||||||||| ||| || Sbjct: 313 tacagagga----taggctggttcgcttgaggagaatcttttctatgatcagacccgaat 368 Query: 322 catgtcatccatgaacaggctccgtaagatcc 353 |||| | |||||||||||||||||| |||| Sbjct: 369 tatgttgtgcatgaacaggctccgtaaaatcc 400 Score = 54.0 bits (27), Expect = 4e-04 Identities = 60/70 (85%), Gaps = 2/70 (2%) Strand = Plus / Plus Query: 17 gtatttcattgctacaagcatgggttattgtaa--aataacacatgtcatttggatactt 74 ||||||||||||||||| |||| |||||| || ||||| |||||| ||||||||| || Sbjct: 59 gtatttcattgctacaaatatggattattgaaaagaataagacatgttatttggatattt 118 Query: 75 ctcttcaact 84 | |||||||| Sbjct: 119 cccttcaact 128 Score = 44.1 bits (22), Expect = 0.43 Identities = 35/38 (92%), Gaps = 1/38 (2%) Strand = Plus / Plus Query: 422 ttatagtatggaaatgcattcattttctttgcatcgat 459 |||||||||| |||||||||||||| || ||||||||| Sbjct: 455 ttatagtatg-aaatgcattcatttcctctgcatcgat 491
>gb|AY590832.1| Buxus sempervirens petB-petD intergenic spacer, partial sequence; and PetD (petD) gene, intron and partial cds; chloroplast Length = 938 Score = 109 bits (55), Expect = 9e-21 Identities = 174/211 (82%), Gaps = 5/211 (2%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatttggccatgcagataaagaattggatc 202 ||||||||||||||||||||||||| |||||||| | || |||||||| | ||| ||| Sbjct: 189 ggattatgggagtgtgtgacttgaactattgattggtccgtgcagatatatgattttatc 248 Query: 203 tgccacattagaattcacaaccaaaggtgtctccgcatccaatcaacatgtaagtcccct 262 |||||||| ||||||||||||||| ||||||| | ||||| || || ||||| ||| Sbjct: 249 cgccacattggaattcacaaccaaatgtgtctctg-ttccaaccaccacgtaag--cccy 305 Query: 263 acctaggaaggataggctggttcacttgaggagaatatcttctatgatcataccgcaacc 322 | ||| ||||||||||||||| |||||||||||| | ||||||||||| || || Sbjct: 306 atatag--aggataggctggttcgcttgaggagaatcttttctatgatcagactataatt 363 Query: 323 atgtcatccatgaacaggctccgtaagatcc 353 ||||| | ||||||| ||||||||||||||| Sbjct: 364 atgtcgtgcatgaacgggctccgtaagatcc 394 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 424 atagtatggaaatgcattcattttctttgcatcgat 459 ||||||||||||||||||||||| || ||||||||| Sbjct: 452 atagtatggaaatgcattcatttcctctgcatcgat 487
>gb|AY590867.1| Austrobaileya scandens petB-petD intergenic spacer, partial sequence; and PetD (petD) gene, intron and partial cds; chloroplast Length = 900 Score = 105 bits (53), Expect = 1e-19 Identities = 83/93 (89%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatttggccatgcagataaagaattggatc 202 ||||||||||||||||||||||||| |||||||| |||| |||||||| | ||| ||| Sbjct: 172 ggattatgggagtgtgtgacttgaactattgattgggccgtgcagatatatgattttatc 231 Query: 203 tgccacattagaattcacaaccaaaggtgtctc 235 ||||||||| ||||||||||||||| ||||||| Sbjct: 232 tgccacattggaattcacaaccaaatgtgtctc 264 Score = 85.7 bits (43), Expect = 1e-13 Identities = 73/83 (87%) Strand = Plus / Plus Query: 271 aggataggctggttcacttgaggagaatatcttctatgatcataccgcaaccatgtcatc 330 ||||||||||||||| |||||||||||| | ||||||||||| ||| || |||||| | Sbjct: 292 aggataggctggttcgcttgaggagaatcttttctatgatcagacccgaatcatgtcgtg 351 Query: 331 catgaacaggctccgtaagatcc 353 ||||| ||||||||||||||||| Sbjct: 352 catgagcaggctccgtaagatcc 374 Score = 60.0 bits (30), Expect = 7e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 422 ttatagtatggaaatgcattcattttctttgcatcgat 459 ||||||||||||||||||||||||| || ||||||||| Sbjct: 429 ttatagtatggaaatgcattcatttcctctgcatcgat 466 Score = 58.0 bits (29), Expect = 3e-05 Identities = 65/76 (85%), Gaps = 2/76 (2%) Strand = Plus / Plus Query: 17 gtatttcattgctacaagcatgggttattgtaaa--ataacacatgtcatttggatactt 74 ||||||||||||||||| |||| ||||| ||| |||| |||||| ||||||||| || Sbjct: 35 gtatttcattgctacaaatatggattatttaaaataataagacatgttatttggatattt 94 Query: 75 ctcttcaactccgaag 90 | |||||||||||||| Sbjct: 95 cccttcaactccgaag 110
>gb|AY590862.1| Aristolochia pistolochia petB-petD intergenic spacer, partial sequence; and PetD (petD) gene, intron and partial cds; chloroplast Length = 918 Score = 105 bits (53), Expect = 1e-19 Identities = 83/93 (89%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatttggccatgcagataaagaattggatc 202 ||||||||||||||||||||||||| |||||||| |||| |||||||| | ||| ||| Sbjct: 196 ggattatgggagtgtgtgacttgaactattgattgggccgtgcagatatatgattttatc 255 Query: 203 tgccacattagaattcacaaccaaaggtgtctc 235 ||||||||| ||||||||||||||| ||||||| Sbjct: 256 tgccacattggaattcacaaccaaatgtgtctc 288 Score = 97.6 bits (49), Expect = 3e-17 Identities = 79/89 (88%) Strand = Plus / Plus Query: 271 aggataggctggttcacttgaggagaatatcttctatgatcataccgcaaccatgtcatc 330 |||||||||||||||||||||||||||| | ||||||||||| ||| || ||||| | Sbjct: 319 aggataggctggttcacttgaggagaatcttttctatgatcagaccctaatcatgttgtg 378 Query: 331 catgaacaggctccgtaagatcccataga 359 ||||||||||||||||||||||| ||||| Sbjct: 379 catgaacaggctccgtaagatccgataga 407 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 422 ttatagtatggaaatgcattcattttctttgcatcgat 459 |||||||||||||| |||||||||| || ||||||||| Sbjct: 451 ttatagtatggaaacgcattcatttcctgtgcatcgat 488
>gb|AY590846.1| Magnolia officinalis petB-petD intergenic spacer, partial sequence; and PetD (petD) gene, intron and partial cds; chloroplast Length = 918 Score = 105 bits (53), Expect = 1e-19 Identities = 174/212 (82%), Gaps = 6/212 (2%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatttggccatgcagataaagaattggatc 202 ||||||||||||||||||||||||| |||||||| ||||||||||||| | ||| ||| Sbjct: 194 ggattatgggagtgtgtgacttgaactattgattgggccatgcagatatatgattytatc 253 Query: 203 tgccacattagaattcacaaccaaaggtgtctccgcatccaatcaacatgtaagtc-ccc 261 || | |||| ||||| ||||||||| ||||||| | ||||| || | ||||||| ||| Sbjct: 254 tgtcgcattggaattyacaaccaaatgtgtctctg-ttccaaccaccgcgtaagtctccc 312 Query: 262 tacctaggaaggataggctggttcacttgaggagaatatcttctatgatcataccgcaac 321 ||| |||| ||||||||||| |||||||||||| | ||||||||||| ||| || Sbjct: 313 tacagagga----taggctggttcgcttgaggagaatcttttctatgatcagacccgaat 368 Query: 322 catgtcatccatgaacaggctccgtaagatcc 353 |||| | |||||||||||||||||| |||| Sbjct: 369 tatgttgtgcatgaacaggctccgtaaaatcc 400 Score = 54.0 bits (27), Expect = 4e-04 Identities = 60/70 (85%), Gaps = 2/70 (2%) Strand = Plus / Plus Query: 17 gtatttcattgctacaagcatgggttattgtaa--aataacacatgtcatttggatactt 74 ||||||||||||||||| |||| |||||| || ||||| |||||| ||||||||| || Sbjct: 59 gtatttcattgctacaaatatggattattgaaaagaataagacatgttatttggatattt 118 Query: 75 ctcttcaact 84 | |||||||| Sbjct: 119 cccttcaact 128 Score = 44.1 bits (22), Expect = 0.43 Identities = 35/38 (92%), Gaps = 1/38 (2%) Strand = Plus / Plus Query: 422 ttatagtatggaaatgcattcattttctttgcatcgat 459 |||||||||| |||||||||||||| || ||||||||| Sbjct: 455 ttatagtatg-aaatgcattcatttcctctgcatcgat 491
>gb|AY590842.1| Asimina triloba petB-petD intergenic spacer, partial sequence; and PetD (petD) gene, intron and partial cds; chloroplast Length = 971 Score = 103 bits (52), Expect = 5e-19 Identities = 145/172 (84%), Gaps = 3/172 (1%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatttggccatgcagataaagaattggatc 202 ||||||||||||||||||||||||| |||||||| |||| |||||||| | ||| || Sbjct: 194 ggattatgggagtgtgtgacttgaactattgattgggccgtgcagatatatgatttcctc 253 Query: 203 tgccacattagaattcacaaccaaaggtgtctccgcatccaatcaacatgtaagtcc-cc 261 |||| ||| ||||||||||||||||||||||| | ||||| || | |||||||| || Sbjct: 254 tgccgcatgggaattcacaaccaaaggtgtctctg-ttccaaccaccgcgtaagtccacc 312 Query: 262 tac-ctaggaaggataggctggttcacttgaggagaatatcttctatgatca 312 ||| ||| | ||||||||| ||||| |||||||||||| | ||||||||||| Sbjct: 313 tacactacggaggataggccggttcgcttgaggagaatcttttctatgatca 364 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 432 gaaatgcattcattttctttgcat 455 ||||||||||||||| |||||||| Sbjct: 474 gaaatgcattcatttcctttgcat 497
>gb|AY590844.1| Liriodendron tulipifera petB-petD intergenic spacer, partial sequence; and PetD (petD) gene, intron and partial cds; chloroplast Length = 917 Score = 101 bits (51), Expect = 2e-18 Identities = 174/212 (82%), Gaps = 6/212 (2%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatttggccatgcagataaagaattggatc 202 ||||||||||||||||||||||||| |||||||| ||| |||||||| | ||| ||| Sbjct: 194 ggattatgggagtgtgtgacttgaactattgattgggctgtgcagatatatgattttatc 253 Query: 203 tgccacattagaattcacaaccaaaggtgtctccgcatccaatcaacatgtaagtc-ccc 261 |||| |||| ||||||||||||||| ||||||| | ||||| || | ||||||| ||| Sbjct: 254 tgccgcattggaattcacaaccaaatgtgtctctg-ttccaaccaccgcgtaagtctccc 312 Query: 262 tacctaggaaggataggctggttcacttgaggagaatatcttctatgatcataccgcaac 321 ||| |||| ||||||||||| |||||||||||| | ||||||||||| ||| || Sbjct: 313 tacagagga----taggctggttcgcttgaggagaatcttttctatgatcagacccgaat 368 Query: 322 catgtcatccatgaacaggctccgtaagatcc 353 |||| | |||||||||||||||||| |||| Sbjct: 369 tatgttgtgcatgaacaggctccgtaaaatcc 400 Score = 54.0 bits (27), Expect = 4e-04 Identities = 60/70 (85%), Gaps = 2/70 (2%) Strand = Plus / Plus Query: 17 gtatttcattgctacaagcatgggttattgtaa--aataacacatgtcatttggatactt 74 ||||||||||||||||| |||| |||||| || ||||| |||||| ||||||||| || Sbjct: 59 gtatttcattgctacaaatatggattattgaaaagaataagacatgttatttggatattt 118 Query: 75 ctcttcaact 84 | |||||||| Sbjct: 119 cccttcaact 128 Score = 44.1 bits (22), Expect = 0.43 Identities = 35/38 (92%), Gaps = 1/38 (2%) Strand = Plus / Plus Query: 422 ttatagtatggaaatgcattcattttctttgcatcgat 459 |||||||||| |||||||||||||| || ||||||||| Sbjct: 455 ttatagtatg-aaatgcattcatttcctctgcatcgat 491
>gb|AY590858.1| Lactoris fernandeziana petB-petD intergenic spacer, partial sequence; and PetD (petD) gene, intron and partial cds; chloroplast Length = 929 Score = 97.6 bits (49), Expect = 3e-17 Identities = 82/93 (88%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatttggccatgcagataaagaattggatc 202 ||||||||||||||||||||||||| |||||||| |||| |||||||| | ||| ||| Sbjct: 199 ggattatgggagtgtgtgacttgaactattgattgggccgtgcagatatattattttatc 258 Query: 203 tgccacattagaattcacaaccaaaggtgtctc 235 |||||||| ||||||||||||||| ||||||| Sbjct: 259 cgccacattggaattcacaaccaaatgtgtctc 291 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 271 aggataggctggttcacttgaggagaatatcttctatgatca 312 ||||||||| ||||| |||||| ||||||| ||||||||||| Sbjct: 323 aggataggccggttcgcttgagaagaatattttctatgatca 364
>gb|AY590853.1| Pseudowintera colorata petB-petD intergenic spacer, partial sequence; and PetD (petD) gene, intron and partial cds; chloroplast Length = 936 Score = 97.6 bits (49), Expect = 3e-17 Identities = 82/93 (88%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatttggccatgcagataaagaattggatc 202 |||||||||||||||||||||||| |||||||| |||| |||||||| | |||| ||| Sbjct: 198 ggattatgggagtgtgtgacttgacctattgattgggccgtgcagatagataattttatc 257 Query: 203 tgccacattagaattcacaaccaaaggtgtctc 235 ||||||||| |||||||||| |||| ||||||| Sbjct: 258 tgccacattggaattcacaaacaaatgtgtctc 290 Score = 93.7 bits (47), Expect = 5e-16 Identities = 74/83 (89%) Strand = Plus / Plus Query: 271 aggataggctggttcacttgaggagaatatcttctatgatcataccgcaaccatgtcatc 330 ||||||||||||||| |||||||||||| | ||||||||||| ||| || |||||| | Sbjct: 324 aggataggctggttcgcttgaggagaatcttttctatgatcagacccgaatcatgtcgtt 383 Query: 331 catgaacaggctccgtaagatcc 353 ||||||||||||||||||||||| Sbjct: 384 catgaacaggctccgtaagatcc 406 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 422 ttatagtatggaaatgcattcattttctttgcatc 456 ||||||||||||||||||||||||| || |||||| Sbjct: 461 ttatagtatggaaatgcattcatttcctctgcatc 495 Score = 44.1 bits (22), Expect = 0.43 Identities = 58/69 (84%), Gaps = 2/69 (2%) Strand = Plus / Plus Query: 18 tatttcattgctacaagcatgggttattgtaa--aataacacatgtcatttggatacttc 75 |||||||||||||||| ||||| |||||| || ||||| ||||| |||| |||| ||| Sbjct: 64 tatttcattgctacaaacatggattattgaaaagaataagacatggtatttagatatttc 123 Query: 76 tcttcaact 84 |||||||| Sbjct: 124 ccttcaact 132
>gb|AY590852.1| Drimys winteri petB-petD intergenic spacer, partial sequence; and PetD (petD) gene, intron and partial cds; chloroplast Length = 926 Score = 97.6 bits (49), Expect = 3e-17 Identities = 82/93 (88%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatttggccatgcagataaagaattggatc 202 |||||||||||||||||||||||| |||||||| |||| |||||||| | |||| ||| Sbjct: 198 ggattatgggagtgtgtgacttgacctattgattgggccgtgcagatatataattttatc 257 Query: 203 tgccacattagaattcacaaccaaaggtgtctc 235 ||||||||| |||||||||| |||| ||||||| Sbjct: 258 tgccacattggaattcacaaacaaatgtgtctc 290 Score = 93.7 bits (47), Expect = 5e-16 Identities = 74/83 (89%) Strand = Plus / Plus Query: 271 aggataggctggttcacttgaggagaatatcttctatgatcataccgcaaccatgtcatc 330 ||||||||||||||| |||||||||||| | ||||||||||| ||| || |||||| | Sbjct: 324 aggataggctggttcgcttgaggagaatcttttctatgatcagacccgaatcatgtcgtt 383 Query: 331 catgaacaggctccgtaagatcc 353 ||||||||||||||||||||||| Sbjct: 384 catgaacaggctccgtaagatcc 406 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 422 ttatagtatggaaatgcattcattttctttgcatc 456 ||||||||||||||||||||||||| || |||||| Sbjct: 462 ttatagtatggaaatgcattcatttcctctgcatc 496 Score = 44.1 bits (22), Expect = 0.43 Identities = 58/69 (84%), Gaps = 2/69 (2%) Strand = Plus / Plus Query: 18 tatttcattgctacaagcatgggttattgtaa--aataacacatgtcatttggatacttc 75 |||||||||||||||| ||||| |||||| || ||||| ||||| |||| |||| ||| Sbjct: 64 tatttcattgctacaaacatggattattgaaaataataagacatggtatttagatatttc 123 Query: 76 tcttcaact 84 |||||||| Sbjct: 124 ccttcaact 132
>gb|AY590850.1| Umbellularia californica petB-petD intergenic spacer, partial sequence; and PetD (petD) gene, intron and partial cds; chloroplast Length = 927 Score = 97.6 bits (49), Expect = 3e-17 Identities = 82/93 (88%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatttggccatgcagataaagaattggatc 202 ||||||||||||||||||||||||| |||||||| |||| |||||||| | ||| ||| Sbjct: 193 ggattatgggagtgtgtgacttgaactattgattgggccgtgcagatatatgattttatc 252 Query: 203 tgccacattagaattcacaaccaaaggtgtctc 235 |||||||| ||||||||||||||| ||||||| Sbjct: 253 cgccacattggaattcacaaccaaatgtgtctc 285 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 426 agtatggaaatgcattcattttctttgcatcgat 459 ||||||||||||||||||||| || ||||||||| Sbjct: 468 agtatggaaatgcattcatttcctctgcatcgat 501 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 271 aggataggctggttcacttgaggagaatatcttctatgatca 312 ||||||||||||||| ||| |||||||| | ||||||||||| Sbjct: 317 aggataggctggttcgctttaggagaatcttttctatgatca 358 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 331 catgaacaggctccgtaagatcccataga 359 ||||||| ||||||||||||||| ||||| Sbjct: 381 catgaacgggctccgtaagatccaataga 409
>gb|AY590848.1| Myristica fragrans petB-petD intergenic spacer, partial sequence; and PetD (petD) gene, intron and partial cds; chloroplast Length = 928 Score = 97.6 bits (49), Expect = 3e-17 Identities = 76/85 (89%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatttggccatgcagataaagaattggatc 202 ||||||||||||||||||||||||| ||||||||||||| |||||||| | ||| || Sbjct: 194 ggattatgggagtgtgtgacttgaactattgatttggccgtgcagatatatgattttttc 253 Query: 203 tgccacattagaattcacaaccaaa 227 ||||||||| ||||||||||||||| Sbjct: 254 tgccacattggaattcacaaccaaa 278 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Plus Query: 271 aggataggctggttcacttgaggagaatatcttctatgatcataccgcaaccatgtcatc 330 |||| |||| ||||| |||||||||||| | ||||||||||| ||| || |||| | Sbjct: 317 aggagaggccggttcgcttgaggagaatcttttctatgatcagacccgaattatgttgtg 376 Query: 331 catgaacaggctccgtaagatcc 353 ||||||||||||||||||||||| Sbjct: 377 catgaacaggctccgtaagatcc 399 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 432 gaaatgcattcattttctttgcatcgat 459 ||||||||||||||| || ||||||||| Sbjct: 468 gaaatgcattcatttcctctgcatcgat 495
>gb|AY590838.1| Tofieldia glutinosa petB-petD intergenic spacer, partial sequence; and PetD (petD) gene, intron and partial cds; chloroplast Length = 985 Score = 97.6 bits (49), Expect = 3e-17 Identities = 135/160 (84%), Gaps = 9/160 (5%) Strand = Plus / Plus Query: 204 gccacattagaattcacaaccaaaggtgtctccgcatccaatca------acatgtaagt 257 ||||||||||||||||||| |||| ||||||||||||||||||| ||| |||||| Sbjct: 269 gccacattagaattcacaatcaaatgtgtctccgcatccaatcaccacgtacacgtaagt 328 Query: 258 ccc-ctacctagga-aggataggctggttcacttgaggagaatatcttctatgatcata- 314 ||| |||| ||| | ||||||||||||||| |||||||||||| | ||||||||| ||| Sbjct: 329 cccactacgtagcagaggataggctggttcgcttgaggagaattttttctatgattatac 388 Query: 315 ccgcaaccatgtcatccatgaacaggctccgtaagatccc 354 ||| | ||||||| | |||||| ||||| ||||| ||||| Sbjct: 389 ccgaatccatgtcctgcatgaagaggcttcgtaaaatccc 428 Score = 65.9 bits (33), Expect = 1e-07 Identities = 39/41 (95%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatttggccat 183 ||||||||||||||||||||||||| |||||||| |||||| Sbjct: 203 ggattatgggagtgtgtgacttgaactattgattgggccat 243 Score = 65.9 bits (33), Expect = 1e-07 Identities = 63/72 (87%), Gaps = 2/72 (2%) Strand = Plus / Plus Query: 24 attgctacaagcatgggttattgtaaa--ataacacatgtcatttggatacttctcttca 81 |||||||||| |||| |||||| ||| |||| |||||| ||||||||| ||||||||| Sbjct: 71 attgctacaaatatggattattgaaaataataagacatgttatttggatatttctcttca 130 Query: 82 actccgaagtat 93 |||||||||||| Sbjct: 131 actccgaagtat 142 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 422 ttatagtatggaaatgcattcattttctttgcat 455 |||||||||||||||||||| |||| |||||||| Sbjct: 491 ttatagtatggaaatgcatttatttcctttgcat 524
>gb|AY590843.1| Annona muricata petB-petD intergenic spacer, partial sequence; and PetD (petD) gene, intron and partial cds; chloroplast Length = 979 Score = 95.6 bits (48), Expect = 1e-16 Identities = 144/172 (83%), Gaps = 3/172 (1%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatttggccatgcagataaagaattggatc 202 ||||||||||||||||||||||||| |||||||| |||| |||||||| | ||| || Sbjct: 194 ggattatgggagtgtgtgacttgaactattgattgggccgtgcagatatatgatttcctc 253 Query: 203 tgccacattagaattcacaaccaaaggtgtctccgcatccaatcaacatgtaagtcc-cc 261 |||| || ||||||||||||||||||||||| | ||||| || | |||||||| || Sbjct: 254 tgccgcaagggaattcacaaccaaaggtgtctctg-ttccaaccaccgcgtaagtccacc 312 Query: 262 tac-ctaggaaggataggctggttcacttgaggagaatatcttctatgatca 312 ||| ||| | ||||||||| ||||| |||||||||||| | ||||||||||| Sbjct: 313 tacactacggaggataggccggttcgcttgaggagaatcttttctatgatca 364 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 432 gaaatgcattcattttctttgcat 455 ||||||||||||||| |||||||| Sbjct: 474 gaaatgcattcatttcctttgcat 497
>gb|AY916449.1| Phalaenopsis aphrodite subsp. formosana plastid, complete genome Length = 148964 Score = 95.6 bits (48), Expect = 1e-16 Identities = 75/84 (89%) Strand = Plus / Plus Query: 271 aggataggctggttcacttgaggagaatatcttctatgatcataccgcaaccatgtcatc 330 ||||||||| ||||| |||||||||||||| ||||||||||||||| || | |||||| Sbjct: 78302 aggataggccggttcgcttgaggagaatattttctatgatcatacccgaatcttgtcatg 78361 Query: 331 catgaacaggctccgtaagatccc 354 |||||| ||||||||||||||||| Sbjct: 78362 catgaaaaggctccgtaagatccc 78385 Score = 83.8 bits (42), Expect = 5e-13 Identities = 87/102 (85%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatttggccatgcagataaagaattggatc 202 ||||||||||||||||||||||||| |||||||| | || |||||||| | ||| ||| Sbjct: 78159 ggattatgggagtgtgtgacttgaactattgattggcccgtgcagatatatgattttatc 78218 Query: 203 tgccacattagaattcacaaccaaaggtgtctccgcatccaa 244 |||| || |||||||||||| || |||||||||||||||| Sbjct: 78219 cgccatgttggaattcacaacccaatgtgtctccgcatccaa 78260 Score = 67.9 bits (34), Expect = 3e-08 Identities = 67/78 (85%) Strand = Plus / Plus Query: 20 tttcattgctacaagcatgggttattgtaaaataacacatgtcatttggatacttctctt 79 |||||||||||||| |||| || || ||||||| ||||| |||||||||||||| || Sbjct: 78032 tttcattgctacaaatatggattgtttaaaaataaggcatgttatttggatacttctatt 78091 Query: 80 caactccgaagtattttt 97 |||||| ||||||||||| Sbjct: 78092 caactctgaagtattttt 78109
>gb|AY590847.1| Michelia champaca petB-petD intergenic spacer, partial sequence; and PetD (petD) gene, intron and partial cds; chloroplast Length = 912 Score = 93.7 bits (47), Expect = 5e-16 Identities = 173/212 (81%), Gaps = 6/212 (2%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatttggccatgcagataaagaattggatc 202 ||||||||||||||||||||||||| ||||||| ||||||||||||| | ||| ||| Sbjct: 194 ggattatgggagtgtgtgacttgaactattgatggggccatgcagatatatgattttatc 253 Query: 203 tgccacattagaattcacaaccaaaggtgtctccgcatccaatcaacatgtaagtc-ccc 261 || | |||| ||||||||||||||| ||||||| | ||||| || | ||||||| ||| Sbjct: 254 tgtcgcattggaattcacaaccaaatgtgtctctg-ttccaaccaccgcgtaagtctccc 312 Query: 262 tacctaggaaggataggctggttcacttgaggagaatatcttctatgatcataccgcaac 321 ||| |||| ||||||||||| |||||||||||| | ||||||||||| ||| || Sbjct: 313 tacagagga----taggctggttcgcttgaggagaatcttttctatgatcagacccgaat 368 Query: 322 catgtcatccatgaacaggctccgtaagatcc 353 |||| |||||||||||||||||| |||| Sbjct: 369 tatgttgggcatgaacaggctccgtaaaatcc 400 Score = 54.0 bits (27), Expect = 4e-04 Identities = 60/70 (85%), Gaps = 2/70 (2%) Strand = Plus / Plus Query: 17 gtatttcattgctacaagcatgggttattgtaa--aataacacatgtcatttggatactt 74 ||||||||||||||||| |||| |||||| || ||||| |||||| ||||||||| || Sbjct: 59 gtatttcattgctacaaatatggattattgaaaagaataagacatgttatttggatattt 118 Query: 75 ctcttcaact 84 | |||||||| Sbjct: 119 cccttcaact 128 Score = 44.1 bits (22), Expect = 0.43 Identities = 35/38 (92%), Gaps = 1/38 (2%) Strand = Plus / Plus Query: 422 ttatagtatggaaatgcattcattttctttgcatcgat 459 |||||||||| |||||||||||||| || ||||||||| Sbjct: 455 ttatagtatg-aaatgcattcatttcctctgcatcgat 491
>gb|AY590872.1| Nuphar lutea petB-petD intergenic spacer, partial sequence; and PetD (petD) gene, intron and partial cds; chloroplast Length = 856 Score = 91.7 bits (46), Expect = 2e-15 Identities = 73/82 (89%) Strand = Plus / Plus Query: 271 aggataggctggttcacttgaggagaatatcttctatgatcataccgcaaccatgtcatc 330 ||||||||||||||| |||||||||||| ||||||||||||| ||| || |||||||| Sbjct: 308 aggataggctggttcccttgaggagaatctcttctatgatcagacctgaatcatgtcatg 367 Query: 331 catgaacaggctccgtaagatc 352 |||||| ||||| ||||||||| Sbjct: 368 catgaataggcttcgtaagatc 389 Score = 71.9 bits (36), Expect = 2e-09 Identities = 45/48 (93%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatttggccatgcagata 190 ||||||||||||||||||||||||| |||||||| | ||||||||||| Sbjct: 189 ggattatgggagtgtgtgacttgaactattgattggtccatgcagata 236 Score = 61.9 bits (31), Expect = 2e-06 Identities = 89/106 (83%), Gaps = 3/106 (2%) Strand = Plus / Plus Query: 17 gtatttcattgctacaagcatgggttattgtaaa--ataacacatgtcatttggatactt 74 |||||||||||||| || |||| |||||| ||| |||| |||||| ||||||||| || Sbjct: 63 gtatttcattgctataaatatggattattgaaaagaataagacatgttatttggatattt 122 Query: 75 ctcttcaactccgaagtattttt-atacgatacaaatagttgaagt 119 | ||||||| || |||||||||| || ||||| |||||||||||| Sbjct: 123 cccttcaaccccaaagtattttttatttgatacgaatagttgaagt 168
>gb|AY590871.1| Nuphar advena petB-petD intergenic spacer, partial sequence; and PetD (petD) gene, intron and partial cds; chloroplast Length = 856 Score = 91.7 bits (46), Expect = 2e-15 Identities = 73/82 (89%) Strand = Plus / Plus Query: 271 aggataggctggttcacttgaggagaatatcttctatgatcataccgcaaccatgtcatc 330 ||||||||||||||| |||||||||||| ||||||||||||| ||| || |||||||| Sbjct: 308 aggataggctggttcccttgaggagaatctcttctatgatcagacctgaatcatgtcatg 367 Query: 331 catgaacaggctccgtaagatc 352 |||||| ||||| ||||||||| Sbjct: 368 catgaataggcttcgtaagatc 389 Score = 71.9 bits (36), Expect = 2e-09 Identities = 45/48 (93%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatttggccatgcagata 190 ||||||||||||||||||||||||| |||||||| | ||||||||||| Sbjct: 189 ggattatgggagtgtgtgacttgaactattgattggtccatgcagata 236 Score = 61.9 bits (31), Expect = 2e-06 Identities = 89/106 (83%), Gaps = 3/106 (2%) Strand = Plus / Plus Query: 17 gtatttcattgctacaagcatgggttattgtaaa--ataacacatgtcatttggatactt 74 |||||||||||||| || |||| |||||| ||| |||| |||||| ||||||||| || Sbjct: 63 gtatttcattgctataaatatggattattgaaaagaataagacatgttatttggatattt 122 Query: 75 ctcttcaactccgaagtattttt-atacgatacaaatagttgaagt 119 | ||||||| || |||||||||| || ||||| |||||||||||| Sbjct: 123 cccttcaaccccaaagtattttttatttgatacgaatagttgaagt 168
>gb|AY590840.1| Acorus calamus petB-petD intergenic spacer, partial sequence; and PetD (petD) gene, intron and partial cds; chloroplast Length = 935 Score = 91.7 bits (46), Expect = 2e-15 Identities = 76/86 (88%) Strand = Plus / Plus Query: 274 ataggctggttcacttgaggagaatatcttctatgatcataccgcaaccatgtcatccat 333 |||||| ||||| |||||||||||| | ||||||||||||||| || ||||| || ||| Sbjct: 319 ataggccggttcgcttgaggagaatcttttctatgatcatacctgaatcatgtgatgcat 378 Query: 334 gaacaggctccgtaagatcccataga 359 ||||||||||||||||||||| |||| Sbjct: 379 gaacaggctccgtaagatcccgtaga 404 Score = 91.7 bits (46), Expect = 2e-15 Identities = 82/94 (87%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatttggccatgcagataaagaattggatc 202 ||||||||||||||||||||||||| |||||||| |||| |||||||| |||||| ||| Sbjct: 186 ggattatgggagtgtgtgacttgaactattgattgggccgtgcagatatagaattttatc 245 Query: 203 tgccacattagaattcacaaccaaaggtgtctcc 236 |||||||| |||||| |||| || |||||||| Sbjct: 246 cgccacattggaattccgaacccaatgtgtctcc 279
>emb|AJ879453.1| Acorus calamus chloroplast, complete genome Length = 153821 Score = 91.7 bits (46), Expect = 2e-15 Identities = 76/86 (88%) Strand = Plus / Plus Query: 274 ataggctggttcacttgaggagaatatcttctatgatcataccgcaaccatgtcatccat 333 |||||| ||||| |||||||||||| | ||||||||||||||| || ||||| || ||| Sbjct: 76408 ataggccggttcgcttgaggagaatcttttctatgatcatacctgaatcatgtgatgcat 76467 Query: 334 gaacaggctccgtaagatcccataga 359 ||||||||||||||||||||| |||| Sbjct: 76468 gaacaggctccgtaagatcccgtaga 76493 Score = 91.7 bits (46), Expect = 2e-15 Identities = 82/94 (87%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatttggccatgcagataaagaattggatc 202 ||||||||||||||||||||||||| |||||||| |||| |||||||| |||||| ||| Sbjct: 76275 ggattatgggagtgtgtgacttgaactattgattgggccgtgcagatatagaattttatc 76334 Query: 203 tgccacattagaattcacaaccaaaggtgtctcc 236 |||||||| |||||| |||| || |||||||| Sbjct: 76335 cgccacattggaattccgaacccaatgtgtctcc 76368
>gb|AY590859.1| Saururus chinensis petB-petD intergenic spacer, partial sequence; and PetD (petD) gene, intron and partial cds; chloroplast Length = 952 Score = 89.7 bits (45), Expect = 8e-15 Identities = 81/93 (87%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatttggccatgcagataaagaattggatc 202 ||||||||||||||||||||||||| |||||||| ||| |||||||| | ||| |||| Sbjct: 193 ggattatgggagtgtgtgacttgaactattgattgagccgtgcagatatatgatttgatc 252 Query: 203 tgccacattagaattcacaaccaaaggtgtctc 235 |||||||| ||||||| ||||||| ||||||| Sbjct: 253 cgccacattggaattcaaaaccaaatgtgtctc 285 Score = 77.8 bits (39), Expect = 3e-11 Identities = 69/79 (87%) Strand = Plus / Plus Query: 275 taggctggttcacttgaggagaatatcttctatgatcataccgcaaccatgtcatccatg 334 ||||| ||||| |||||||||||| | ||||||||||||||| || ||||| | |||| Sbjct: 325 taggccggttcgcttgaggagaatcttttctatgatcataccagaatcatgttgtgcatg 384 Query: 335 aacaggctccgtaagatcc 353 ||||||||||||||||||| Sbjct: 385 aacaggctccgtaagatcc 403 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 422 ttatagtatggaaatgcattcattt 446 |||||||||||||||||||| |||| Sbjct: 458 ttatagtatggaaatgcatttattt 482
>gb|AY590849.1| Calycanthus floridus petB-petD intergenic spacer, partial sequence; and PetD (petD) gene, intron and partial cds; chloroplast Length = 916 Score = 89.7 bits (45), Expect = 8e-15 Identities = 81/93 (87%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatttggccatgcagataaagaattggatc 202 ||||||||||||||||||||||||| |||||||| |||| |||||||| | ||| ||| Sbjct: 194 ggattatgggagtgtgtgacttgaactattgattgggccgtgcagatatatgattttatc 253 Query: 203 tgccacattagaattcacaaccaaaggtgtctc 235 |||||||| |||||||||||||| ||||||| Sbjct: 254 cgccacattgaaattcacaaccaaatgtgtctc 286 Score = 54.0 bits (27), Expect = 4e-04 Identities = 70/83 (84%), Gaps = 1/83 (1%) Strand = Plus / Plus Query: 271 aggataggctggttcacttgaggagaatatcttctatgatcataccgcaaccatgtcatc 330 ||||||||||||||| || |||||||| | ||||||||||| |||| | ||||| | Sbjct: 318 aggataggctggttcgttttaggagaatcttttctatgatcagaccg-actcatgttgtg 376 Query: 331 catgaacaggctccgtaagatcc 353 ||||||| ||||||||||||||| Sbjct: 377 catgaacgggctccgtaagatcc 399 Score = 54.0 bits (27), Expect = 4e-04 Identities = 60/70 (85%), Gaps = 2/70 (2%) Strand = Plus / Plus Query: 17 gtatttcattgctacaagcatgggttattgtaaa--ataacacatgtcatttggatactt 74 ||||||||||||||||| |||| |||||| ||| |||| |||||| |||||||| || Sbjct: 59 gtatttcattgctacaaatatggattattgaaaagaataagacatgttgtttggatattt 118 Query: 75 ctcttcaact 84 |||||||||| Sbjct: 119 ctcttcaact 128 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 426 agtatggaaatgcattcattttctttgcatcgat 459 ||||||||||||||||||||| || ||||||||| Sbjct: 453 agtatggaaatgcattcatttcctctgcatcgat 486
>gb|AY590833.1| Trochodendron aralioides petB-petD intergenic spacer, partial sequence; and PetD (petD) gene, intron and partial cds; chloroplast Length = 926 Score = 89.7 bits (45), Expect = 8e-15 Identities = 81/93 (87%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatttggccatgcagataaagaattggatc 202 ||||||||||||||||||||||||| |||| ||| |||| |||||||| | ||| ||| Sbjct: 200 ggattatgggagtgtgtgacttgaactattcattgggccgtgcagatatatgattttatc 259 Query: 203 tgccacattagaattcacaaccaaaggtgtctc 235 |||||||| ||||||||||||||| ||||||| Sbjct: 260 cgccacattggaattcacaaccaaatgtgtctc 292 Score = 77.8 bits (39), Expect = 3e-11 Identities = 72/83 (86%) Strand = Plus / Plus Query: 271 aggataggctggttcacttgaggagaatatcttctatgatcataccgcaaccatgtcatc 330 ||||||||||||||| |||||||||||| | ||||||||||| ||| | |||||| | Sbjct: 323 aggataggctggttcgcttgaggagaatcttttctatgatcagacccggatcatgtcgtg 382 Query: 331 catgaacaggctccgtaagatcc 353 |||||| |||||||||||||||| Sbjct: 383 catgaataggctccgtaagatcc 405 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 424 atagtatggaaatgcattcattttctttgcatcga 458 ||||||||||||||||||||||| || |||||||| Sbjct: 463 atagtatggaaatgcattcatttcctctgcatcga 497
>emb|AJ428413.1|CFE428413 Calycanthus fertilis var. ferax complete chloroplast genome Length = 153337 Score = 89.7 bits (45), Expect = 8e-15 Identities = 81/93 (87%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatttggccatgcagataaagaattggatc 202 ||||||||||||||||||||||||| |||||||| |||| |||||||| | ||| ||| Sbjct: 77792 ggattatgggagtgtgtgacttgaactattgattgggccgtgcagatatatgattttatc 77851 Query: 203 tgccacattagaattcacaaccaaaggtgtctc 235 |||||||| |||||||||||||| ||||||| Sbjct: 77852 cgccacattgaaattcacaaccaaatgtgtctc 77884 Score = 54.0 bits (27), Expect = 4e-04 Identities = 70/83 (84%), Gaps = 1/83 (1%) Strand = Plus / Plus Query: 271 aggataggctggttcacttgaggagaatatcttctatgatcataccgcaaccatgtcatc 330 ||||||||||||||| || |||||||| | ||||||||||| |||| | ||||| | Sbjct: 77916 aggataggctggttcgttttaggagaatcttttctatgatcagaccg-actcatgttgtg 77974 Query: 331 catgaacaggctccgtaagatcc 353 ||||||| ||||||||||||||| Sbjct: 77975 catgaacgggctccgtaagatcc 77997 Score = 54.0 bits (27), Expect = 4e-04 Identities = 60/70 (85%), Gaps = 2/70 (2%) Strand = Plus / Plus Query: 17 gtatttcattgctacaagcatgggttattgtaaa--ataacacatgtcatttggatactt 74 ||||||||||||||||| |||| |||||| ||| |||| |||||| |||||||| || Sbjct: 77657 gtatttcattgctacaaatatggattattgaaaagaataagacatgttgtttggatattt 77716 Query: 75 ctcttcaact 84 |||||||||| Sbjct: 77717 ctcttcaact 77726 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 426 agtatggaaatgcattcattttctttgcatcgat 459 ||||||||||||||||||||| || ||||||||| Sbjct: 78051 agtatggaaatgcattcatttcctctgcatcgat 78084
>gb|AY590876.1| Amborella trichopoda petB-petD intergenic spacer, partial sequence; and PetD (petD) gene, intron and partial cds; chloroplast Length = 971 Score = 85.7 bits (43), Expect = 1e-13 Identities = 73/83 (87%) Strand = Plus / Plus Query: 271 aggataggctggttcacttgaggagaatatcttctatgatcataccgcaaccatgtcatc 330 |||| |||||||||| |||||||||||||| ||||||||||| | | || |||||||| Sbjct: 344 aggacaggctggttcgcttgaggagaatattttctatgatcaaagccgaatcatgtcatg 403 Query: 331 catgaacaggctccgtaagatcc 353 ||||| ||||||||||||||||| Sbjct: 404 catgagcaggctccgtaagatcc 426 Score = 83.8 bits (42), Expect = 5e-13 Identities = 83/94 (88%), Gaps = 2/94 (2%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatttggccatgcagata-aagaattggat 201 ||||||||||||||| ||||||||| |||||||| |||| |||||||| | ||||| || Sbjct: 220 ggattatgggagtgtttgacttgaactattgattgggccgtgcagatatatgaatt-tat 278 Query: 202 ctgccacattagaattcacaaccaaaggtgtctc 235 |||||||||| |||||||||||||| ||||||| Sbjct: 279 ctgccacattgaaattcacaaccaaatgtgtctc 312 Score = 48.1 bits (24), Expect = 0.027 Identities = 24/24 (100%) Strand = Plus / Plus Query: 423 tatagtatggaaatgcattcattt 446 |||||||||||||||||||||||| Sbjct: 495 tatagtatggaaatgcattcattt 518 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Plus Query: 64 tttggatacttctcttcaactccgaagtatt 94 |||||||| |||||||||||||| ||||||| Sbjct: 138 tttggatatttctcttcaactcctaagtatt 168
>gb|AY590836.1| Nelumbo nucifera petB-petD intergenic spacer, partial sequence; and PetD (petD) gene, intron and partial cds; chloroplast Length = 929 Score = 85.7 bits (43), Expect = 1e-13 Identities = 73/83 (87%) Strand = Plus / Plus Query: 271 aggataggctggttcacttgaggagaatatcttctatgatcataccgcaaccatgtcatc 330 ||||||||||||||| |||||||||||| | ||||||||||| ||| || ||||| | Sbjct: 311 aggataggctggttcgcttgaggagaattttttctatgatcagacccgaatcatgttgta 370 Query: 331 catgaacaggctccgtaagatcc 353 ||||||||||||||||||||||| Sbjct: 371 catgaacaggctccgtaagatcc 393 Score = 81.8 bits (41), Expect = 2e-12 Identities = 80/93 (86%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatttggccatgcagataaagaattggatc 202 ||||||||||||||||||||||||| |||||||| ||| |||||||| ||| ||| Sbjct: 188 ggattatgggagtgtgtgacttgaactattgattgagccgtgcagatatgtgattttatc 247 Query: 203 tgccacattagaattcacaaccaaaggtgtctc 235 |||||||| ||||||||||||||| ||||||| Sbjct: 248 cgccacattggaattcacaaccaaatgtgtctc 280 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 424 atagtatggaaatgcattcattttctttgcatcgat 459 ||||||||||||||||||||||| || ||||||||| Sbjct: 460 atagtatggaaatgcattcatttcctctgcatcgat 495 Score = 52.0 bits (26), Expect = 0.002 Identities = 63/73 (86%), Gaps = 3/73 (4%) Strand = Plus / Plus Query: 17 gtatttcattgctacaagcatgggttattgtaa--aataacacatgtcatttggatactt 74 ||||||||||||||||| |||| |||||| || ||||| |||||| ||||||||| || Sbjct: 59 gtatttcattgctacaaatatggattattgaaaagaataagacatgt-atttggatattt 117 Query: 75 ctcttcaactccg 87 | ||||||||||| Sbjct: 118 cccttcaactccg 130
>gb|AY590831.1| Aextoxicon punctatum petB-petD intergenic spacer, partial sequence; and PetD (petD) gene, intron and partial cds; chloroplast Length = 928 Score = 85.7 bits (43), Expect = 1e-13 Identities = 73/83 (87%) Strand = Plus / Plus Query: 271 aggataggctggttcacttgaggagaatatcttctatgatcataccgcaaccatgtcatc 330 ||||||||||||||| ||||| |||||| | ||||||||||| ||| || |||||| | Sbjct: 316 aggataggctggttcgcttgaagagaatcttttctatgatcagacccgaagcatgtcgtg 375 Query: 331 catgaacaggctccgtaagatcc 353 ||||||||||||||||||||||| Sbjct: 376 catgaacaggctccgtaagatcc 398 Score = 71.9 bits (36), Expect = 2e-09 Identities = 45/48 (93%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatttggccatgcagata 190 ||||||||||||||||||||||||| |||||||| |||| |||||||| Sbjct: 189 ggattatgggagtgtgtgacttgaactattgattgggccgtgcagata 236 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 424 atagtatggaaatgcattcattttctttgcatcga 458 ||||||||||||||||||||||| || |||||||| Sbjct: 456 atagtatggaaatgcattcatttcctctgcatcga 490 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 200 atctgccacattagaattcacaaccaaaggtgtct 234 |||||||||||| ||||||||||||||| |||||| Sbjct: 250 atctgccacattggaattcacaaccaaatgtgtct 284 Score = 52.0 bits (26), Expect = 0.002 Identities = 60/69 (86%), Gaps = 3/69 (4%) Strand = Plus / Plus Query: 17 gtatttcattgctacaagcatgggttattgtaa--aataacacatgtcatttggatactt 74 |||||||||||||||||| |||| |||||| || ||||| |||||| ||||||||| || Sbjct: 59 gtatttcattgctacaagtatggattattgaaaagaataagacatgt-atttggatattt 117 Query: 75 ctcttcaac 83 | ||||||| Sbjct: 118 cccttcaac 126
>emb|AJ506156.2|ATR506156 Amborella trichopoda chloroplast genomic DNA, complete sequence Length = 162686 Score = 85.7 bits (43), Expect = 1e-13 Identities = 73/83 (87%) Strand = Plus / Plus Query: 271 aggataggctggttcacttgaggagaatatcttctatgatcataccgcaaccatgtcatc 330 |||| |||||||||| |||||||||||||| ||||||||||| | | || |||||||| Sbjct: 83235 aggacaggctggttcgcttgaggagaatattttctatgatcaaagccgaatcatgtcatg 83294 Query: 331 catgaacaggctccgtaagatcc 353 ||||| ||||||||||||||||| Sbjct: 83295 catgagcaggctccgtaagatcc 83317 Score = 83.8 bits (42), Expect = 5e-13 Identities = 83/94 (88%), Gaps = 2/94 (2%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatttggccatgcagata-aagaattggat 201 ||||||||||||||| ||||||||| |||||||| |||| |||||||| | ||||| || Sbjct: 83111 ggattatgggagtgtttgacttgaactattgattgggccgtgcagatatatgaatt-tat 83169 Query: 202 ctgccacattagaattcacaaccaaaggtgtctc 235 |||||||||| |||||||||||||| ||||||| Sbjct: 83170 ctgccacattgaaattcacaaccaaatgtgtctc 83203 Score = 48.1 bits (24), Expect = 0.027 Identities = 24/24 (100%) Strand = Plus / Plus Query: 423 tatagtatggaaatgcattcattt 446 |||||||||||||||||||||||| Sbjct: 83386 tatagtatggaaatgcattcattt 83409 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Plus Query: 64 tttggatacttctcttcaactccgaagtatt 94 |||||||| |||||||||||||| ||||||| Sbjct: 83029 tttggatatttctcttcaactcctaagtatt 83059
>emb|AL662967.2|OSJN00166 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0034E24, complete sequence Length = 152220 Score = 85.7 bits (43), Expect = 1e-13 Identities = 68/75 (90%), Gaps = 1/75 (1%) Strand = Plus / Plus Query: 129 gaaagaaaa-aaggcggattatgggagtgtgtgacttgaattattgatttggccatgcag 187 ||||||||| ||||||||||| ||||||||| |||||||||||||||||| ||| ||||| Sbjct: 53035 gaaagaaaataaggcggattacgggagtgtgcgacttgaattattgatttagccttgcag 53094 Query: 188 ataaagaattggatc 202 ||| ||| ||||||| Sbjct: 53095 atagagagttggatc 53109
>gb|AY780259.1| Eucalyptus globulus subsp. globulus chloroplast, complete genome Length = 160286 Score = 85.7 bits (43), Expect = 1e-13 Identities = 83/96 (86%), Gaps = 4/96 (4%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatttggccatgcagataaagaattg---- 198 ||||||||||||||||||||||||| |||||||| |||| |||||||||| | || Sbjct: 81223 ggattatgggagtgtgtgacttgaactattgattgggccgtgcagataaatatatgcctt 81282 Query: 199 gatctgccacattagaattcacaaccaaaggtgtct 234 |||||||||||| ||||||||||||||| |||||| Sbjct: 81283 tatctgccacattggaattcacaaccaaatgtgtct 81318 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 331 catgaacaggctccgtaagatcc 353 ||||||||||||||||||||||| Sbjct: 81418 catgaacaggctccgtaagatcc 81440 Score = 46.1 bits (23), Expect = 0.11 Identities = 60/70 (85%), Gaps = 3/70 (4%) Strand = Plus / Plus Query: 17 gtatttcattgctacaagcatgggttattgtaa--aataacacatgtcatttggatactt 74 ||||||||||||||||| |||| |||||| || ||||| |||||| ||||||||| || Sbjct: 81093 gtatttcattgctacaaatatggattattgaaaagaataagacatgt-atttggatattt 81151 Query: 75 ctcttcaact 84 | |||||||| Sbjct: 81152 cccttcaact 81161
>gb|AY590873.1| Nymphaea odorata petB-petD intergenic spacer, partial sequence; and PetD (petD) gene, intron and partial cds; chloroplast Length = 862 Score = 83.8 bits (42), Expect = 5e-13 Identities = 72/82 (87%) Strand = Plus / Plus Query: 271 aggataggctggttcacttgaggagaatatcttctatgatcataccgcaaccatgtcatc 330 ||||||||||||||| |||||||||||| | ||||||||||| ||| || |||||||| Sbjct: 320 aggataggctggttcccttgaggagaatcttttctatgatcagacccgaatcatgtcatg 379 Query: 331 catgaacaggctccgtaagatc 352 |||||| ||||| ||||||||| Sbjct: 380 catgaataggcttcgtaagatc 401 Score = 71.9 bits (36), Expect = 2e-09 Identities = 80/93 (86%), Gaps = 5/93 (5%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatttggccatgcagataaagaattggatc 202 ||||||||||||||||||||||||| |||||||| | ||||||||||| | || ||| Sbjct: 200 ggattatgggagtgtgtgacttgaactattgattggtccatgcagatata---tt--atc 254 Query: 203 tgccacattagaattcacaaccaaaggtgtctc 235 ||||||||| ||||||| || |||| ||||||| Sbjct: 255 tgccacattggaattcataaacaaatgtgtctc 287 Score = 61.9 bits (31), Expect = 2e-06 Identities = 89/106 (83%), Gaps = 3/106 (2%) Strand = Plus / Plus Query: 17 gtatttcattgctacaagcatgggttattgtaaa--ataacacatgtcatttggatactt 74 |||||||||||||| || |||| |||||| ||| |||| |||||| ||||||||| || Sbjct: 74 gtatttcattgctataaatatggattattgaaaagaataagacatgttatttggatattt 133 Query: 75 ctcttcaactccgaagtat-ttttatacgatacaaatagttgaagt 119 | ||||||| |||||||| |||||| ||||| |||||||||||| Sbjct: 134 cccttcaaccacgaagtattttttatttgatacgaatagttgaagt 179
>gb|AY590870.1| Victoria cruziana petB-petD intergenic spacer, partial sequence; and PetD (petD) gene, intron and partial cds; chloroplast Length = 849 Score = 83.8 bits (42), Expect = 5e-13 Identities = 72/82 (87%) Strand = Plus / Plus Query: 271 aggataggctggttcacttgaggagaatatcttctatgatcataccgcaaccatgtcatc 330 ||||||||||||||| |||||||||||| | ||||||||||| ||| || |||||||| Sbjct: 308 aggataggctggttcccttgaggagaatcttttctatgatcagacccgaatcatgtcatg 367 Query: 331 catgaacaggctccgtaagatc 352 |||||| ||||| ||||||||| Sbjct: 368 catgaataggcttcgtaagatc 389 Score = 71.9 bits (36), Expect = 2e-09 Identities = 80/93 (86%), Gaps = 5/93 (5%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatttggccatgcagataaagaattggatc 202 ||||||||||||||||||||||||| |||||||| | ||||||||||| | || ||| Sbjct: 188 ggattatgggagtgtgtgacttgaactattgattggtccatgcagatata---tt--atc 242 Query: 203 tgccacattagaattcacaaccaaaggtgtctc 235 ||||||||| ||||||| || |||| ||||||| Sbjct: 243 tgccacattggaattcataaacaaatgtgtctc 275 Score = 61.9 bits (31), Expect = 2e-06 Identities = 89/106 (83%), Gaps = 3/106 (2%) Strand = Plus / Plus Query: 17 gtatttcattgctacaagcatgggttattgtaaa--ataacacatgtcatttggatactt 74 |||||||||||||| || |||| |||||| ||| |||| |||||| ||||||||| || Sbjct: 62 gtatttcattgctataaatatggattattgaaaagaataagacatgttatttggatattt 121 Query: 75 ctcttcaactccgaagtat-ttttatacgatacaaatagttgaagt 119 | ||||||| |||||||| |||||| ||||| |||||||||||| Sbjct: 122 cccttcaaccacgaagtattttttatttgatacgaatagttgaagt 167
>emb|AJ627251.1| Nymphaea alba chloroplast, complete genome Length = 159930 Score = 83.8 bits (42), Expect = 5e-13 Identities = 72/82 (87%) Strand = Plus / Plus Query: 271 aggataggctggttcacttgaggagaatatcttctatgatcataccgcaaccatgtcatc 330 ||||||||||||||| |||||||||||| | ||||||||||| ||| || |||||||| Sbjct: 82379 aggataggctggttcccttgaggagaatcttttctatgatcagacccgaatcatgtcatg 82438 Query: 331 catgaacaggctccgtaagatc 352 |||||| ||||| ||||||||| Sbjct: 82439 catgaataggcttcgtaagatc 82460 Score = 71.9 bits (36), Expect = 2e-09 Identities = 80/93 (86%), Gaps = 5/93 (5%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatttggccatgcagataaagaattggatc 202 ||||||||||||||||||||||||| |||||||| | ||||||||||| | || ||| Sbjct: 82260 ggattatgggagtgtgtgacttgaactattgattggtccatgcagatata---tt--atc 82314 Query: 203 tgccacattagaattcacaaccaaaggtgtctc 235 ||||||||| ||||||| || |||| ||||||| Sbjct: 82315 tgccacattggaattcataaacaaatgtgtctc 82347 Score = 61.9 bits (31), Expect = 2e-06 Identities = 89/106 (83%), Gaps = 3/106 (2%) Strand = Plus / Plus Query: 17 gtatttcattgctacaagcatgggttattgtaaa--ataacacatgtcatttggatactt 74 |||||||||||||| || |||| |||||| ||| |||| |||||| ||||||||| || Sbjct: 82134 gtatttcattgctataaatatggattattgaaaagaataagacatgttatttggatattt 82193 Query: 75 ctcttcaactccgaagtat-ttttatacgatacaaatagttgaagt 119 | ||||||| |||||||| |||||| ||||| |||||||||||| Sbjct: 82194 cccttcaaccacgaagtattttttatttgatacgaatagttgaagt 82239
>gb|AY590861.1| Saruma henryi petB-petD intergenic spacer, partial sequence; and PetD (petD) gene, intron and partial cds; chloroplast Length = 933 Score = 81.8 bits (41), Expect = 2e-12 Identities = 74/85 (87%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatttggccatgcagataaagaattggatc 202 ||||||||||||||||||||||||| |||||||| |||| |||||||| | ||| ||| Sbjct: 192 ggattatgggagtgtgtgacttgaactattgattgggccgtgcagatatatgattttatc 251 Query: 203 tgccacattagaattcacaaccaaa 227 |||||||| |||||| |||||||| Sbjct: 252 cgccacattggaattcgcaaccaaa 276 Score = 79.8 bits (40), Expect = 8e-12 Identities = 70/80 (87%) Strand = Plus / Plus Query: 274 ataggctggttcacttgaggagaatatcttctatgatcataccgcaaccatgtcatccat 333 ||||||||||| ||||||||||||| | ||||||||||| ||| || ||||| | ||| Sbjct: 320 ataggctggtttacttgaggagaatcttttctatgatcagacccgaatcatgttgtgcat 379 Query: 334 gaacaggctccgtaagatcc 353 |||||||||||||||||||| Sbjct: 380 gaacaggctccgtaagatcc 399 Score = 60.0 bits (30), Expect = 7e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 422 ttatagtatggaaatgcattcattttctttgcatcgat 459 ||||||||||||||||||||||||| || ||||||||| Sbjct: 454 ttatagtatggaaatgcattcatttcctgtgcatcgat 491
>gb|DQ424856.1| Vitis vinifera cultivar Maxxa chloroplast, complete genome Length = 160928 Score = 79.8 bits (40), Expect = 8e-12 Identities = 70/80 (87%) Strand = Plus / Plus Query: 274 ataggctggttcacttgaggagaatatcttctatgatcataccgcaaccatgtcatccat 333 |||||||||||| ||||| |||||| | ||||||||||| ||| || |||||| | ||| Sbjct: 81460 ataggctggttcgcttgaagagaatcttttctatgatcagacccgaatcatgtcgtgcat 81519 Query: 334 gaacaggctccgtaagatcc 353 |||||||||||||||||||| Sbjct: 81520 gaacaggctccgtaagatcc 81539 Score = 79.8 bits (40), Expect = 8e-12 Identities = 79/92 (85%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatttggccatgcagataaagaattggatc 202 ||||||||||||||||||||||||| |||||||| |||| |||||||| | | | ||| Sbjct: 81336 ggattatgggagtgtgtgacttgaactattgattgggccttgcagatatatacctttatc 81395 Query: 203 tgccacattagaattcacaaccaaaggtgtct 234 |||||||| |||||||||||||| |||||| Sbjct: 81396 cgccacattgaaattcacaaccaaatgtgtct 81427 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Plus Query: 426 agtatggaaatgcattcattttctttgcatcga 458 ||||||||||||||||||||| || |||||||| Sbjct: 81608 agtatggaaatgcattcatttcctctgcatcga 81640 Score = 42.1 bits (21), Expect = 1.7 Identities = 61/72 (84%), Gaps = 3/72 (4%) Strand = Plus / Plus Query: 17 gtatttcattgctacaagcatgggttattgtaa--aataacacatgtcatttggatactt 74 ||||||||||||||||| |||| |||||| || ||||| |||||| |||||||| || Sbjct: 81210 gtatttcattgctacaaatatggattattgaaaagaataagacatgt-atttggatcttt 81268 Query: 75 ctcttcaactcc 86 | |||||||||| Sbjct: 81269 cccttcaactcc 81280
>gb|AY228468.1| Pinus Koraiensis chloroplast, complete genome Length = 116866 Score = 79.8 bits (40), Expect = 8e-12 Identities = 46/48 (95%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatttggccatgcagata 190 ||||||||||||||||||||||||| |||||||| ||||||||||||| Sbjct: 54537 ggattatgggagtgtgtgacttgaactattgattaggccatgcagata 54584
>emb|X84648.1|CPSCYTBF P.sitchensis chloroplastic cytochrome bf gene Length = 1500 Score = 79.8 bits (40), Expect = 8e-12 Identities = 46/48 (95%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatttggccatgcagata 190 ||||||||||||||||||||||||| |||||||| ||||||||||||| Sbjct: 198 ggattatgggagtgtgtgacttgaactattgattaggccatgcagata 245
>dbj|D17510.1|PINCPTRPG Pinus thunbergii chloroplast DNA, complete sequence Length = 119707 Score = 79.8 bits (40), Expect = 8e-12 Identities = 46/48 (95%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatttggccatgcagata 190 ||||||||||||||||||||||||| |||||||| ||||||||||||| Sbjct: 56456 ggattatgggagtgtgtgacttgaactattgattaggccatgcagata 56503
>gb|AY590857.1| Piper crocatum petB-petD intergenic spacer, partial sequence; and PetD (petD) gene, intron and partial cds; chloroplast Length = 964 Score = 77.8 bits (39), Expect = 3e-11 Identities = 69/79 (87%) Strand = Plus / Plus Query: 275 taggctggttcacttgaggagaatatcttctatgatcataccgcaaccatgtcatccatg 334 ||||| ||||| |||||||||||| | ||||||||||||||| || ||||| || ||| Sbjct: 329 taggccggttcgcttgaggagaatcttttctatgatcatacccgaatcatgttatgcata 388 Query: 335 aacaggctccgtaagatcc 353 ||||||||||||||||||| Sbjct: 389 aacaggctccgtaagatcc 407 Score = 60.0 bits (30), Expect = 7e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatt 176 ||||||||||||||||||||||||| |||||||| Sbjct: 193 ggattatgggagtgtgtgacttgaactattgatt 226 Score = 44.1 bits (22), Expect = 0.43 Identities = 31/34 (91%) Strand = Plus / Plus Query: 423 tatagtatggaaatgcattcattttctttgcatc 456 ||||||||||||||||||| |||| || |||||| Sbjct: 478 tatagtatggaaatgcatttatttcctgtgcatc 511 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 19 atttcattgctacaagcatgggttattg 46 ||||||||||||||| ||||| |||||| Sbjct: 60 atttcattgctacaaacatggattattg 87
>gb|AY590856.1| Piper ornatum petB-petD intergenic spacer, partial sequence; and PetD (petD) gene, intron and partial cds; chloroplast Length = 960 Score = 77.8 bits (39), Expect = 3e-11 Identities = 69/79 (87%) Strand = Plus / Plus Query: 275 taggctggttcacttgaggagaatatcttctatgatcataccgcaaccatgtcatccatg 334 ||||| ||||| |||||||||||| | ||||||||||||||| || ||||| || ||| Sbjct: 329 taggccggttcgcttgaggagaatcttttctatgatcatacccgaatcatgttatgcata 388 Query: 335 aacaggctccgtaagatcc 353 ||||||||||||||||||| Sbjct: 389 aacaggctccgtaagatcc 407 Score = 60.0 bits (30), Expect = 7e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatt 176 ||||||||||||||||||||||||| |||||||| Sbjct: 193 ggattatgggagtgtgtgacttgaactattgatt 226 Score = 44.1 bits (22), Expect = 0.43 Identities = 31/34 (91%) Strand = Plus / Plus Query: 423 tatagtatggaaatgcattcattttctttgcatc 456 ||||||||||||||||||| |||| || |||||| Sbjct: 478 tatagtatggaaatgcatttatttcctgtgcatc 511 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 19 atttcattgctacaagcatgggttattg 46 ||||||||||||||| ||||| |||||| Sbjct: 60 atttcattgctacaaacatggattattg 87
>gb|AY590855.1| Piper sp. CL2004 petB-petD intergenic spacer, partial sequence; and PetD (petD) gene, intron and partial cds; chloroplast Length = 966 Score = 77.8 bits (39), Expect = 3e-11 Identities = 69/79 (87%) Strand = Plus / Plus Query: 275 taggctggttcacttgaggagaatatcttctatgatcataccgcaaccatgtcatccatg 334 ||||| ||||| |||||||||||| | ||||||||||||||| || ||||| || ||| Sbjct: 330 taggccggttcgcttgaggagaatcttttctatgatcatacccgaatcatgttatgcata 389 Query: 335 aacaggctccgtaagatcc 353 ||||||||||||||||||| Sbjct: 390 aacaggctccgtaagatcc 408 Score = 60.0 bits (30), Expect = 7e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatt 176 ||||||||||||||||||||||||| |||||||| Sbjct: 194 ggattatgggagtgtgtgacttgaactattgatt 227 Score = 44.1 bits (22), Expect = 0.43 Identities = 31/34 (91%) Strand = Plus / Plus Query: 423 tatagtatggaaatgcattcattttctttgcatc 456 ||||||||||||||||||| |||| || |||||| Sbjct: 479 tatagtatggaaatgcatttatttcctgtgcatc 512 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 19 atttcattgctacaagcatgggttattg 46 ||||||||||||||| ||||| |||||| Sbjct: 61 atttcattgctacaaacatggattattg 88
>gb|AY590875.1| Nymphaea nouchali petB-petD intergenic spacer, partial sequence; and PetD (petD) gene, intron and partial cds; chloroplast Length = 858 Score = 75.8 bits (38), Expect = 1e-10 Identities = 71/82 (86%) Strand = Plus / Plus Query: 271 aggataggctggttcacttgaggagaatatcttctatgatcataccgcaaccatgtcatc 330 ||||||||||||||| ||||||||||| | ||||||||||| ||| || |||||||| Sbjct: 321 aggataggctggttcctttgaggagaatcttttctatgatcagacccgaatcatgtcatg 380 Query: 331 catgaacaggctccgtaagatc 352 |||||| ||||| ||||||||| Sbjct: 381 catgaataggcttcgtaagatc 402 Score = 71.9 bits (36), Expect = 2e-09 Identities = 80/93 (86%), Gaps = 5/93 (5%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatttggccatgcagataaagaattggatc 202 ||||||||||||||||||||||||| |||||||| | ||||||||||| | || ||| Sbjct: 201 ggattatgggagtgtgtgacttgaactattgattggtccatgcagatata---tt--atc 255 Query: 203 tgccacattagaattcacaaccaaaggtgtctc 235 ||||||||| ||||||| || |||| ||||||| Sbjct: 256 tgccacattggaattcataaacaaatgtgtctc 288 Score = 56.0 bits (28), Expect = 1e-04 Identities = 70/83 (84%), Gaps = 2/83 (2%) Strand = Plus / Plus Query: 17 gtatttcattgctacaagcatgggttattgtaaa--ataacacatgtcatttggatactt 74 |||||||||||||| || |||| |||||| ||| |||| |||||| ||||||||| || Sbjct: 75 gtatttcattgctataaatatggattattgaaaagaataagacatgttatttggatattt 134 Query: 75 ctcttcaactccgaagtattttt 97 | ||||||| |||||||||||| Sbjct: 135 cccttcaaccacgaagtattttt 157
>gb|AY590874.1| Nymphaea micrantha petB-petD intergenic spacer, partial sequence; and PetD (petD) gene, intron and partial cds; chloroplast Length = 858 Score = 75.8 bits (38), Expect = 1e-10 Identities = 71/82 (86%) Strand = Plus / Plus Query: 271 aggataggctggttcacttgaggagaatatcttctatgatcataccgcaaccatgtcatc 330 ||||||||||||||| ||||||||||| | ||||||||||| ||| || |||||||| Sbjct: 321 aggataggctggttcctttgaggagaatcttttctatgatcagacccgaatcatgtcatg 380 Query: 331 catgaacaggctccgtaagatc 352 |||||| ||||| ||||||||| Sbjct: 381 catgaataggcttcgtaagatc 402 Score = 71.9 bits (36), Expect = 2e-09 Identities = 80/93 (86%), Gaps = 5/93 (5%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatttggccatgcagataaagaattggatc 202 ||||||||||||||||||||||||| |||||||| | ||||||||||| | || ||| Sbjct: 201 ggattatgggagtgtgtgacttgaactattgattggtccatgcagatata---tt--atc 255 Query: 203 tgccacattagaattcacaaccaaaggtgtctc 235 ||||||||| ||||||| || |||| ||||||| Sbjct: 256 tgccacattggaattcataaacaaatgtgtctc 288 Score = 56.0 bits (28), Expect = 1e-04 Identities = 70/83 (84%), Gaps = 2/83 (2%) Strand = Plus / Plus Query: 17 gtatttcattgctacaagcatgggttattgtaaa--ataacacatgtcatttggatactt 74 |||||||||||||| || |||| |||||| ||| |||| |||||| ||||||||| || Sbjct: 75 gtatttcattgctataaatatggattattgaaaagaataagacatgttatttggatattt 134 Query: 75 ctcttcaactccgaagtattttt 97 | ||||||| |||||||||||| Sbjct: 135 cccttcaaccacgaagtattttt 157
>gb|AY590869.1| Brasenia schreberi petB-petD intergenic spacer, partial sequence; and PetD (petD) gene, intron and partial cds; chloroplast Length = 859 Score = 75.8 bits (38), Expect = 1e-10 Identities = 71/82 (86%) Strand = Plus / Plus Query: 271 aggataggctggttcacttgaggagaatatcttctatgatcataccgcaaccatgtcatc 330 ||||||||||||||| |||||||||||| | ||||||||||| ||| || | |||||| Sbjct: 321 aggataggctggttcccttgaggagaatcttttctatgatcagacccgaatcgtgtcatg 380 Query: 331 catgaacaggctccgtaagatc 352 |||||| ||||| ||||||||| Sbjct: 381 catgaataggcttcgtaagatc 402 Score = 63.9 bits (32), Expect = 5e-07 Identities = 79/93 (84%), Gaps = 5/93 (5%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatttggccatgcagataaagaattggatc 202 ||||||||||||||||||||||||| |||||||| | | | ||||||| ||| ||| Sbjct: 202 ggattatgggagtgtgtgacttgaactattgattggtcgacgcagata---tatt--atc 256 Query: 203 tgccacattagaattcacaaccaaaggtgtctc 235 ||||||||||||||||| || |||| ||||||| Sbjct: 257 tgccacattagaattcataaacaaatgtgtctc 289 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 50 aataacacatgtcatttggatacttctcttcaactccgaagtattttt 97 ||||| |||||| ||||||||| ||| ||||||| ||||||||||||| Sbjct: 105 aataatacatgttatttggatatttcccttcaaccccgaagtattttt 152
>gb|DQ383816.1| Lactuca sativa cultivar Salinas chloroplast, complete genome Length = 152772 Score = 73.8 bits (37), Expect = 5e-10 Identities = 136/163 (83%), Gaps = 7/163 (4%) Strand = Plus / Plus Query: 17 gtatttcattgctacaagcatgggttattgtaaa--ataacacatgtcatttggatactt 74 |||||| ||||||||||| |||| |||||| ||| |||| |||||| ||||||||| || Sbjct: 76315 gtattttattgctacaagtatggattattgaaaataataagacatgt-atttggatattt 76373 Query: 75 ctcttcaactccgaagtattttt-atacgatacaaatagttgaagttaattttacgaaag 133 | ||| ||||||| | ||||||| || || | |||||||||||| |||||| |||| | Sbjct: 76374 cccttgaactccgcaatattttttatttgacataaatagttgaagggaattttccgaa-g 76432 Query: 134 aaaaaaggcggattatgggagtgtgtgacttgaattattgatt 176 | |||| | |||||||||||||||||||||||| |||||||| Sbjct: 76433 agaaaatg--gattatgggagtgtgtgacttgaactattgatt 76473 Score = 67.9 bits (34), Expect = 3e-08 Identities = 70/82 (85%) Strand = Plus / Plus Query: 271 aggataggctggttcacttgaggagaatatcttctatgatcataccgcaaccatgtcatc 330 ||||||||||||||| ||| | |||||| | ||||||||||| | | || |||||||| Sbjct: 76559 aggataggctggttcgcttaaagagaatcttttctatgatcagataggaatcatgtcata 76618 Query: 331 catgaacaggctccgtaagatc 352 ||||| |||||||||||||||| Sbjct: 76619 catgagcaggctccgtaagatc 76640
>dbj|AP007232.1| Lactuca sativa chloroplast DNA, complete genome Length = 152765 Score = 73.8 bits (37), Expect = 5e-10 Identities = 136/163 (83%), Gaps = 7/163 (4%) Strand = Plus / Plus Query: 17 gtatttcattgctacaagcatgggttattgtaaa--ataacacatgtcatttggatactt 74 |||||| ||||||||||| |||| |||||| ||| |||| |||||| ||||||||| || Sbjct: 76313 gtattttattgctacaagtatggattattgaaaataataagacatgt-atttggatattt 76371 Query: 75 ctcttcaactccgaagtattttt-atacgatacaaatagttgaagttaattttacgaaag 133 | ||| ||||||| | ||||||| || || | |||||||||||| |||||| |||| | Sbjct: 76372 cccttgaactccgcaatattttttatttgacataaatagttgaagggaattttccgaa-g 76430 Query: 134 aaaaaaggcggattatgggagtgtgtgacttgaattattgatt 176 | |||| | |||||||||||||||||||||||| |||||||| Sbjct: 76431 agaaaatg--gattatgggagtgtgtgacttgaactattgatt 76471 Score = 67.9 bits (34), Expect = 3e-08 Identities = 70/82 (85%) Strand = Plus / Plus Query: 271 aggataggctggttcacttgaggagaatatcttctatgatcataccgcaaccatgtcatc 330 ||||||||||||||| ||| | |||||| | ||||||||||| | | || |||||||| Sbjct: 76557 aggataggctggttcgcttaaagagaatcttttctatgatcagataggaatcatgtcata 76616 Query: 331 catgaacaggctccgtaagatc 352 ||||| |||||||||||||||| Sbjct: 76617 catgagcaggctccgtaagatc 76638
>gb|DQ345959.1| Gossypium hirsutum cultivar coker 310 FR chloroplast, complete genome Length = 160301 Score = 71.9 bits (36), Expect = 2e-09 Identities = 78/92 (84%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatttggccatgcagataaagaattggatc 202 ||||||||||||||||||||||||| |||||||| |||| |||||| | | | ||| Sbjct: 80919 ggattatgggagtgtgtgacttgaactattgattgggccgtgcagaaatatgcctttatc 80978 Query: 203 tgccacattagaattcacaaccaaaggtgtct 234 ||| ||||| ||||||||||||||| |||||| Sbjct: 80979 tgctacattggaattcacaaccaaatgtgtct 81010 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 270 aaggataggctggttcacttgaggagaatatcttctatgatca 312 |||||||||||||||| ||||| |||||| | ||||||||||| Sbjct: 81041 aaggataggctggttcgcttgaagagaatcttttctatgatca 81083
>emb|AJ001024.1|CLPAPETBD Picea abies chloroplast DNA petB and petD genes Length = 4707 Score = 71.9 bits (36), Expect = 2e-09 Identities = 45/48 (93%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatttggccatgcagata 190 |||||||||||| |||||||||||| |||||||| ||||||||||||| Sbjct: 818 ggattatgggagcgtgtgacttgaactattgattaggccatgcagata 865
>gb|DQ231548.1| Brassica rapa subsp. pekinensis chloroplast sequence Length = 153482 Score = 71.9 bits (36), Expect = 2e-09 Identities = 78/92 (84%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatttggccatgcagataaagaattggatc 202 ||||||||||||||||||||||||| ||||||| |||| |||||| | | | | ||| Sbjct: 75568 ggattatgggagtgtgtgacttgaactattgatcgggccgtgcagaaatatgactttatc 75627 Query: 203 tgccacattagaattcacaaccaaaggtgtct 234 ||| ||||| ||||||||||||||| |||||| Sbjct: 75628 tgctacattggaattcacaaccaaatgtgtct 75659 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Plus Query: 272 ggataggctggttcacttgaggagaatatcttctatgatcata 314 |||||||||||||||||||| |||||| | ||||||||||||| Sbjct: 75692 ggataggctggttcacttgaagagaatcttttctatgatcata 75734 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Plus Query: 424 atagtatggaaatgcattcattttctttgcatcga 458 |||||||| |||||||||||||| || |||||||| Sbjct: 75866 atagtatgtaaatgcattcatttcctctgcatcga 75900
>dbj|AP000423.1| Arabidopsis thaliana chloroplast genomic DNA, complete sequence, strain:Columbia Length = 154478 Score = 71.9 bits (36), Expect = 2e-09 Identities = 78/92 (84%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatttggccatgcagataaagaattggatc 202 ||||||||||||||||||||||||| ||||||| |||| |||||| | | | | ||| Sbjct: 76476 ggattatgggagtgtgtgacttgaactattgatcgggccgtgcagaaatattactttatc 76535 Query: 203 tgccacattagaattcacaaccaaaggtgtct 234 ||| ||||| ||||||||||||||| |||||| Sbjct: 76536 tgctacattggaattcacaaccaaatgtgtct 76567 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 272 ggataggctggttcacttgaggagaatatcttctatgatcatacc 316 |||||||||||||||||||| |||||| | |||||||||| |||| Sbjct: 76600 ggataggctggttcacttgaagagaatcttttctatgatcgtacc 76644 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 424 atagtatggaaatgcattcattttctttgcatcga 458 |||||||| ||||||||||||||||| |||||||| Sbjct: 76767 atagtatgtaaatgcattcattttctctgcatcga 76801
>gb|AF153442.1|AF153442 Pisum sativum chloroplast psbB operon, complete sequence Length = 5662 Score = 69.9 bits (35), Expect = 7e-09 Identities = 41/43 (95%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatttggccatgc 185 ||||||||||||||||||||||||| |||||||| |||||||| Sbjct: 4351 ggattatgggagtgtgtgacttgaactattgattgggccatgc 4393 Score = 48.1 bits (24), Expect = 0.027 Identities = 30/32 (93%) Strand = Plus / Plus Query: 424 atagtatggaaatgcattcattttctttgcat 455 ||||||||||||||||||||||| || ||||| Sbjct: 4609 atagtatggaaatgcattcatttcctatgcat 4640
>gb|AY590835.1| Dicentra eximia petB-petD intergenic spacer, partial sequence; and PetD (petD) gene, intron and partial cds; chloroplast Length = 941 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Plus Query: 424 atagtatggaaatgcattcattttctttgcatcgatt 460 ||||||||||||||||||||||| ||||||||||||| Sbjct: 473 atagtatggaaatgcattcatttcctttgcatcgatt 509 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 144 gattatgggagtgtgtgacttgaattattgatt 176 |||||||||||||||||||||||| |||||||| Sbjct: 210 gattatgggagtgtgtgacttgaactattgatt 242
>emb|X07106.1|CHSOPSBO Spinach plastid psbB operon with genes for 10 kD phosphoprotein associated with photosystem II (psbH), apocytochrome b6 and subunit 4 (petD) of cytochrome b6f complex Length = 4336 Score = 65.9 bits (33), Expect = 1e-07 Identities = 42/45 (93%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatttggccatgcag 187 ||||||||||||||||||||||||| |||||||| |||| ||||| Sbjct: 2223 ggattatgggagtgtgtgacttgaactattgattaggccgtgcag 2267 Score = 54.0 bits (27), Expect = 4e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 271 aggataggctggttcacttgaggagaatatcttctatgatcataccgcaaccatgtcatc 330 |||||||| |||||| |||| |||||| | ||||||||||| || || ||||| || Sbjct: 2355 aggataggttggttcgtttgaagagaatctattctatgatcaaccctgaatcatgtgatg 2414 Query: 331 catgaacaggctccgtaagatcc 353 ||||||| ||||||||||||||| Sbjct: 2415 catgaacgggctccgtaagatcc 2437 Score = 48.1 bits (24), Expect = 0.027 Identities = 30/32 (93%) Strand = Plus / Plus Query: 424 atagtatggaaatgcattcattttctttgcat 455 ||||||| ||||||||||||||| |||||||| Sbjct: 2494 atagtattgaaatgcattcatttcctttgcat 2525
>emb|AJ400848.1|SOL400848 Spinacia oleracea complete chloroplast genome Length = 150725 Score = 65.9 bits (33), Expect = 1e-07 Identities = 42/45 (93%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatttggccatgcag 187 ||||||||||||||||||||||||| |||||||| |||| ||||| Sbjct: 75128 ggattatgggagtgtgtgacttgaactattgattaggccgtgcag 75172 Score = 54.0 bits (27), Expect = 4e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 271 aggataggctggttcacttgaggagaatatcttctatgatcataccgcaaccatgtcatc 330 |||||||| |||||| |||| |||||| | ||||||||||| || || ||||| || Sbjct: 75260 aggataggttggttcgtttgaagagaatctattctatgatcaaccctgaatcatgtgatg 75319 Query: 331 catgaacaggctccgtaagatcc 353 ||||||| ||||||||||||||| Sbjct: 75320 catgaacgggctccgtaagatcc 75342 Score = 48.1 bits (24), Expect = 0.027 Identities = 30/32 (93%) Strand = Plus / Plus Query: 424 atagtatggaaatgcattcattttctttgcat 455 ||||||| ||||||||||||||| |||||||| Sbjct: 75399 atagtattgaaatgcattcatttcctttgcat 75430
>gb|AC124152.1| Populus deltoides, complete sequence Length = 2373 Score = 65.9 bits (33), Expect = 1e-07 Identities = 79/93 (84%), Gaps = 1/93 (1%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatttggccatgcagata-aagaattggat 201 ||||||||||||||||||||||| | ||||| ||||||| |||||||| | | || || Sbjct: 1657 ggattatgggagtgtgtgacttggactattgttttggccgtgcagatatatgcctttaat 1716 Query: 202 ctgccacattagaattcacaaccaaaggtgtct 234 |||||||||| |||| ||||||||| |||||| Sbjct: 1717 ctgccacattgtaatttacaaccaaatgtgtct 1749 Score = 50.1 bits (25), Expect = 0.007 Identities = 68/81 (83%), Gaps = 1/81 (1%) Strand = Plus / Plus Query: 273 gataggctggttcacttgaggagaatatcttctatgatcataccgcaaccatgtcatcca 332 ||||||| ||||| |||| |||||| | ||||||||||| ||| ||| |||||| | || Sbjct: 1782 gataggccggttcgtttgaagagaatcttttctatgatcagacc-caatcatgtcgtgca 1840 Query: 333 tgaacaggctccgtaagatcc 353 ||| |||||||||||| |||| Sbjct: 1841 tgagcaggctccgtaaaatcc 1861 Score = 40.1 bits (20), Expect = 6.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 424 atagtatggaaatgcattcattttctttgcat 455 ||||||||||||||||| ||||| || ||||| Sbjct: 1973 atagtatggaaatgcatccatttcctctgcat 2004
>gb|AC174467.2| Medicago truncatula chromosome 7 BAC clone mth2-44j14, complete sequence Length = 127007 Score = 65.9 bits (33), Expect = 1e-07 Identities = 42/45 (93%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatttggccatgcag 187 ||||||||||||||||||||||||| |||||||| |||| ||||| Sbjct: 116933 ggattatgggagtgtgtgacttgaactattgattgggccgtgcag 116977 Score = 40.1 bits (20), Expect = 6.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 424 atagtatggaaatgcattcattttctttgcat 455 |||||||||||||||| |||||| || ||||| Sbjct: 117202 atagtatggaaatgcagtcatttcctatgcat 117233 Score = 40.1 bits (20), Expect = 6.6 Identities = 35/40 (87%) Strand = Plus / Plus Query: 273 gataggctggttcacttgaggagaatatcttctatgatca 312 ||||||| ||||| ||||| |||||| | ||||||||||| Sbjct: 117060 gataggccggttcgcttgaagagaatcttttctatgatca 117099
>gb|AC093544.8| Medicago truncatula chloroplast, complete genome, complete sequence Length = 124033 Score = 65.9 bits (33), Expect = 1e-07 Identities = 42/45 (93%) Strand = Plus / Minus Query: 143 ggattatgggagtgtgtgacttgaattattgatttggccatgcag 187 ||||||||||||||||||||||||| |||||||| |||| ||||| Sbjct: 49883 ggattatgggagtgtgtgacttgaactattgattgggccgtgcag 49839 Score = 44.1 bits (22), Expect = 0.43 Identities = 37/42 (88%) Strand = Plus / Minus Query: 271 aggataggctggttcacttgaggagaatatcttctatgatca 312 ||||||||| ||||| ||||| |||||| | ||||||||||| Sbjct: 49758 aggataggccggttcgcttgaagagaatcttttctatgatca 49717 Score = 40.1 bits (20), Expect = 6.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 424 atagtatggaaatgcattcattttctttgcat 455 |||||||||||||||| |||||| || ||||| Sbjct: 49613 atagtatggaaatgcagtcatttcctatgcat 49582
>gb|AY590878.1| Araucaria araucana petB-petD intergenic spacer, partial sequence; and PetD (petD) gene, intron and partial cds; chloroplast Length = 886 Score = 63.9 bits (32), Expect = 5e-07 Identities = 44/48 (91%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatttggccatgcagata 190 ||||||||||||||||||||||||| ||||| || |||| |||||||| Sbjct: 221 ggattatgggagtgtgtgacttgaactattgcttaggccgtgcagata 268
>emb|AJ970307.1| Cucumis sativus chloroplast complete genome Length = 155293 Score = 63.9 bits (32), Expect = 5e-07 Identities = 44/48 (91%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatttggccatgcagata 190 ||||||||||||||||||||||||| |||||||| |||| || ||||| Sbjct: 78772 ggattatgggagtgtgtgacttgaactattgattgggccgtgaagata 78819 Score = 60.0 bits (30), Expect = 7e-06 Identities = 61/70 (87%), Gaps = 1/70 (1%) Strand = Plus / Plus Query: 17 gtatttcattgctacaagcatgggttattgtaaaataacacatgtcatttggatacttct 76 ||||||||||||| ||| |||| |||||| ||||||| |||||| ||||||||| ||| Sbjct: 78636 gtatttcattgctgcaaatatggattattgaaaaataagacatgt-atttggatatttcc 78694 Query: 77 cttcaactcc 86 |||||||||| Sbjct: 78695 cttcaactcc 78704 Score = 54.0 bits (27), Expect = 4e-04 Identities = 67/79 (84%), Gaps = 1/79 (1%) Strand = Plus / Plus Query: 275 taggctggttcacttgaggagaatatcttctatgatcataccgcaaccatgtcatccatg 334 ||||||||||| ||||| |||||| | ||| ||||||| || | ||||||||| |||| Sbjct: 78901 taggctggttcgcttgaagagaatcttttccatgatcagacttga-ccatgtcatgcatg 78959 Query: 335 aacaggctccgtaagatcc 353 | ||||||||||||||||| Sbjct: 78960 accaggctccgtaagatcc 78978 Score = 40.1 bits (20), Expect = 6.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 424 atagtatggaaatgcattcattttctttgcat 455 |||||||| |||||||||||||| || ||||| Sbjct: 79040 atagtatgaaaatgcattcatttcctctgcat 79071
>gb|DQ119058.1| Cucumis sativus cultivar Baekmibaekdadagi plastid, complete genome Length = 155527 Score = 63.9 bits (32), Expect = 5e-07 Identities = 44/48 (91%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatttggccatgcagata 190 ||||||||||||||||||||||||| |||||||| |||| || ||||| Sbjct: 79003 ggattatgggagtgtgtgacttgaactattgattgggccgtgtagata 79050 Score = 60.0 bits (30), Expect = 7e-06 Identities = 61/70 (87%), Gaps = 1/70 (1%) Strand = Plus / Plus Query: 17 gtatttcattgctacaagcatgggttattgtaaaataacacatgtcatttggatacttct 76 ||||||||||||| ||| |||| |||||| ||||||| |||||| ||||||||| ||| Sbjct: 78868 gtatttcattgctgcaaatatggattattgaaaaataagacatgt-atttggatatttcc 78926 Query: 77 cttcaactcc 86 |||||||||| Sbjct: 78927 cttcaactcc 78936 Score = 54.0 bits (27), Expect = 4e-04 Identities = 67/79 (84%), Gaps = 1/79 (1%) Strand = Plus / Plus Query: 275 taggctggttcacttgaggagaatatcttctatgatcataccgcaaccatgtcatccatg 334 ||||||||||| ||||| |||||| | ||| ||||||| || | ||||||||| |||| Sbjct: 79132 taggctggttcgcttgaagagaatcttttccatgatcagacttga-ccatgtcatgcatg 79190 Query: 335 aacaggctccgtaagatcc 353 | ||||||||||||||||| Sbjct: 79191 accaggctccgtaagatcc 79209 Score = 40.1 bits (20), Expect = 6.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 424 atagtatggaaatgcattcattttctttgcat 455 |||||||| |||||||||||||| || ||||| Sbjct: 79271 atagtatgaaaatgcattcatttcctctgcat 79302
>gb|DQ317523.1| Glycine max cultivar PI 437654 chloroplast, complete genome Length = 152218 Score = 63.9 bits (32), Expect = 5e-07 Identities = 44/48 (91%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatttggccatgcagata 190 ||||||||||||||||||||||||| |||| ||| ||||| ||||||| Sbjct: 75128 ggattatgggagtgtgtgacttgaactatttattgggccacgcagata 75175 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 331 catgaacaggctccgtaagatcc 353 ||||||||||||||||||||||| Sbjct: 75318 catgaacaggctccgtaagatcc 75340
>gb|AY590830.1| Impatiens noli-tangere petB-petD intergenic spacer, partial sequence; and PetD (petD) gene, intron and partial cds; chloroplast Length = 980 Score = 61.9 bits (31), Expect = 2e-06 Identities = 73/87 (83%) Strand = Plus / Plus Query: 273 gataggctggttcacttgaggagaatatcttctatgatcataccgcaaccatgtcatcca 332 ||||| ||||||||||||| |||||| | ||||||||||| | | || ||||| | || Sbjct: 309 gatagactggttcacttgaagagaatcttttctatgatcagatccgaattatgtcgtaca 368 Query: 333 tgaacaggctccgtaagatcccataga 359 ||| ||||||||||||||||| ||||| Sbjct: 369 tgagcaggctccgtaagatccaataga 395 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 144 gattatgggagtgtgtgacttgaattattgatttggccatgcagata 190 ||||||||||||||||||||||| ||||| ||| | || |||||||| Sbjct: 181 gattatgggagtgtgtgacttgacttattaattagtccgtgcagata 227 Score = 40.1 bits (20), Expect = 6.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 424 atagtatggaaatgcattcattttctttgcat 455 |||||||| |||||||||||||| || ||||| Sbjct: 470 atagtatgaaaatgcattcatttcctatgcat 501
>gb|AY590868.1| Cabomba caroliniana petB-petD intergenic spacer, partial sequence; and PetD (petD) gene, intron and partial cds; chloroplast Length = 873 Score = 60.0 bits (30), Expect = 7e-06 Identities = 69/82 (84%) Strand = Plus / Plus Query: 271 aggataggctggttcacttgaggagaatatcttctatgatcataccgcaaccatgtcatc 330 |||||||||||||| |||||||||||| | ||||||||||| | | || | |||||| Sbjct: 322 aggataggctggttaccttgaggagaatcttttctatgatcagatccgaatcgtgtcatg 381 Query: 331 catgaacaggctccgtaagatc 352 |||||| ||||| ||||||||| Sbjct: 382 catgaataggcttcgtaagatc 403 Score = 60.0 bits (30), Expect = 7e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatt 176 ||||||||||||||||||||||||| |||||||| Sbjct: 203 ggattatgggagtgtgtgacttgaactattgatt 236 Score = 48.1 bits (24), Expect = 0.027 Identities = 33/36 (91%) Strand = Plus / Plus Query: 200 atctgccacattagaattcacaaccaaaggtgtctc 235 |||||||||||||||||||| || |||| ||||||| Sbjct: 255 atctgccacattagaattcataaacaaatgtgtctc 290
>gb|AY297619.1| Wollastonia biflora PetB (petB) gene, exon 2 and partial cds; petB-petD intergenic spacer and PetD-like (petD) gene, complete sequence; chloroplast Length = 1002 Score = 60.0 bits (30), Expect = 7e-06 Identities = 69/82 (84%) Strand = Plus / Plus Query: 271 aggataggctggttcacttgaggagaatatcttctatgatcataccgcaaccatgtcatc 330 ||||||||||||||| ||| | |||||| | ||||||||||| | || |||||||| Sbjct: 372 aggataggctggttcgcttaaagagaatcttttctatgatcagatacgaatcatgtcata 431 Query: 331 catgaacaggctccgtaagatc 352 ||||| |||||||||||||||| Sbjct: 432 catgagcaggctccgtaagatc 453 Score = 60.0 bits (30), Expect = 7e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatt 176 ||||||||||||||||||||||||| |||||||| Sbjct: 240 ggattatgggagtgtgtgacttgaactattgatt 273 Score = 48.1 bits (24), Expect = 0.027 Identities = 70/83 (84%), Gaps = 3/83 (3%) Strand = Plus / Plus Query: 17 gtatttcattgctacaagcatgggttattgtaa--aataacacatgtcatttggatactt 74 |||||| ||||||||||| |||| |||||| || ||||| |||||| ||||||||| || Sbjct: 109 gtattttattgctacaagtatggattattgaaaagaataatacatgt-atttggatattt 167 Query: 75 ctcttcaactccgaagtattttt 97 | ||| ||||||| | ||||||| Sbjct: 168 cccttgaactccgcaatattttt 190 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Plus Query: 200 atctgccacattagaattcacaaccaaaggtgtct 234 |||||||||||| |||||||||||||| |||||| Sbjct: 307 atctgccacatttaaattcacaaccaaatgtgtct 341
>gb|AY297618.1| Wamalchitamia aurantiaca PetB (petB) gene, exon 2 and partial cds; petB-petD intergenic spacer, complete sequence; and PetD (petD) gene, exons 1, 2 and partial cds; chloroplast Length = 970 Score = 60.0 bits (30), Expect = 7e-06 Identities = 69/82 (84%) Strand = Plus / Plus Query: 271 aggataggctggttcacttgaggagaatatcttctatgatcataccgcaaccatgtcatc 330 ||||||||||||||| ||| | |||||| | ||||||||||| | || |||||||| Sbjct: 351 aggataggctggttcgcttaaagagaatcttttctatgatcagatacgaatcatgtcata 410 Query: 331 catgaacaggctccgtaagatc 352 ||||| |||||||||||||||| Sbjct: 411 catgagcaggctccgtaagatc 432 Score = 60.0 bits (30), Expect = 7e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatt 176 ||||||||||||||||||||||||| |||||||| Sbjct: 219 ggattatgggagtgtgtgacttgaactattgatt 252 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 200 atctgccacattagaattcacaaccaaaggtgtct 234 |||||||||||| ||||||||||||||| |||||| Sbjct: 286 atctgccacatttgaattcacaaccaaatgtgtct 320
>gb|AY297617.1| Otopappus epaleaceus PetB (petB) gene, exon 2 and partial cds; petB-petD intergenic spacer, complete sequence; and PetD (petD) gene, exons 1, 2 and partial cds; chloroplast Length = 990 Score = 60.0 bits (30), Expect = 7e-06 Identities = 69/82 (84%) Strand = Plus / Plus Query: 271 aggataggctggttcacttgaggagaatatcttctatgatcataccgcaaccatgtcatc 330 ||||||||||||||| ||| | |||||| | ||||||||||| | || |||||||| Sbjct: 355 aggataggctggttcgcttaaagagaatcttttctatgatcagatacgaatcatgtcata 414 Query: 331 catgaacaggctccgtaagatc 352 ||||| |||||||||||||||| Sbjct: 415 catgagcaggctccgtaagatc 436 Score = 60.0 bits (30), Expect = 7e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatt 176 ||||||||||||||||||||||||| |||||||| Sbjct: 223 ggattatgggagtgtgtgacttgaactattgatt 256 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 200 atctgccacattagaattcacaaccaaaggtgtct 234 |||||||||||| ||||||||||||||| |||||| Sbjct: 290 atctgccacatttgaattcacaaccaaatgtgtct 324
>gb|AY297616.1| Jefea pringlei PetB (petB) gene, exon 2 and partial cds; petB-petD intergenic spacer, complete sequence; and PetD (petD) gene, exons 1, 2 and partial cds; chloroplast Length = 966 Score = 60.0 bits (30), Expect = 7e-06 Identities = 69/82 (84%) Strand = Plus / Plus Query: 271 aggataggctggttcacttgaggagaatatcttctatgatcataccgcaaccatgtcatc 330 ||||||||||||||| ||| | |||||| | ||||||||||| | || |||||||| Sbjct: 338 aggataggctggttcgcttaaagagaatcttttctatgatcagatacgaatcatgtcata 397 Query: 331 catgaacaggctccgtaagatc 352 ||||| |||||||||||||||| Sbjct: 398 catgagcaggctccgtaagatc 419 Score = 60.0 bits (30), Expect = 7e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatt 176 ||||||||||||||||||||||||| |||||||| Sbjct: 206 ggattatgggagtgtgtgacttgaactattgatt 239 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 200 atctgccacattagaattcacaaccaaaggtgtct 234 |||||||||||| ||||||||||||||| |||||| Sbjct: 273 atctgccacatttgaattcacaaccaaatgtgtct 307
>gb|AY297615.1| Elaphandra paucipunctata PetB (petB) gene, exon 2 and partial cds; petB-petD intergenic spacer, complete sequence; and PetD (petD) gene, exons 1, 2 and partial cds; chloroplast Length = 989 Score = 60.0 bits (30), Expect = 7e-06 Identities = 69/82 (84%) Strand = Plus / Plus Query: 271 aggataggctggttcacttgaggagaatatcttctatgatcataccgcaaccatgtcatc 330 ||||||||||||||| ||| | |||||| | ||||||||||| | || |||||||| Sbjct: 361 aggataggctggttcgcttaaagagaatcttttctatgatcagatacgaatcatgtcata 420 Query: 331 catgaacaggctccgtaagatc 352 ||||| |||||||||||||||| Sbjct: 421 catgagcaggctccgtaagatc 442 Score = 60.0 bits (30), Expect = 7e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatt 176 ||||||||||||||||||||||||| |||||||| Sbjct: 229 ggattatgggagtgtgtgacttgaactattgatt 262 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 200 atctgccacattagaattcacaaccaaaggtgtct 234 |||||||||||| ||||||||||||||| |||||| Sbjct: 296 atctgccacatttgaattcacaaccaaatgtgtct 330
>gb|AY297614.1| Dimerostemma brasilianum PetB (petB) gene, exon 2 and partial cds; petB-petD intergenic spacer, complete sequence; and PetD (petD) gene, exons 1, 2 and partial cds; chloroplast Length = 1000 Score = 60.0 bits (30), Expect = 7e-06 Identities = 69/82 (84%) Strand = Plus / Plus Query: 271 aggataggctggttcacttgaggagaatatcttctatgatcataccgcaaccatgtcatc 330 ||||||||||||||| ||| | |||||| | ||||||||||| | || |||||||| Sbjct: 368 aggataggctggttcgcttaaagagaatcttttctatgatcagatacgaatcatgtcata 427 Query: 331 catgaacaggctccgtaagatc 352 ||||| |||||||||||||||| Sbjct: 428 catgagcaggctccgtaagatc 449 Score = 60.0 bits (30), Expect = 7e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatt 176 ||||||||||||||||||||||||| |||||||| Sbjct: 236 ggattatgggagtgtgtgacttgaactattgatt 269 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 200 atctgccacattagaattcacaaccaaaggtgtct 234 |||||||||||| ||||||||||||||| |||||| Sbjct: 303 atctgccacatttgaattcacaaccaaatgtgtct 337
>gb|AY297613.1| Dimerostemma annuum PetB (petB) gene, exon 2 and partial cds; petB-petD intergenic spacer, complete sequence; and PetD (petD) gene, exons 1, 2 and partial cds; chloroplast Length = 1003 Score = 60.0 bits (30), Expect = 7e-06 Identities = 69/82 (84%) Strand = Plus / Plus Query: 271 aggataggctggttcacttgaggagaatatcttctatgatcataccgcaaccatgtcatc 330 ||||||||||||||| ||| | |||||| | ||||||||||| | || |||||||| Sbjct: 368 aggataggctggttcgcttaaagagaatcttttctatgatcagatacgaatcatgtcata 427 Query: 331 catgaacaggctccgtaagatc 352 ||||| |||||||||||||||| Sbjct: 428 catgagcaggctccgtaagatc 449 Score = 60.0 bits (30), Expect = 7e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatt 176 ||||||||||||||||||||||||| |||||||| Sbjct: 236 ggattatgggagtgtgtgacttgaactattgatt 269 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 200 atctgccacattagaattcacaaccaaaggtgtct 234 |||||||||||| ||||||||||||||| |||||| Sbjct: 303 atctgccacatttgaattcacaaccaaatgtgtct 337
>gb|AY297612.1| Blainvillea rhomboidea PetB (petB) gene, exon 2 and partial cds; petB-petD intergenic spacer, complete sequence; and PetD (petD) gene, exons 1, 2 and partial cds; chloroplast Length = 966 Score = 60.0 bits (30), Expect = 7e-06 Identities = 69/82 (84%) Strand = Plus / Plus Query: 271 aggataggctggttcacttgaggagaatatcttctatgatcataccgcaaccatgtcatc 330 ||||||||||||||| ||| | ||||| || ||||||||||| | || |||||||| Sbjct: 340 aggataggctggttcgcttaaagagaagattttctatgatcagatacgaatcatgtcata 399 Query: 331 catgaacaggctccgtaagatc 352 ||||| |||||||||||||||| Sbjct: 400 catgagcaggctccgtaagatc 421 Score = 60.0 bits (30), Expect = 7e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatt 176 ||||||||||||||||||||||||| |||||||| Sbjct: 208 ggattatgggagtgtgtgacttgaactattgatt 241 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 200 atctgccacattagaattcacaaccaaaggtgtct 234 |||||||||||| ||||||||||||||| |||||| Sbjct: 275 atctgccacatttgaattcacaaccaaatgtgtct 309
>gb|AY297611.1| Baltimora recta PetB (petB) gene, exon 2 and partial cds; petB-petD intergenic spacer, complete sequence; and PetD (petD) gene, exons 1, 2 and partial cds; chloroplast Length = 993 Score = 60.0 bits (30), Expect = 7e-06 Identities = 69/82 (84%) Strand = Plus / Plus Query: 271 aggataggctggttcacttgaggagaatatcttctatgatcataccgcaaccatgtcatc 330 ||||||||||||||| ||| | |||||| | ||||||||||| | || |||||||| Sbjct: 366 aggataggctggttcgcttaaagagaatcttttctatgatcagatacgaatcatgtcata 425 Query: 331 catgaacaggctccgtaagatc 352 ||||| |||||||||||||||| Sbjct: 426 catgagcaggctccgtaagatc 447 Score = 60.0 bits (30), Expect = 7e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatt 176 ||||||||||||||||||||||||| |||||||| Sbjct: 234 ggattatgggagtgtgtgacttgaactattgatt 267 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 200 atctgccacattagaattcacaaccaaaggtgtct 234 |||||||||||| ||||||||||||||| |||||| Sbjct: 301 atctgccacatttgaattcacaaccaaatgtgtct 335
>gb|AY297610.1| Angelphytum matogrossense PetB (petB) gene, exon 2 and partial cds; petB-petD intergenic spacer, complete sequence; and PetD (petD) gene, exons 1, 2 and partial cds; chloroplast Length = 1001 Score = 60.0 bits (30), Expect = 7e-06 Identities = 69/82 (84%) Strand = Plus / Plus Query: 271 aggataggctggttcacttgaggagaatatcttctatgatcataccgcaaccatgtcatc 330 ||||||||||||||| ||| | |||||| | ||||||||||| | || |||||||| Sbjct: 368 aggataggctggttcgcttaaagagaatcttttctatgatcagatacgaatcatgtcata 427 Query: 331 catgaacaggctccgtaagatc 352 ||||| |||||||||||||||| Sbjct: 428 catgagcaggctccgtaagatc 449 Score = 60.0 bits (30), Expect = 7e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatt 176 ||||||||||||||||||||||||| |||||||| Sbjct: 236 ggattatgggagtgtgtgacttgaactattgatt 269 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 200 atctgccacattagaattcacaaccaaaggtgtct 234 |||||||||||| ||||||||||||||| |||||| Sbjct: 303 atctgccacatttgaattcacaaccaaatgtgtct 337
>gb|AY297609.1| Angelphytum bahiense PetB (petB) gene, exon 2 and partial cds; petB-petD intergenic spacer, complete sequence; and PetD (petD) gene, exons 1, 2 and partial cds; chloroplast Length = 1002 Score = 60.0 bits (30), Expect = 7e-06 Identities = 69/82 (84%) Strand = Plus / Plus Query: 271 aggataggctggttcacttgaggagaatatcttctatgatcataccgcaaccatgtcatc 330 ||||||||||||||| ||| | |||||| | ||||||||||| | || |||||||| Sbjct: 368 aggataggctggttcgcttaaagagaatcttttctatgatcagatacgaatcatgtcata 427 Query: 331 catgaacaggctccgtaagatc 352 ||||| |||||||||||||||| Sbjct: 428 catgagcaggctccgtaagatc 449 Score = 60.0 bits (30), Expect = 7e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatt 176 ||||||||||||||||||||||||| |||||||| Sbjct: 236 ggattatgggagtgtgtgacttgaactattgatt 269 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 200 atctgccacattagaattcacaaccaaaggtgtct 234 |||||||||||| ||||||||||||||| |||||| Sbjct: 303 atctgccacatttgaattcacaaccaaatgtgtct 337
>emb|Z00044.2|CHNTXX Nicotiana tabacum chloroplast genome DNA Length = 155943 Score = 60.0 bits (30), Expect = 7e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatt 176 ||||||||||||||||||||||||| |||||||| Sbjct: 79041 ggattatgggagtgtgtgacttgaactattgatt 79074 Score = 46.1 bits (23), Expect = 0.11 Identities = 68/83 (81%) Strand = Plus / Plus Query: 271 aggataggctggttcacttgaggagaatatcttctatgatcataccgcaaccatgtcatc 330 ||||||||||||||| ||| | |||||| | ||||||||||| | || ||||| | Sbjct: 79158 aggataggctggttcgcttaaagagaatcttttctatgatcaggtccgaatcatgttgta 79217 Query: 331 catgaacaggctccgtaagatcc 353 ||||| ||||||||||||||||| Sbjct: 79218 catgagcaggctccgtaagatcc 79240 Score = 44.1 bits (22), Expect = 0.43 Identities = 28/30 (93%) Strand = Plus / Plus Query: 17 gtatttcattgctacaagcatgggttattg 46 |||||||||||||||||| |||| |||||| Sbjct: 78921 gtatttcattgctacaagtatggattattg 78950 Score = 42.1 bits (21), Expect = 1.7 Identities = 30/33 (90%) Strand = Plus / Plus Query: 202 ctgccacattagaattcacaaccaaaggtgtct 234 ||||||||| ||||||||||||||| |||||| Sbjct: 79094 ctgccacatgggaattcacaaccaaatgtgtct 79126
>gb|DQ383815.1| Helianthus annuus cultivar line HA383 chloroplast, complete genome Length = 151104 Score = 60.0 bits (30), Expect = 7e-06 Identities = 69/82 (84%) Strand = Plus / Plus Query: 271 aggataggctggttcacttgaggagaatatcttctatgatcataccgcaaccatgtcatc 330 ||||||||||||||| ||| | |||||| | ||||||||||| | || |||||||| Sbjct: 76001 aggataggctggttcgcttaaagagaattttttctatgatcagatacgaatcatgtcata 76060 Query: 331 catgaacaggctccgtaagatc 352 ||||| |||||||||||||||| Sbjct: 76061 catgagcaggctccgtaagatc 76082 Score = 60.0 bits (30), Expect = 7e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatt 176 ||||||||||||||||||||||||| |||||||| Sbjct: 75869 ggattatgggagtgtgtgacttgaactattgatt 75902 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 200 atctgccacattagaattcacaaccaaaggtgtct 234 |||||||||||| ||||||||||||||| |||||| Sbjct: 75936 atctgccacatttgaattcacaaccaaatgtgtct 75970
>emb|AJ316582.1|ABE316582 Atropa belladonna complete chloroplast genome, strain Ab5p(kan) Length = 156687 Score = 60.0 bits (30), Expect = 7e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatt 176 ||||||||||||||||||||||||| |||||||| Sbjct: 79278 ggattatgggagtgtgtgacttgaactattgatt 79311 Score = 46.1 bits (23), Expect = 0.11 Identities = 68/83 (81%) Strand = Plus / Plus Query: 271 aggataggctggttcacttgaggagaatatcttctatgatcataccgcaaccatgtcatc 330 ||||||||||||||| ||| | |||||| | ||||||||||| | || ||||| | Sbjct: 79395 aggataggctggttcgcttaaagagaatcttttctatgatcaggtccgaatcatgttgta 79454 Query: 331 catgaacaggctccgtaagatcc 353 ||||| ||||||||||||||||| Sbjct: 79455 catgagcaggctccgtaagatcc 79477 Score = 44.1 bits (22), Expect = 0.43 Identities = 28/30 (93%) Strand = Plus / Plus Query: 17 gtatttcattgctacaagcatgggttattg 46 |||||||||||||||||| |||| |||||| Sbjct: 79158 gtatttcattgctacaagtatggattattg 79187
>gb|DQ386163.1| Solanum tuberosum cultivar Desiree chloroplast, complete genome Length = 155298 Score = 60.0 bits (30), Expect = 7e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatt 176 ||||||||||||||||||||||||| |||||||| Sbjct: 78274 ggattatgggagtgtgtgacttgaactattgatt 78307 Score = 44.1 bits (22), Expect = 0.43 Identities = 31/34 (91%) Strand = Plus / Plus Query: 202 ctgccacattagaattcacaaccaaaggtgtctc 235 ||||||||| ||||||||||||||| ||||||| Sbjct: 78327 ctgccacatgggaattcacaaccaaatgtgtctc 78360 Score = 44.1 bits (22), Expect = 0.43 Identities = 28/30 (93%) Strand = Plus / Plus Query: 17 gtatttcattgctacaagcatgggttattg 46 |||||||||||||||||| |||| |||||| Sbjct: 78154 gtatttcattgctacaagtatggattattg 78183 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Plus Query: 271 aggataggctggttcacttgaggagaatatcttctatgatc 311 ||||||||||||||| ||| | |||||| | |||||||||| Sbjct: 78393 aggataggctggttcgcttaaagagaatcttttctatgatc 78433
>gb|AY005806.1| Transformation vector pJYS54, plastid targeting region Length = 4304 Score = 60.0 bits (30), Expect = 7e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatt 176 ||||||||||||||||||||||||| |||||||| Sbjct: 43 ggattatgggagtgtgtgacttgaactattgatt 76 Score = 46.1 bits (23), Expect = 0.11 Identities = 68/83 (81%) Strand = Plus / Plus Query: 271 aggataggctggttcacttgaggagaatatcttctatgatcataccgcaaccatgtcatc 330 ||||||||||||||| ||| | |||||| | ||||||||||| | || ||||| | Sbjct: 160 aggataggctggttcgcttaaagagaatcttttctatgatcaggtccgaatcatgttgta 219 Query: 331 catgaacaggctccgtaagatcc 353 ||||| ||||||||||||||||| Sbjct: 220 catgagcaggctccgtaagatcc 242 Score = 42.1 bits (21), Expect = 1.7 Identities = 30/33 (90%) Strand = Plus / Plus Query: 202 ctgccacattagaattcacaaccaaaggtgtct 234 ||||||||| ||||||||||||||| |||||| Sbjct: 96 ctgccacatgggaattcacaaccaaatgtgtct 128
>gb|AY582139.1| Panax ginseng chloroplast, complete genome Length = 156318 Score = 60.0 bits (30), Expect = 7e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatt 176 ||||||||||||||||||||||||| |||||||| Sbjct: 78476 ggattatgggagtgtgtgacttgaactattgatt 78509 Score = 54.0 bits (27), Expect = 4e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 271 aggataggctggttcacttgaggagaatatcttctatgatcataccgcaaccatgtcatc 330 ||||||||||||||| ||||| |||||| ||||||||||| | | || | |||| | Sbjct: 78608 aggataggctggttcgcttgaagagaatcctttctatgatcaaatccgaatcgtgtcgta 78667 Query: 331 catgaacaggctccgtaagatcc 353 |||||| |||||||||||||||| Sbjct: 78668 catgaataggctccgtaagatcc 78690 Score = 48.1 bits (24), Expect = 0.027 Identities = 30/32 (93%) Strand = Plus / Plus Query: 424 atagtatggaaatgcattcattttctttgcat 455 ||||||||||||||||||||||| || ||||| Sbjct: 78761 atagtatggaaatgcattcatttcctctgcat 78792 Score = 44.1 bits (22), Expect = 0.43 Identities = 28/30 (93%) Strand = Plus / Plus Query: 17 gtatttcattgctacaagcatgggttattg 46 |||||||||||||||||| |||| |||||| Sbjct: 78360 gtatttcattgctacaagtatggattattg 78389
>emb|AM087200.2| Lycopersicon esculentum complete chloroplast genome Length = 155460 Score = 60.0 bits (30), Expect = 7e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatt 176 ||||||||||||||||||||||||| |||||||| Sbjct: 78429 ggattatgggagtgtgtgacttgaactattgatt 78462 Score = 44.1 bits (22), Expect = 0.43 Identities = 31/34 (91%) Strand = Plus / Plus Query: 202 ctgccacattagaattcacaaccaaaggtgtctc 235 ||||||||| ||||||||||||||| ||||||| Sbjct: 78482 ctgccacatgggaattcacaaccaaatgtgtctc 78515 Score = 44.1 bits (22), Expect = 0.43 Identities = 28/30 (93%) Strand = Plus / Plus Query: 17 gtatttcattgctacaagcatgggttattg 46 |||||||||||||||||| |||| |||||| Sbjct: 78309 gtatttcattgctacaagtatggattattg 78338 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Plus Query: 271 aggataggctggttcacttgaggagaatatcttctatgatc 311 ||||||||||||||| ||| | |||||| | |||||||||| Sbjct: 78547 aggataggctggttcgcttaaagagaatcttttctatgatc 78587
>gb|DQ347959.1| Lycopersicon esculentum cultivar LA3023 chloroplast, complete genome Length = 155461 Score = 60.0 bits (30), Expect = 7e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatt 176 ||||||||||||||||||||||||| |||||||| Sbjct: 78426 ggattatgggagtgtgtgacttgaactattgatt 78459 Score = 44.1 bits (22), Expect = 0.43 Identities = 31/34 (91%) Strand = Plus / Plus Query: 202 ctgccacattagaattcacaaccaaaggtgtctc 235 ||||||||| ||||||||||||||| ||||||| Sbjct: 78479 ctgccacatgggaattcacaaccaaatgtgtctc 78512 Score = 44.1 bits (22), Expect = 0.43 Identities = 28/30 (93%) Strand = Plus / Plus Query: 17 gtatttcattgctacaagcatgggttattg 46 |||||||||||||||||| |||| |||||| Sbjct: 78306 gtatttcattgctacaagtatggattattg 78335 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Plus Query: 271 aggataggctggttcacttgaggagaatatcttctatgatc 311 ||||||||||||||| ||| | |||||| | |||||||||| Sbjct: 78544 aggataggctggttcgcttaaagagaatcttttctatgatc 78584
>gb|DQ347958.1| Solanum bulbocastanum cultivar PT29 chloroplast, complete genome Length = 155371 Score = 60.0 bits (30), Expect = 7e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatt 176 ||||||||||||||||||||||||| |||||||| Sbjct: 78332 ggattatgggagtgtgtgacttgaactattgatt 78365 Score = 44.1 bits (22), Expect = 0.43 Identities = 31/34 (91%) Strand = Plus / Plus Query: 202 ctgccacattagaattcacaaccaaaggtgtctc 235 ||||||||| ||||||||||||||| ||||||| Sbjct: 78385 ctgccacatgggaattcacaaccaaatgtgtctc 78418 Score = 44.1 bits (22), Expect = 0.43 Identities = 28/30 (93%) Strand = Plus / Plus Query: 17 gtatttcattgctacaagcatgggttattg 46 |||||||||||||||||| |||| |||||| Sbjct: 78212 gtatttcattgctacaagtatggattattg 78241 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Plus Query: 271 aggataggctggttcacttgaggagaatatcttctatgatc 311 ||||||||||||||| ||| | |||||| | |||||||||| Sbjct: 78451 aggataggctggttcgcttaaagagaatcttttctatgatc 78491
>dbj|AB237912.1| Nicotiana sylvestris chloroplast DNA, complete sequence Length = 155941 Score = 60.0 bits (30), Expect = 7e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatt 176 ||||||||||||||||||||||||| |||||||| Sbjct: 79039 ggattatgggagtgtgtgacttgaactattgatt 79072 Score = 46.1 bits (23), Expect = 0.11 Identities = 68/83 (81%) Strand = Plus / Plus Query: 271 aggataggctggttcacttgaggagaatatcttctatgatcataccgcaaccatgtcatc 330 ||||||||||||||| ||| | |||||| | ||||||||||| | || ||||| | Sbjct: 79156 aggataggctggttcgcttaaagagaatcttttctatgatcaggtccgaatcatgttgta 79215 Query: 331 catgaacaggctccgtaagatcc 353 ||||| ||||||||||||||||| Sbjct: 79216 catgagcaggctccgtaagatcc 79238 Score = 44.1 bits (22), Expect = 0.43 Identities = 28/30 (93%) Strand = Plus / Plus Query: 17 gtatttcattgctacaagcatgggttattg 46 |||||||||||||||||| |||| |||||| Sbjct: 78919 gtatttcattgctacaagtatggattattg 78948 Score = 42.1 bits (21), Expect = 1.7 Identities = 30/33 (90%) Strand = Plus / Plus Query: 202 ctgccacattagaattcacaaccaaaggtgtct 234 ||||||||| ||||||||||||||| |||||| Sbjct: 79092 ctgccacatgggaattcacaaccaaatgtgtct 79124
>dbj|AB240139.1| Nicotiana tomentosiformis chloroplast DNA, complete sequence Length = 155745 Score = 60.0 bits (30), Expect = 7e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatt 176 ||||||||||||||||||||||||| |||||||| Sbjct: 78801 ggattatgggagtgtgtgacttgaactattgatt 78834 Score = 42.1 bits (21), Expect = 1.7 Identities = 30/33 (90%) Strand = Plus / Plus Query: 202 ctgccacattagaattcacaaccaaaggtgtct 234 ||||||||| ||||||||||||||| |||||| Sbjct: 78854 ctgccacatgggaattcacaaccaaatgtgtct 78886
>gb|DQ231562.1| Solanum tuberosum chloroplast, complete genome Length = 155312 Score = 60.0 bits (30), Expect = 7e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatt 176 ||||||||||||||||||||||||| |||||||| Sbjct: 78285 ggattatgggagtgtgtgacttgaactattgatt 78318 Score = 44.1 bits (22), Expect = 0.43 Identities = 31/34 (91%) Strand = Plus / Plus Query: 202 ctgccacattagaattcacaaccaaaggtgtctc 235 ||||||||| ||||||||||||||| ||||||| Sbjct: 78338 ctgccacatgggaattcacaaccaaatgtgtctc 78371 Score = 44.1 bits (22), Expect = 0.43 Identities = 28/30 (93%) Strand = Plus / Plus Query: 17 gtatttcattgctacaagcatgggttattg 46 |||||||||||||||||| |||| |||||| Sbjct: 78165 gtatttcattgctacaagtatggattattg 78194 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Plus Query: 271 aggataggctggttcacttgaggagaatatcttctatgatc 311 ||||||||||||||| ||| | |||||| | |||||||||| Sbjct: 78404 aggataggctggttcgcttaaagagaatcttttctatgatc 78444
>emb|AJ271079.2|OEL271079 Oenothera elata subsp. hookeri chloroplast plastome I, complete sequence Length = 163935 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgat 175 ||||||||||||||||||||||||| ||||||| Sbjct: 81407 ggattatgggagtgtgtgacttgaactattgat 81439 Score = 42.1 bits (21), Expect = 1.7 Identities = 58/68 (85%), Gaps = 3/68 (4%) Strand = Plus / Plus Query: 19 atttcattgctacaagcatgggttattgtaa--aataacacatgtcatttggatacttct 76 ||||||||||||||| |||| |||||| || ||||| |||||| ||||||||| ||| Sbjct: 81273 atttcattgctacaaatatggattattgaaaagaataagacatgt-atttggatatttcc 81331 Query: 77 cttcaact 84 |||||||| Sbjct: 81332 cttcaact 81339
>gb|AY497340.1| Castanea sativa clone Cmcs1 petD gene, intron, and microsatellite sequence; plastid Length = 240 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 424 atagtatggaaatgcattcattttctttgcat 455 ||||||||||||||||||||||| |||||||| Sbjct: 53 atagtatggaaatgcattcatttcctttgcat 84
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 227 aggtgtctccgcatccaatcaacatgtaagtcccct 262 |||||||||| |||||||||||||||||||||||| Sbjct: 15045960 aggtgtctccatatccaatcaacatgtaagtcccct 15045925
>gb|AC091733.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0048F08, from chromosome 3, complete sequence Length = 155790 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 227 aggtgtctccgcatccaatcaacatgtaagtcccct 262 |||||||||| |||||||||||||||||||||||| Sbjct: 108813 aggtgtctccatatccaatcaacatgtaagtcccct 108848
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 227 aggtgtctccgcatccaatcaacatgtaagtcccct 262 |||||||||| |||||||||||||||||||||||| Sbjct: 15040494 aggtgtctccatatccaatcaacatgtaagtcccct 15040459
>gb|AY660566.1| Huperzia lucidula chloroplast, complete genome Length = 154373 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 143 ggattatgggagtgtgtgacttgaattattgatttggccatgcagata 190 |||| ||||||||||||||||||||||||| | ||||| |||| |||| Sbjct: 10108 ggatcatgggagtgtgtgacttgaattatttaattggctatgcggata 10061
>dbj|AB086179.1| Anthoceros formosae chloroplast DNA, complete genome Length = 161162 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatttggccatgcagata 190 |||||||||||||||||||||||||| | | ||| ||| ||||||||| Sbjct: 95388 ggattatgggagtgtgtgacttgaataactaattaggctatgcagata 95435
>dbj|AP002983.1| Lotus japonicus chloroplast DNA, complete genome Length = 150519 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 424 atagtatggaaatgcattcattttctttgcat 455 |||||||||||||||||||||||||| ||||| Sbjct: 74457 atagtatggaaatgcattcattttctatgcat 74488 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgat 175 |||||||||||||||||||||||| ||||||| Sbjct: 74188 ggattatgggagtgtgtgacttgagctattgat 74220
>gb|AY170189.1| Arabidopsis arenosa isolate A140_7 chloroplast sequence are7 Length = 347 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 424 atagtatggaaatgcattcattttctttgcatcga 458 |||||||| ||||||||||||||||| |||||||| Sbjct: 143 atagtatgtaaatgcattcattttctctgcatcga 177
>gb|AY167529.1| Arabidopsis suecica isolate S361_4 chloroplast sequence sue7 Length = 354 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 424 atagtatggaaatgcattcattttctttgcatcga 458 |||||||| ||||||||||||||||| |||||||| Sbjct: 141 atagtatgtaaatgcattcattttctctgcatcga 175
>gb|AY167528.1| Arabidopsis suecica isolate S354_4 chloroplast sequence sue7 Length = 354 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 424 atagtatggaaatgcattcattttctttgcatcga 458 |||||||| ||||||||||||||||| |||||||| Sbjct: 141 atagtatgtaaatgcattcattttctctgcatcga 175
>gb|AY167527.1| Arabidopsis suecica isolate S330_4 chloroplast sequence sue7 Length = 354 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 424 atagtatggaaatgcattcattttctttgcatcga 458 |||||||| ||||||||||||||||| |||||||| Sbjct: 141 atagtatgtaaatgcattcattttctctgcatcga 175
>gb|AY167526.1| Arabidopsis suecica isolate S300_4 chloroplast sequence sue7 Length = 354 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 424 atagtatggaaatgcattcattttctttgcatcga 458 |||||||| ||||||||||||||||| |||||||| Sbjct: 141 atagtatgtaaatgcattcattttctctgcatcga 175
>gb|AY167525.1| Arabidopsis suecica isolate S261_4 chloroplast sequence sue7 Length = 354 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 424 atagtatggaaatgcattcattttctttgcatcga 458 |||||||| ||||||||||||||||| |||||||| Sbjct: 141 atagtatgtaaatgcattcattttctctgcatcga 175
>gb|AY167524.1| Arabidopsis suecica isolate S240_4 chloroplast sequence sue7 Length = 354 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 424 atagtatggaaatgcattcattttctttgcatcga 458 |||||||| ||||||||||||||||| |||||||| Sbjct: 141 atagtatgtaaatgcattcattttctctgcatcga 175
>gb|AY167523.1| Arabidopsis suecica isolate S223_4 chloroplast sequence sue7 Length = 354 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 424 atagtatggaaatgcattcattttctttgcatcga 458 |||||||| ||||||||||||||||| |||||||| Sbjct: 141 atagtatgtaaatgcattcattttctctgcatcga 175
>gb|AY167522.1| Arabidopsis suecica isolate S170_4 chloroplast sequence sue7 Length = 354 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 424 atagtatggaaatgcattcattttctttgcatcga 458 |||||||| ||||||||||||||||| |||||||| Sbjct: 141 atagtatgtaaatgcattcattttctctgcatcga 175
>gb|AY167521.1| Arabidopsis suecica isolate S150_4 chloroplast sequence sue7 Length = 354 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 424 atagtatggaaatgcattcattttctttgcatcga 458 |||||||| ||||||||||||||||| |||||||| Sbjct: 141 atagtatgtaaatgcattcattttctctgcatcga 175
>gb|AY167520.1| Arabidopsis suecica isolate S140_4 chloroplast sequence sue7 Length = 354 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 424 atagtatggaaatgcattcattttctttgcatcga 458 |||||||| ||||||||||||||||| |||||||| Sbjct: 141 atagtatgtaaatgcattcattttctctgcatcga 175
>gb|AY167519.1| Arabidopsis suecica isolate S130_4 chloroplast sequence sue7 Length = 354 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 424 atagtatggaaatgcattcattttctttgcatcga 458 |||||||| ||||||||||||||||| |||||||| Sbjct: 141 atagtatgtaaatgcattcattttctctgcatcga 175
>gb|AY167518.1| Arabidopsis suecica isolate S110_4 chloroplast sequence sue7 Length = 354 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 424 atagtatggaaatgcattcattttctttgcatcga 458 |||||||| ||||||||||||||||| |||||||| Sbjct: 141 atagtatgtaaatgcattcattttctctgcatcga 175
>gb|AY167517.1| Arabidopsis suecica isolate S90_4 chloroplast sequence sue7 Length = 354 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 424 atagtatggaaatgcattcattttctttgcatcga 458 |||||||| ||||||||||||||||| |||||||| Sbjct: 141 atagtatgtaaatgcattcattttctctgcatcga 175
>gb|AY167516.1| Arabidopsis suecica isolate S70_4 chloroplast sequence sue7 Length = 354 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 424 atagtatggaaatgcattcattttctttgcatcga 458 |||||||| ||||||||||||||||| |||||||| Sbjct: 141 atagtatgtaaatgcattcattttctctgcatcga 175
>gb|AY167515.1| Arabidopsis suecica isolate S60_4 chloroplast sequence sue7 Length = 354 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 424 atagtatggaaatgcattcattttctttgcatcga 458 |||||||| ||||||||||||||||| |||||||| Sbjct: 141 atagtatgtaaatgcattcattttctctgcatcga 175
>gb|AY164005.1| Arabidopsis thaliana isolate 324_7 chloroplast sequence 7 Length = 354 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 424 atagtatggaaatgcattcattttctttgcatcga 458 |||||||| ||||||||||||||||| |||||||| Sbjct: 141 atagtatgtaaatgcattcattttctctgcatcga 175
>gb|AY164004.1| Arabidopsis thaliana isolate 322_7 chloroplast sequence 7 Length = 354 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 424 atagtatggaaatgcattcattttctttgcatcga 458 |||||||| ||||||||||||||||| |||||||| Sbjct: 141 atagtatgtaaatgcattcattttctctgcatcga 175
>gb|AY164003.1| Arabidopsis thaliana isolate 321_7 chloroplast sequence 7 Length = 354 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 424 atagtatggaaatgcattcattttctttgcatcga 458 |||||||| ||||||||||||||||| |||||||| Sbjct: 141 atagtatgtaaatgcattcattttctctgcatcga 175
>gb|AY164002.1| Arabidopsis thaliana isolate 320_7 chloroplast sequence 7 Length = 355 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 424 atagtatggaaatgcattcattttctttgcatcga 458 |||||||| ||||||||||||||||| |||||||| Sbjct: 142 atagtatgtaaatgcattcattttctctgcatcga 176
>gb|AY164001.1| Arabidopsis thaliana isolate 318_7 chloroplast sequence 7 Length = 354 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 424 atagtatggaaatgcattcattttctttgcatcga 458 |||||||| ||||||||||||||||| |||||||| Sbjct: 141 atagtatgtaaatgcattcattttctctgcatcga 175
>gb|AY164000.1| Arabidopsis thaliana isolate 316_7 chloroplast sequence 7 Length = 354 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 424 atagtatggaaatgcattcattttctttgcatcga 458 |||||||| ||||||||||||||||| |||||||| Sbjct: 141 atagtatgtaaatgcattcattttctctgcatcga 175
>gb|AY163999.1| Arabidopsis thaliana isolate 315_7 chloroplast sequence 7 Length = 354 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 424 atagtatggaaatgcattcattttctttgcatcga 458 |||||||| ||||||||||||||||| |||||||| Sbjct: 141 atagtatgtaaatgcattcattttctctgcatcga 175
>gb|AY163998.1| Arabidopsis thaliana isolate 314_7 chloroplast sequence 7 Length = 353 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 424 atagtatggaaatgcattcattttctttgcatcga 458 |||||||| ||||||||||||||||| |||||||| Sbjct: 140 atagtatgtaaatgcattcattttctctgcatcga 174
>gb|AY163997.1| Arabidopsis thaliana isolate 313_7 chloroplast sequence 7 Length = 353 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 424 atagtatggaaatgcattcattttctttgcatcga 458 |||||||| ||||||||||||||||| |||||||| Sbjct: 140 atagtatgtaaatgcattcattttctctgcatcga 174
>gb|AY163996.1| Arabidopsis thaliana isolate 312_7 chloroplast sequence 7 Length = 353 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 424 atagtatggaaatgcattcattttctttgcatcga 458 |||||||| ||||||||||||||||| |||||||| Sbjct: 140 atagtatgtaaatgcattcattttctctgcatcga 174
>gb|AY163995.1| Arabidopsis thaliana isolate 311_7 chloroplast sequence 7 Length = 353 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 424 atagtatggaaatgcattcattttctttgcatcga 458 |||||||| ||||||||||||||||| |||||||| Sbjct: 140 atagtatgtaaatgcattcattttctctgcatcga 174
>gb|AY163994.1| Arabidopsis thaliana isolate 310_7 chloroplast sequence 7 Length = 354 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 424 atagtatggaaatgcattcattttctttgcatcga 458 |||||||| ||||||||||||||||| |||||||| Sbjct: 141 atagtatgtaaatgcattcattttctctgcatcga 175
>gb|AY163993.1| Arabidopsis thaliana isolate 309_7 chloroplast sequence 7 Length = 353 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 424 atagtatggaaatgcattcattttctttgcatcga 458 |||||||| ||||||||||||||||| |||||||| Sbjct: 140 atagtatgtaaatgcattcattttctctgcatcga 174
>gb|AY163992.1| Arabidopsis thaliana isolate 306_7 chloroplast sequence 7 Length = 354 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 424 atagtatggaaatgcattcattttctttgcatcga 458 |||||||| ||||||||||||||||| |||||||| Sbjct: 141 atagtatgtaaatgcattcattttctctgcatcga 175
>gb|AY163991.1| Arabidopsis thaliana isolate 304_7 chloroplast sequence 7 Length = 354 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 424 atagtatggaaatgcattcattttctttgcatcga 458 |||||||| ||||||||||||||||| |||||||| Sbjct: 141 atagtatgtaaatgcattcattttctctgcatcga 175
>gb|AY163990.1| Arabidopsis thaliana isolate 303_7 chloroplast sequence 7 Length = 354 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 424 atagtatggaaatgcattcattttctttgcatcga 458 |||||||| ||||||||||||||||| |||||||| Sbjct: 141 atagtatgtaaatgcattcattttctctgcatcga 175
>gb|AY163989.1| Arabidopsis thaliana isolate 302_7 chloroplast sequence 7 Length = 353 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 424 atagtatggaaatgcattcattttctttgcatcga 458 |||||||| ||||||||||||||||| |||||||| Sbjct: 140 atagtatgtaaatgcattcattttctctgcatcga 174
>gb|AY163988.1| Arabidopsis thaliana isolate 032_7 chloroplast sequence 7 Length = 354 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 424 atagtatggaaatgcattcattttctttgcatcga 458 |||||||| ||||||||||||||||| |||||||| Sbjct: 141 atagtatgtaaatgcattcattttctctgcatcga 175
>gb|AY163987.1| Arabidopsis thaliana isolate 031_7 chloroplast sequence 7 Length = 355 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 424 atagtatggaaatgcattcattttctttgcatcga 458 |||||||| ||||||||||||||||| |||||||| Sbjct: 142 atagtatgtaaatgcattcattttctctgcatcga 176
>gb|AY163986.1| Arabidopsis thaliana isolate 030_7 chloroplast sequence 7 Length = 353 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 424 atagtatggaaatgcattcattttctttgcatcga 458 |||||||| ||||||||||||||||| |||||||| Sbjct: 140 atagtatgtaaatgcattcattttctctgcatcga 174
>gb|AY163985.1| Arabidopsis thaliana isolate 029_7 chloroplast sequence 7 Length = 354 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 424 atagtatggaaatgcattcattttctttgcatcga 458 |||||||| ||||||||||||||||| |||||||| Sbjct: 141 atagtatgtaaatgcattcattttctctgcatcga 175
>gb|AY163984.1| Arabidopsis thaliana isolate 028_7 chloroplast sequence 7 Length = 354 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 424 atagtatggaaatgcattcattttctttgcatcga 458 |||||||| ||||||||||||||||| |||||||| Sbjct: 141 atagtatgtaaatgcattcattttctctgcatcga 175
>gb|AY163983.1| Arabidopsis thaliana isolate 027_7 chloroplast sequence 7 Length = 353 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 424 atagtatggaaatgcattcattttctttgcatcga 458 |||||||| ||||||||||||||||| |||||||| Sbjct: 140 atagtatgtaaatgcattcattttctctgcatcga 174
>gb|AY163982.1| Arabidopsis thaliana isolate 026_7 chloroplast sequence 7 Length = 354 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 424 atagtatggaaatgcattcattttctttgcatcga 458 |||||||| ||||||||||||||||| |||||||| Sbjct: 141 atagtatgtaaatgcattcattttctctgcatcga 175
>gb|AY163981.1| Arabidopsis thaliana isolate 025_7 chloroplast sequence 7 Length = 353 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 424 atagtatggaaatgcattcattttctttgcatcga 458 |||||||| ||||||||||||||||| |||||||| Sbjct: 140 atagtatgtaaatgcattcattttctctgcatcga 174
>gb|DQ124076.1| Coffea arabica clone MN-SSH3-A11 mRNA sequence Length = 565 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 143 ggattatgggagtgtgtgacttgaattattgatt 176 ||||||||||||||||||||||||| | |||||| Sbjct: 189 ggattatgggagtgtgtgacttgaactgttgatt 156 Score = 44.1 bits (22), Expect = 0.43 Identities = 37/42 (88%) Strand = Plus / Minus Query: 271 aggataggctggttcacttgaggagaatatcttctatgatca 312 ||||||||||||||| ||||| |||||| ||||||||||| Sbjct: 61 aggataggctggttcgcttgaagagaattatttctatgatca 20
>dbj|AP005672.1| Physcomitrella patens subsp. patens chloroplast DNA, complete genome Length = 122890 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 145 attatgggagtgtgtgacttgaatta 170 |||||||||||||||||||||||||| Sbjct: 7502 attatgggagtgtgtgacttgaatta 7477
>gb|AY590877.1| Ginkgo biloba petB-petD intergenic spacer, partial sequence; and PetD (petD) gene, intron and partial cds; chloroplast Length = 931 Score = 50.1 bits (25), Expect = 0.007 Identities = 25/25 (100%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaa 167 ||||||||||||||||||||||||| Sbjct: 199 ggattatgggagtgtgtgacttgaa 223
>emb|CT573216.1| Medicago truncatula chromosome 5 clone mte1-79f1, COMPLETE SEQUENCE Length = 117869 Score = 48.1 bits (24), Expect = 0.027 Identities = 30/32 (93%) Strand = Plus / Plus Query: 424 atagtatggaaatgcattcattttctttgcat 455 ||||||||||||||||||||||| || ||||| Sbjct: 38730 atagtatggaaatgcattcatttcctatgcat 38761
>gb|AC125368.7| Medicago truncatula clone mth2-13h15, complete sequence Length = 124271 Score = 44.1 bits (22), Expect = 0.43 Identities = 37/42 (88%) Strand = Plus / Plus Query: 271 aggataggctggttcacttgaggagaatatcttctatgatca 312 ||||||||| ||||| ||||| |||||| | ||||||||||| Sbjct: 79743 aggataggccggttcgcttgaagagaatcttttctatgatca 79784 Score = 44.1 bits (22), Expect = 0.43 Identities = 31/34 (91%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatt 176 |||||||||| ||||||||||| || |||||||| Sbjct: 79618 ggattatgggtgtgtgtgacttaaactattgatt 79651
>gb|AC135797.13| Medicago truncatula clone mth2-11f7, complete sequence Length = 118242 Score = 44.1 bits (22), Expect = 0.43 Identities = 37/42 (88%) Strand = Plus / Plus Query: 271 aggataggctggttcacttgaggagaatatcttctatgatca 312 ||||||||| ||||| ||||| |||||| | ||||||||||| Sbjct: 73714 aggataggccggttcgcttgaagagaatcttttctatgatca 73755 Score = 44.1 bits (22), Expect = 0.43 Identities = 31/34 (91%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgacttgaattattgatt 176 |||||||||| ||||||||||| || |||||||| Sbjct: 73589 ggattatgggtgtgtgtgacttaaactattgatt 73622
>emb|X04465.1|CHMPXX Marchantia polymorpha chloroplast genome DNA Length = 121024 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgactt 164 |||||||||||||||||||||| Sbjct: 72710 ggattatgggagtgtgtgactt 72731
>tpg|BK000438.1| TPA: TPA_exp: Homo sapiens RING finger protein COP1 gene, complete cds Length = 421987 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 395 tctctatttattacacttacct 416 |||||||||||||||||||||| Sbjct: 155346 tctctatttattacacttacct 155367
>emb|AJ616980.1| Nicotiana plumbaginifolia cDNA-AFLP fragment, clone Np115 Length = 154 Score = 44.1 bits (22), Expect = 0.43 Identities = 37/42 (88%) Strand = Plus / Plus Query: 271 aggataggctggttcacttgaggagaatatcttctatgatca 312 ||||||||||||||| ||| | |||||| | ||||||||||| Sbjct: 62 aggataggctggttcgcttaaagagaatcttttctatgatca 103
>dbj|AB098220.1| Nicotiana sylvestris petB gene for cytochrom b6, partial cds Length = 363 Score = 44.1 bits (22), Expect = 0.43 Identities = 28/30 (93%) Strand = Plus / Plus Query: 17 gtatttcattgctacaagcatgggttattg 46 |||||||||||||||||| |||| |||||| Sbjct: 272 gtatttcattgctacaagtatggattattg 301
>emb|AL359265.8| Human DNA sequence from clone RP11-195C7 on chromosome 1 Contains the 5' end of the gene for constitutive photomorphogenic protein (COP1), a novel gene, a ribosomal protein L13 (RPL13) pseudogene, a novel pseudogene and a CpG island, complete sequence Length = 155805 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 395 tctctatttattacacttacct 416 |||||||||||||||||||||| Sbjct: 460 tctctatttattacacttacct 439
>emb|AL162736.20| Human DNA sequence from clone RP11-415M14 on chromosome 1q24.1-24.3 Contains part of the gene for constitutive photomorphogenic protein (COP1), complete sequence Length = 12541 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 395 tctctatttattacacttacct 416 |||||||||||||||||||||| Sbjct: 11001 tctctatttattacacttacct 10980
>gb|AY178864.1| Adiantum capillus-veneris chloroplast, complete genome Length = 150568 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 143 ggattatgggagtgtgtgact 163 ||||||||||||||||||||| Sbjct: 72023 ggattatgggagtgtgtgact 72043
>emb|AL356863.12| Human DNA sequence from clone RP11-131P10 on chromosome 13 Contains a novel gene (BM-002), complete sequence Length = 122752 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 89 agtatttttatacgatacaaatagttgaa 117 ||||||||| ||| ||||||||||||||| Sbjct: 18583 agtatttttttacaatacaaatagttgaa 18555
>emb|CR855258.6| Zebrafish DNA sequence from clone DKEY-2N12 in linkage group 5, complete sequence Length = 141618 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 41 ttattgtaaaataacacatgt 61 ||||||||||||||||||||| Sbjct: 65512 ttattgtaaaataacacatgt 65492
>gb|AC129912.2| Homo sapiens chromosome 11, clone CTC-830J2, complete sequence Length = 121025 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 207 acattagaattcacaaccaaa 227 ||||||||||||||||||||| Sbjct: 21094 acattagaattcacaaccaaa 21074
>gb|AC105001.3| Homo sapiens chromosome 8, clone CTD-2135J3, complete sequence Length = 157442 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 371 atcagtcatgtgacatgatcc 391 ||||||||||||||||||||| Sbjct: 20137 atcagtcatgtgacatgatcc 20117
>emb|BX324171.9| Zebrafish DNA sequence from clone DKEYP-57C9 in linkage group 5, complete sequence Length = 151068 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 41 ttattgtaaaataacacatgt 61 ||||||||||||||||||||| Sbjct: 31941 ttattgtaaaataacacatgt 31921
>dbj|AP003076.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0481E12 Length = 161563 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 205 ccacattagaattcacaacca 225 ||||||||||||||||||||| Sbjct: 61688 ccacattagaattcacaacca 61708
>gb|AC139427.3| Homo sapiens chromosome 11, clone RP13-849E10, complete sequence Length = 145885 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 207 acattagaattcacaaccaaa 227 ||||||||||||||||||||| Sbjct: 71586 acattagaattcacaaccaaa 71606
>dbj|AK071261.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023084C08, full insert sequence Length = 1521 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 205 ccacattagaattcacaacca 225 ||||||||||||||||||||| Sbjct: 770 ccacattagaattcacaacca 750
>gb|AC005965.1| Arabidopsis thaliana BAC T19G15, from chromosome V near 60.5 cM, complete sequence Length = 77036 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 47 taaaataacacatgtcattt 66 |||||||||||||||||||| Sbjct: 51299 taaaataacacatgtcattt 51318
>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome Length = 5237682 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 gaaaaaaggcggattatggg 152 |||||||||||||||||||| Sbjct: 3071056 gaaaaaaggcggattatggg 3071037
>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome Length = 5227419 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 gaaaaaaggcggattatggg 152 |||||||||||||||||||| Sbjct: 2976610 gaaaaaaggcggattatggg 2976591
>gb|AC183596.2| Pan troglodytes BAC clone CH251-679I13 from chromosome 6, complete sequence Length = 214528 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 aaatagttgaagttaatttt 126 |||||||||||||||||||| Sbjct: 134629 aaatagttgaagttaatttt 134610
>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome Length = 5228663 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 gaaaaaaggcggattatggg 152 |||||||||||||||||||| Sbjct: 2977173 gaaaaaaggcggattatggg 2977154
>gb|U91324.1|HUU91324 Homo sapiens Chromosome 16 BAC clone CIT987-SKA-100B4 ~complete genomic sequence, complete sequence Length = 174826 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 ttattgtaaaataacacatg 60 |||||||||||||||||||| Sbjct: 116315 ttattgtaaaataacacatg 116296
>gb|AC113020.9| Mus musculus chromosome 16, clone RP23-186N8, complete sequence Length = 214853 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 162 cttgaattattgatttggccatgc 185 ||||||||||| |||||||||||| Sbjct: 119114 cttgaattattcatttggccatgc 119091
>gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete sequence Length = 163782 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 433 aaatgcattcattttctttg 452 |||||||||||||||||||| Sbjct: 233 aaatgcattcattttctttg 252
>gb|CP000001.1| Bacillus cereus E33L, complete genome Length = 5300915 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 gaaaaaaggcggattatggg 152 |||||||||||||||||||| Sbjct: 3058629 gaaaaaaggcggattatggg 3058610
>gb|AC183951.3| Pan troglodytes BAC clone CH251-427H8 from chromosome 6, complete sequence Length = 166133 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 aaatagttgaagttaatttt 126 |||||||||||||||||||| Sbjct: 56157 aaatagttgaagttaatttt 56138
>gb|AC183671.2| Pan troglodytes BAC clone CH251-545A14 from chromosome 6, complete sequence Length = 222567 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 aaatagttgaagttaatttt 126 |||||||||||||||||||| Sbjct: 44073 aaatagttgaagttaatttt 44054
>emb|AL512642.18| Human DNA sequence from clone RP11-469L23 on chromosome 13 Contains the ALOX5AP gene for arachidonate 5-lipoxygenase-activating protein (FLAP) and a novel gene, complete sequence Length = 139255 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 403 tattacacttacctttttat 422 |||||||||||||||||||| Sbjct: 1583 tattacacttacctttttat 1602
>emb|AL450394.9| Human DNA sequence from clone RP11-358B19 on chromosome 6 Contains part of the gene for a novel EGF-like domain containing protein, complete sequence Length = 39088 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 aaatagttgaagttaatttt 126 |||||||||||||||||||| Sbjct: 16024 aaatagttgaagttaatttt 16005
>gb|AF533892.1| Mus musculus p63 (Trp63) gene, alternatively spliced, complete cds Length = 208158 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 162 cttgaattattgatttggccatgc 185 ||||||||||| |||||||||||| Sbjct: 65724 cttgaattattcatttggccatgc 65701
>emb|AL138681.17| Human DNA sequence from clone RP11-121O19 on chromosome 13q12.3-14.3 Contains the gene for highly charged protein (D13S106E) (FLJ32952) and two CpG islands, complete sequence Length = 126262 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 403 tattacacttacctttttat 422 |||||||||||||||||||| Sbjct: 125845 tattacacttacctttttat 125864
>emb|X86504.1|CPGART C.perfringens garT gene Length = 364 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 aaatagttgaagttaatttt 126 |||||||||||||||||||| Sbjct: 88 aaatagttgaagttaatttt 107
>gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome Length = 5373180 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 439 attcattttctttgcatcga 458 |||||||||||||||||||| Sbjct: 41321 attcattttctttgcatcga 41340
>gb|BC045679.1| Homo sapiens hypothetical protein LOC285878, mRNA (cDNA clone IMAGE:5299807) Length = 4341 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 433 aaatgcattcattttctttg 452 |||||||||||||||||||| Sbjct: 1113 aaatgcattcattttctttg 1132
>gb|AC108750.3| Homo sapiens 3 BAC RP11-249L12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 155484 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 174 atttggccatgcagataaagaatt 197 |||||||||| ||||||||||||| Sbjct: 66823 atttggccatacagataaagaatt 66846
>gb|AC010615.9| Homo sapiens chromosome 19 clone CTD-2561J22, complete sequence Length = 215962 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 430 tggaaatgcattcattttct 449 |||||||||||||||||||| Sbjct: 164490 tggaaatgcattcattttct 164471
>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome Length = 4171146 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 59 tgtcatttggatacttctcttcaa 82 ||||||| |||||||||||||||| Sbjct: 3637218 tgtcattgggatacttctcttcaa 3637195
>gb|AC182399.3| Pan troglodytes BAC clone CH251-19C24 from chromosome 6, complete sequence Length = 226479 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 aaatagttgaagttaatttt 126 |||||||||||||||||||| Sbjct: 192244 aaatagttgaagttaatttt 192225
>emb|BX511080.4| Zebrafish DNA sequence from clone DKEY-237N7 in linkage group 3, complete sequence Length = 115272 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 412 tacctttttattatagtatg 431 |||||||||||||||||||| Sbjct: 2323 tacctttttattatagtatg 2304
>emb|BX511165.4| Zebrafish DNA sequence from clone DKEY-22L14 in linkage group 7, complete sequence Length = 134966 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 agagtggaaatggaatcagt 376 |||||||||||||||||||| Sbjct: 59081 agagtggaaatggaatcagt 59100
>gb|AC096721.2| Homo sapiens BAC clone RP11-19C24 from 4, complete sequence Length = 161824 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 gaaagaaaaaaggcggatta 148 |||||||||||||||||||| Sbjct: 129749 gaaagaaaaaaggcggatta 129730
>gb|AC024261.6|AC024261 Arabidopsis thaliana chromosome 1 BAC F5D21 genomic sequence, complete sequence Length = 92652 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 47 taaaataacacatgtcattt 66 |||||||||||||||||||| Sbjct: 86247 taaaataacacatgtcattt 86266
>gb|AC068044.5| Homo sapiens BAC clone RP11-413N15 from 2, complete sequence Length = 182411 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 433 aaatgcattcattttctttg 452 |||||||||||||||||||| Sbjct: 150015 aaatgcattcattttctttg 149996
>gb|AC009323.4|AC009323 Arabidopsis thaliana chromosome I BAC F25P12 genomic sequence, complete sequence Length = 141748 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 313 taccgcaaccatgtcatccatgaa 336 |||||||| ||||||||||||||| Sbjct: 130541 taccgcaatcatgtcatccatgaa 130518
>dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete genome Length = 3031430 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 aaatagttgaagttaatttt 126 |||||||||||||||||||| Sbjct: 853559 aaatagttgaagttaatttt 853578
>emb|BX004838.8| Zebrafish DNA sequence from clone DKEY-29N1 in linkage group 7, complete sequence Length = 226160 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 357 agagtggaaatggaatcagt 376 |||||||||||||||||||| Sbjct: 153794 agagtggaaatggaatcagt 153775
>gb|AF077407.1|F9D12 Arabidopsis thaliana BAC F9D12 Length = 112253 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 47 taaaataacacatgtcattt 66 |||||||||||||||||||| Sbjct: 40050 taaaataacacatgtcattt 40069
>emb|BX649337.9| Zebrafish DNA sequence from clone DKEYP-98A7 in linkage group 22, complete sequence Length = 139453 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 428 tatggaaatgcattcattttcttt 451 ||||||||| |||||||||||||| Sbjct: 59166 tatggaaattcattcattttcttt 59189
>emb|AL929192.16| Zebrafish DNA sequence from clone CH211-250E5 in linkage group 22, complete sequence Length = 112623 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 428 tatggaaatgcattcattttcttt 451 ||||||||| |||||||||||||| Sbjct: 26147 tatggaaattcattcattttcttt 26124
>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome Length = 5411809 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 gaaaaaaggcggattatggg 152 |||||||||||||||||||| Sbjct: 3177763 gaaaaaaggcggattatggg 3177744
>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome Length = 5227293 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 gaaaaaaggcggattatggg 152 |||||||||||||||||||| Sbjct: 2976482 gaaaaaaggcggattatggg 2976463
>gb|AE017125.1| Helicobacter hepaticus ATCC 51449, complete genome Length = 1799146 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 ttgtggtatttcattgctac 31 |||||||||||||||||||| Sbjct: 1220419 ttgtggtatttcattgctac 1220438
>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome Length = 5224283 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 gaaaaaaggcggattatggg 152 |||||||||||||||||||| Sbjct: 3046889 gaaaaaaggcggattatggg 3046870
>dbj|AB076715.1| Taxodium distichum gapC gene for glyceraldehyde-3-phosphate dehydrogenase, partial cds Length = 1951 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 atagttgaagttaattttac 128 |||||||||||||||||||| Sbjct: 1184 atagttgaagttaattttac 1203 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,636,703 Number of Sequences: 3902068 Number of extensions: 5636703 Number of successful extensions: 126002 Number of sequences better than 10.0: 241 Number of HSP's better than 10.0 without gapping: 246 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 123920 Number of HSP's gapped (non-prelim): 1942 length of query: 491 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 469 effective length of database: 17,147,199,772 effective search space: 8042036693068 effective search space used: 8042036693068 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
