ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bast72d03 |
|---|---|
| Clone Library Name | barley_pub |
>POL2_GFLVN (Q91HK5) RNA2 polyprotein (P2) [Contains: P2A protein (2A);| Movement protein (2B-MP); Coat protein (2C-CP)] Length = 1110 Score = 29.3 bits (64), Expect = 3.9 Identities = 16/44 (36%), Positives = 20/44 (45%) Frame = +3 Query: 261 GRPSELVESKTENTEEDVTDEMTGGASRSLGFPTQEPFAFPGLR 392 G P++L T E D+T G AS LG FPGL+ Sbjct: 417 GNPTDLTVVATYGHERDMTRAFIGSASTFLGNGLARAIFFPGLQ 460
>POL2_GFLV (P18474) RNA2 polyprotein (P2) [Contains: P2A protein (2A);| Movement protein (2B-MP); Coat protein (2C-CP)] Length = 1109 Score = 29.3 bits (64), Expect = 3.9 Identities = 16/44 (36%), Positives = 20/44 (45%) Frame = +3 Query: 261 GRPSELVESKTENTEEDVTDEMTGGASRSLGFPTQEPFAFPGLR 392 G P++L T E D+T G AS LG FPGL+ Sbjct: 416 GNPTDLTVVATYGHERDMTRAFIGSASTFLGNGLARAIFFPGLQ 459
>RS24_METKA (Q8TVD8) 30S ribosomal protein S24e| Length = 116 Score = 29.3 bits (64), Expect = 3.9 Identities = 15/52 (28%), Positives = 29/52 (55%) Frame = +3 Query: 156 GTRRVVQSRCHTEEVEPGRFVRKCEKTEQLLRDCVGRPSELVESKTENTEED 311 G ++ +S H E++EP V E+ +++L + E ES++E +EE+ Sbjct: 67 GYAKIYKSMEHLEDIEPEHMV---ERHKKVLEELESESEESEESESEESEEE 115
>HEMY_HAEIN (P44772) Protein hemY homolog| Length = 428 Score = 28.9 bits (63), Expect = 5.2 Identities = 11/35 (31%), Positives = 22/35 (62%) Frame = +1 Query: 265 GPLSWWNQKLRTPKKMSQMK*PVVPRVLLASQHKS 369 G L+WWNQ+ R + ++K ++ R++ + H+S Sbjct: 247 GLLTWWNQQPRHRRNNIELKISLIQRLIDCNDHES 281
>KAD_TROWT (Q83G05) Adenylate kinase (EC 2.7.4.3) (ATP-AMP transphosphorylase)| Length = 186 Score = 28.5 bits (62), Expect = 6.7 Identities = 16/52 (30%), Positives = 24/52 (46%) Frame = +3 Query: 168 VVQSRCHTEEVEPGRFVRKCEKTEQLLRDCVGRPSELVESKTENTEEDVTDE 323 ++QSR + G R+ KT+ LRD V + +S T ED D+ Sbjct: 19 LIQSRLGISVIATGDVFRERMKTDMALRDIVSSGGYVSDSTTNRIVEDCLDK 70
>KAD_TROW8 (Q83I60) Adenylate kinase (EC 2.7.4.3) (ATP-AMP transphosphorylase)| Length = 186 Score = 28.5 bits (62), Expect = 6.7 Identities = 16/52 (30%), Positives = 24/52 (46%) Frame = +3 Query: 168 VVQSRCHTEEVEPGRFVRKCEKTEQLLRDCVGRPSELVESKTENTEEDVTDE 323 ++QSR + G R+ KT+ LRD V + +S T ED D+ Sbjct: 19 LIQSRLGISVIATGDVFRERMKTDMALRDIVSSGGYVSDSTTNRIVEDCLDK 70
>ACEK_SALTY (P51067) Isocitrate dehydrogenase kinase/phosphatase (EC 2.7.11.5)| (EC 3.1.3.-) (IDH kinase/phosphatase) (IDHK/P) Length = 583 Score = 28.5 bits (62), Expect = 6.7 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = +1 Query: 1 KSLPPIQIPQDRLASHPW 54 + +PP + P+D LAS PW Sbjct: 488 RDIPPARYPEDELASEPW 505
>ACEK_SALCH (Q57H42) Isocitrate dehydrogenase kinase/phosphatase (EC 2.7.11.5)| (EC 3.1.3.-) (IDH kinase/phosphatase) (IDHK/P) Length = 583 Score = 28.5 bits (62), Expect = 6.7 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = +1 Query: 1 KSLPPIQIPQDRLASHPW 54 + +PP + P+D LAS PW Sbjct: 488 RDIPPARYPEDELASEPW 505
>RIMB1_HUMAN (O95153) Peripheral-type benzodiazepine receptor-associated protein| 1 (PRAX-1) (Peripheral benzodiazepine receptor-interacting protein) (PBR-IP) (RIM-binding protein 1) (RIM-BP1) Length = 1857 Score = 28.5 bits (62), Expect = 6.7 Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 8/89 (8%) Frame = +3 Query: 174 QSRCHTEEVEPGRFVRKCEKTEQLLRDCVGRPSELVESKTE-----NTEEDVTDEMTGGA 338 + +C + E E + R+CE+ E LR + LVE + +E V E Sbjct: 348 RKKCESLEQEARKKQRRCEELELQLRQAQNENARLVEENSRLSGRATEKEQVEWENAELR 407 Query: 339 SRSLGFPTQEPFAF---PGLRSDIEAIEK 416 + LG + A GL+S +E++E+ Sbjct: 408 GQLLGVTQERDSALRKSQGLQSKLESLEQ 436
>ACEK_SALTI (Q8Z1V8) Isocitrate dehydrogenase kinase/phosphatase (EC 2.7.11.5)| (EC 3.1.3.-) (IDH kinase/phosphatase) (IDHK/P) Length = 593 Score = 28.5 bits (62), Expect = 6.7 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = +1 Query: 1 KSLPPIQIPQDRLASHPW 54 + +PP + P+D LAS PW Sbjct: 488 RDIPPARYPEDELASEPW 505
>RIMB1_MOUSE (Q7TNF8) Peripheral-type benzodiazepine receptor-associated protein| 1 (PRAX-1) (Peripheral benzodiazepine receptor-interacting protein) (PBR-IP) (RIM-binding protein 1) (RIM-BP1) Length = 1846 Score = 28.1 bits (61), Expect = 8.8 Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 8/89 (8%) Frame = +3 Query: 174 QSRCHTEEVEPGRFVRKCEKTEQLLRDCVGRPSELVESKTE-----NTEEDVTDEMTGGA 338 + +C + E E + R+CE+ E LR + LVE + +E V E + Sbjct: 344 RKKCESLEQEARKKQRRCEELELQLRAAQNENARLVEENSRLSGRATEKEQVEWENSELK 403 Query: 339 SRSLGFPTQEPFAF---PGLRSDIEAIEK 416 + LG + A GL+S +E++E+ Sbjct: 404 GQLLGVTQERDSALLKSQGLQSKLESLEQ 432
>ENPL_PIG (Q29092) Endoplasmin precursor (Heat shock protein 90 kDa beta| member 1) (94 kDa glucose-regulated protein) (GRP94) (gp96 homolog) (98 kDa protein kinase) (PPK 98) (ppk98) Length = 804 Score = 28.1 bits (61), Expect = 8.8 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = +3 Query: 267 PSELVESKTENTEEDVTDEMTGGA 338 P E E TE+TE+D +EM GA Sbjct: 763 PEETTEDTTEDTEQDDDEEMDAGA 786 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,012,718 Number of Sequences: 219361 Number of extensions: 550099 Number of successful extensions: 1848 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 1828 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1848 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2286875994 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
