>PO2F1_MOUSE (P25425) POU domain, class 2, transcription factor 1|
           (Octamer-binding transcription factor 1) (Oct-1) (OTF-1)
           (NF-A1)
          Length = 770

 Score = 32.3 bits (72), Expect = 0.56
 Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = -1

Query: 421 TS*ATWDGTFTTRAWRRGCSWRRLLPWPRRSAITARLTSPTCHSG-ATRASKLVRATSSF 245
           TS A  + + T +  RRGCSW  L   P R   TA  T  T ++  AT  S    A+S+ 
Sbjct: 488 TSAAVTNLSLTDQDLRRGCSWEVLRSLPDRVTTTAGTTDSTSNNNTATVISTAPPASSAV 547

Query: 244 YLPFLPSS 221
             P L  S
Sbjct: 548 TSPSLSPS 555

>RENT1_NEUCR (Q9HEH1) Regulator of nonsense transcripts 1 homolog|
          Length = 1093

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 12/104 (11%)
 Frame = +3

Query: 162 PPHYQKLYSSIKILASI-------GSQDDGRKGR*KLEVARTSLLALVAPEWHVGEVSLA 320
           P HYQ ++  +  + S           +DG + R  L +    + + + P+   G+V LA
Sbjct: 280 PYHYQNIFGPLVKMESDYDKKLKEAQSEDGLQVRWHLGLNSKHVASFILPKIESGDVKLA 339

Query: 321 VIAERRGQGSRRRHEHPLRQ-----ARVVKVPSHVAQDVQLERR 437
           V     G   R +++  LR        V+K+P++ + +V++E R
Sbjct: 340 V-----GDEMRLKYKGELRPPWEGVGYVIKIPNNQSDEVEVELR 378

>ATM_DROME (Q5EAK6) Serine/threonine-protein kinase ATM (EC 2.7.11.1) (Telomere|
            fusion protein)
          Length = 2767

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -3

Query: 239  SLSAVVLASD*CQNFDAAVQFLVMWWCKLGKQSMA 135
            +LS VV+AS+ CQ +  ++ +L +W C    +S A
Sbjct: 1710 NLSNVVMASNHCQAYFLSIMYLELWACSESPKSKA 1744

>RL15E_SULAC (Q4JB20) 50S ribosomal protein L15e|
          Length = 217

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -1

Query: 397 TFTTRAWRRGCSWRRLLPWPRRSAITARLTSPT 299
           T+  + WRR    +RL+ W R+ AIT R+  PT
Sbjct: 12  TWQNKDWRRSILRKRLIEWRRQPAIT-RIDRPT 43

>DPO42_RHIME (Q92XH8) DNA polymerase IV 2 (EC 2.7.7.7) (Pol IV 2)|
          Length = 354

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +3

Query: 195 KILASIGSQDDGRKGR*KLEVARTSLLALVAPEWHVGEVS 314
           +I  SIG++D  R+    LE AR  L  L+   WH  E S
Sbjct: 237 RIRKSIGAEDTFREDVHDLETARAGLKPLIDKVWHYCEAS 276

>PLDB2_ARATH (O23078) Phospholipase D beta 2 (EC 3.1.4.4) (AtPLDbeta2) (PLD beta|
           2) (PLDdelta1)
          Length = 915

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 28/101 (27%), Positives = 39/101 (38%), Gaps = 3/101 (2%)
 Frame = +3

Query: 33  HVAELMRKDSLDHHNPRSSFYTLRITDYGKSTVKSHALFPQFAPPHYQKLYSSIKILASI 212
           H   +     LDHH+P  S+Y     DY       H   P + P  Y   +SS   L+  
Sbjct: 28  HHGSMSHSGPLDHHHPPMSYYA--SFDY------QHQPPPPYPPVSYYASFSSHSDLSYS 79

Query: 213 GSQDDGRKGR*KLEVARTSLLALVAPEWHV---GEVSLAVI 326
           G  D    G        TS  +  +P  H+   G+ SL V+
Sbjct: 80  GRLDSSGHG-------FTSTASPHSPGMHIVPFGKASLKVL 113

>CCSA_MARPO (P12214) Cytochrome c biogenesis protein ccsA|
          Length = 320

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = -1

Query: 313 LTSPTC---HSGATRASKLVRATSSFYLPFLPSSWLPIDAKILMLLYSFW*CG 164
           +T+P+    H  AT +       S F +P L S WL +   ++ML YS   CG
Sbjct: 101 ITAPSAMLTHGFATLSLPKEMQESVFLVPALQSHWLMMHVTMMMLSYSTLLCG 153

>ATR_HUMAN (Q13535) Serine/threonine-protein kinase ATR (EC 2.7.11.1) (Ataxia|
            telangiectasia and Rad3-related protein) (FRAP-related
            protein 1)
          Length = 2644

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 168  HYQKLYSSIKILASIGSQDDGRKG 239
            HYQ++++ + ILAS  S DD  +G
Sbjct: 1086 HYQQVFNGLSILASFASSDDPYQG 1109

>SDC3_HUMAN (O75056) Syndecan-3 (SYND3)|
          Length = 384

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 18/41 (43%), Positives = 21/41 (51%)
 Frame = -1

Query: 388 TRAWRRGCSWRRLLPWPRRSAITARLTSPTCHSGATRASKL 266
           T A  R    RRLLP P  +  TAR T+P   S  T A+ L
Sbjct: 141 TTAVIRTTGVRRLLPLPLTTVATARATTPEAPSPPTTAAVL 181

>ATR_MOUSE (Q9JKK8) Serine/threonine-protein kinase ATR (EC 2.7.11.1) (Ataxia|
            telangiectasia and Rad3-related protein)
          Length = 2635

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 168  HYQKLYSSIKILASIGSQDDGRKG 239
            HYQ++++ + ILAS  S DD  +G
Sbjct: 1086 HYQQVFNGLSILASFASSDDPYQG 1109

>ATR_XENLA (Q9DE14) Serine/threonine-protein kinase atr (EC 2.7.11.1) (Ataxia|
            telangiectasia and Rad3-related protein) (Xatr)
          Length = 2654

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 168  HYQKLYSSIKILASIGSQDDGRKG 239
            HYQ+++S + ILA+  S DD  +G
Sbjct: 1101 HYQQVFSGLSILATYASNDDPYQG 1124


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,629,265
Number of Sequences: 219361
Number of extensions: 1101766
Number of successful extensions: 3419
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3419
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2735358828
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)