Clone Name | FLbaf13m10 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_001064057.1| Oryza sativa (japonica cultivar-group) Os06g0324400 (Os06g0324400) mRNA, complete cds Length = 522 Score = 139 bits (70), Expect = 1e-29 Identities = 121/138 (87%) Strand = Plus / Plus Query: 103 atggcgaccatcaaagccaaggtcaaggacgccgcctcctccgccaaggccggcatcgat 162 ||||||||||| |||||||||| | ||||||| || |||||||||||||||||| || | Sbjct: 81 atggcgaccatgaaagccaaggccgaggacgcggcatcctccgccaaggccggcgtccac 140 Query: 163 aaggcgaaggcctccgccggcgagaaggtacagaaggcgacgaccacggacccgaggaag 222 ||||| |||||| |||||||||||||||| ||||||||||||| |||||||| |||| Sbjct: 141 aaggccaaggccaccgccggcgagaaggtggagaaggcgacgacgggggacccgatgaag 200 Query: 223 aagcgtgaggcggaggag 240 ||||| |||||||||||| Sbjct: 201 aagcgggaggcggaggag 218
>dbj|AK063726.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-120-D12, full insert sequence Length = 522 Score = 139 bits (70), Expect = 1e-29 Identities = 121/138 (87%) Strand = Plus / Plus Query: 103 atggcgaccatcaaagccaaggtcaaggacgccgcctcctccgccaaggccggcatcgat 162 ||||||||||| |||||||||| | ||||||| || |||||||||||||||||| || | Sbjct: 81 atggcgaccatgaaagccaaggccgaggacgcggcatcctccgccaaggccggcgtccac 140 Query: 163 aaggcgaaggcctccgccggcgagaaggtacagaaggcgacgaccacggacccgaggaag 222 ||||| |||||| |||||||||||||||| ||||||||||||| |||||||| |||| Sbjct: 141 aaggccaaggccaccgccggcgagaaggtggagaaggcgacgacgggggacccgatgaag 200 Query: 223 aagcgtgaggcggaggag 240 ||||| |||||||||||| Sbjct: 201 aagcgggaggcggaggag 218
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 101 bits (51), Expect = 3e-18 Identities = 81/91 (89%) Strand = Plus / Minus Query: 103 atggcgaccatcaaagccaaggtcaaggacgccgcctcctccgccaaggccggcatcgat 162 ||||||||||| |||||||||| | ||||||| || |||||||||||||||||| || | Sbjct: 12508920 atggcgaccatgaaagccaaggccgaggacgcggcatcctccgccaaggccggcgtccac 12508861 Query: 163 aaggcgaaggcctccgccggcgagaaggtac 193 ||||| |||||| |||||||||||||||||| Sbjct: 12508860 aaggccaaggccaccgccggcgagaaggtac 12508830 Score = 54.0 bits (27), Expect = 6e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 194 agaaggcgacgaccacggacccgaggaagaagcgtgaggcggaggag 240 ||||||||||||| |||||||| ||||||||| |||||||||||| Sbjct: 12508752 agaaggcgacgacgggggacccgatgaagaagcgggaggcggaggag 12508706 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 cctcctccgccaaggccggc 156 |||||||||||||||||||| Sbjct: 2087917 cctcctccgccaaggccggc 2087898
>dbj|AP004750.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0421H01 Length = 142638 Score = 101 bits (51), Expect = 3e-18 Identities = 81/91 (89%) Strand = Plus / Minus Query: 103 atggcgaccatcaaagccaaggtcaaggacgccgcctcctccgccaaggccggcatcgat 162 ||||||||||| |||||||||| | ||||||| || |||||||||||||||||| || | Sbjct: 82654 atggcgaccatgaaagccaaggccgaggacgcggcatcctccgccaaggccggcgtccac 82595 Query: 163 aaggcgaaggcctccgccggcgagaaggtac 193 ||||| |||||| |||||||||||||||||| Sbjct: 82594 aaggccaaggccaccgccggcgagaaggtac 82564 Score = 54.0 bits (27), Expect = 6e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 194 agaaggcgacgaccacggacccgaggaagaagcgtgaggcggaggag 240 ||||||||||||| |||||||| ||||||||| |||||||||||| Sbjct: 82486 agaaggcgacgacgggggacccgatgaagaagcgggaggcggaggag 82440
>ref|XM_001223953.1| Chaetomium globosum CBS 148.51 hypothetical protein (CHGG_04740) mRNA, complete cds Length = 729 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 110 ccatcaaagccaaggtcaagga 131 |||||||||||||||||||||| Sbjct: 512 ccatcaaagccaaggtcaagga 533
>gb|AE000666.1| Methanothermobacter thermautotrophicus str. Delta H, complete genome Length = 1751377 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 110 ccatcaaagccaaggtcaagga 131 |||||||||||||||||||||| Sbjct: 1067853 ccatcaaagccaaggtcaagga 1067832
>gb|AC136150.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0023F12, complete sequence Length = 147801 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 69 cggcgaccgcgcgggcacgtg 89 ||||||||||||||||||||| Sbjct: 20647 cggcgaccgcgcgggcacgtg 20627
>gb|AC137759.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0008H02, complete sequence Length = 143438 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 69 cggcgaccgcgcgggcacgtg 89 ||||||||||||||||||||| Sbjct: 121181 cggcgaccgcgcgggcacgtg 121161
>gb|AF463459.1| Attacus ricini ribosomal DNA repeat unit, complete sequence Length = 10324 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 299 acgccgccgagaggtccggga 319 ||||||||||||||||||||| Sbjct: 7242 acgccgccgagaggtccggga 7262
>gb|AF423922.1| Hemileuca sp. L6 isolate L6 28S ribosomal RNA gene, partial sequence Length = 2216 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 299 acgccgccgagaggtccggga 319 ||||||||||||||||||||| Sbjct: 1977 acgccgccgagaggtccggga 1997
>gb|AF423921.1| Galleria melonella isolate L3 28S ribosomal RNA gene, partial sequence Length = 2304 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 299 acgccgccgagaggtccggga 319 ||||||||||||||||||||| Sbjct: 2067 acgccgccgagaggtccggga 2087
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11 Length = 28386948 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 69 cggcgaccgcgcgggcacgtg 89 ||||||||||||||||||||| Sbjct: 17613121 cggcgaccgcgcgggcacgtg 17613101
>gb|M99429.1|PHNSHSPA Ipomoea nil small heat shock protein, complete cds Length = 1243 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 222 gaagcgtgaggcggaggagaa 242 ||||||||||||||||||||| Sbjct: 751 gaagcgtgaggcggaggagaa 771
>emb|X93408.1|MSD728S M.sexta 28S rRNA gene, expansion segment D7 Length = 321 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 299 acgccgccgagaggtccggga 319 ||||||||||||||||||||| Sbjct: 113 acgccgccgagaggtccggga 133
>dbj|AB014342.1| Bombyx mori gene for hemocytin, transcriptional regulatory region and 5'UTR Length = 4303 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 299 acgccgccgagaggtccggga 319 ||||||||||||||||||||| Sbjct: 183 acgccgccgagaggtccggga 163
>ref|NM_001069120.1| Oryza sativa (japonica cultivar-group) Os09g0115600 (Os09g0115600) mRNA, complete cds Length = 1719 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 gagcgcgaggagaaagggga 296 |||||||||||||||||||| Sbjct: 224 gagcgcgaggagaaagggga 205
>ref|NM_001063282.1| Oryza sativa (japonica cultivar-group) Os06g0139800 (Os06g0139800) mRNA, complete cds Length = 1298 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 cctcctccgccaaggccggc 156 |||||||||||||||||||| Sbjct: 385 cctcctccgccaaggccggc 366
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 144 cgccaaggccggcatcgataaggc 167 |||||||||||||||||| ||||| Sbjct: 2702960 cgccaaggccggcatcgacaaggc 2702937
>ref|XM_597194.2| PREDICTED: Bos taurus similar to PITPNM family member 3 (LOC518986), mRNA Length = 2367 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 179 ccggcgagaaggtacagaag 198 |||||||||||||||||||| Sbjct: 1565 ccggcgagaaggtacagaag 1584
>ref|XM_608956.2| PREDICTED: Bos taurus similar to Nucleolar preribosomal-associated protein 1 (LOC530483), mRNA Length = 8377 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 231 ggcggaggagaacaaggagg 250 |||||||||||||||||||| Sbjct: 3015 ggcggaggagaacaaggagg 3034
>ref|NM_001003351.1| Canis familiaris laminin, gamma 2 (LAMC2), mRNA gb|AF236864.2| Canis familiaris laminin-5 gamma 2 mRNA, complete cds Length = 3974 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 153 cggcatcgataaggcgaaggcctc 176 ||||||||| |||||||||||||| Sbjct: 2710 cggcatcgagaaggcgaaggcctc 2687
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9 Length = 22696651 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 gagcgcgaggagaaagggga 296 |||||||||||||||||||| Sbjct: 1185001 gagcgcgaggagaaagggga 1185020
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 acggcgaccgcgcgggcacg 87 |||||||||||||||||||| Sbjct: 23396513 acggcgaccgcgcgggcacg 23396532
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 514 tcctatctcttctctccctt 533 |||||||||||||||||||| Sbjct: 13648535 tcctatctcttctctccctt 13648554
>dbj|AP003329.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1045F02 Length = 215378 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 514 tcctatctcttctctccctt 533 |||||||||||||||||||| Sbjct: 202495 tcctatctcttctctccctt 202514
>emb|AL731896.10| Mouse DNA sequence from clone RP23-348D11 on chromosome 11 Contains a ribosomal protein L15 (Rpl15) pseudogene and a SNARE protein Ykt (0610042I15Rik) pseudogene, complete sequence Length = 226786 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 436 taacagcatgtagcagagta 455 |||||||||||||||||||| Sbjct: 116906 taacagcatgtagcagagta 116887
>gb|AC007883.3| Homo sapiens BAC clone RP11-508L23 from 2, complete sequence Length = 113189 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 517 tatctcttctctccctttaattta 540 ||||||||||||||| |||||||| Sbjct: 41159 tatctcttctctcccgttaattta 41136
>dbj|AP004182.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1199_H01 Length = 107252 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 acggcgaccgcgcgggcacg 87 |||||||||||||||||||| Sbjct: 77737 acggcgaccgcgcgggcacg 77756
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 116 aagccaaggtcaaggacgccgcct 139 ||||||||| |||||||||||||| Sbjct: 235063 aagccaaggccaaggacgccgcct 235086
>dbj|AP003708.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0041F13 Length = 163230 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 cctcctccgccaaggccggc 156 |||||||||||||||||||| Sbjct: 108779 cctcctccgccaaggccggc 108760
>dbj|AP003336.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1151H08 Length = 123001 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 514 tcctatctcttctctccctt 533 |||||||||||||||||||| Sbjct: 53773 tcctatctcttctctccctt 53792
>dbj|AP005789.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0563F09 Length = 174905 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 gagcgcgaggagaaagggga 296 |||||||||||||||||||| Sbjct: 15875 gagcgcgaggagaaagggga 15894
>dbj|AP005569.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1310_F05 Length = 107916 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 gagcgcgaggagaaagggga 296 |||||||||||||||||||| Sbjct: 73595 gagcgcgaggagaaagggga 73614
>dbj|AP004276.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0453G03 Length = 144480 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 acggcgaccgcgcgggcacg 87 |||||||||||||||||||| Sbjct: 16410 acggcgaccgcgcgggcacg 16429
>dbj|AK099343.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033028L08, full insert sequence Length = 1666 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 gagcgcgaggagaaagggga 296 |||||||||||||||||||| Sbjct: 178 gagcgcgaggagaaagggga 159
>dbj|AK060378.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-009-D07, full insert sequence Length = 1719 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 gagcgcgaggagaaagggga 296 |||||||||||||||||||| Sbjct: 224 gagcgcgaggagaaagggga 205
>dbj|AK058604.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-A01, full insert sequence Length = 1313 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 cctcctccgccaaggccggc 156 |||||||||||||||||||| Sbjct: 400 cctcctccgccaaggccggc 381
>dbj|D14529.1|PSEEST5 Pseudomonas sp. est5 gene for esterase V, complete cds Length = 1466 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 178 gccggcgagaaggtacagaaggcg 201 |||||||||||||| ||||||||| Sbjct: 1431 gccggcgagaaggttcagaaggcg 1454 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 73,101,689 Number of extensions: 3699720 Number of successful extensions: 79914 Number of sequences better than 10.0: 38 Number of HSP's gapped: 79914 Number of HSP's successfully gapped: 41 Length of query: 570 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 548 Effective length of database: 18,508,616,841 Effective search space: 10142722028868 Effective search space used: 10142722028868 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)