ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf65l02 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK243380.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J100063B05, full insert sequence Length = 738 Score = 161 bits (81), Expect = 5e-36 Identities = 171/201 (85%) Strand = Plus / Plus Query: 347 gtggtgatggggatggtgctcaccggcgccgtggcggccacgggcgcgatagcggaggtc 406 |||||| |||||||||||||| |||| |||||||| || | ||||| ||| |||| || Sbjct: 342 gtggtgttggggatggtgctcgccggtgccgtggcctccgccggcgccatatcggacatc 401 Query: 407 gggaggaacggcaactcgcacgccgggtggctgccgatctgcgaggaggtgcacggctac 466 | || ||||||||||||||||||||||||||||||| | |||| | || | |||| |||| Sbjct: 402 gcgaagaacggcaactcgcacgccgggtggctgccggtgtgcgggcagatacacgcctac 461 Query: 467 tgcaaccaggtcatgggagccctcatcgccggcttcgtcgcgctggtcgtctacttcctc 526 |||||||| ||||||| || ||||||||||||||||||||||||| |||| ||||| || Sbjct: 462 tgcaaccacgtcatggcggcgctcatcgccggcttcgtcgcgctggccgtccacttcgtc 521 Query: 527 atcatcatgcactccctccac 547 || ||||| ||||||||||| Sbjct: 522 gtcgtcatgtactccctccac 542 Score = 60.0 bits (30), Expect = 1e-05 Identities = 87/106 (82%) Strand = Plus / Plus Query: 168 tcatggtgaccagccgcgagaccaccaacctgttcggcctggaaatcgaggccaagttct 227 |||||||||| ||||| |||||||||| | | |||||| | | || |||||||||| || Sbjct: 163 tcatggtgacgagccgtgagaccaccagcttcttcggcattcagatggaggccaagtact 222 Query: 228 cccacattccctcatttatcttcttcgtggttgcctacgccgtggc 273 || ||| || || ||||||||||||||||| || || |||||||| Sbjct: 223 cctacaccccatcttttatcttcttcgtggtggcgtatgccgtggc 268
>ref|NM_001061549.1| Oryza sativa (japonica cultivar-group) Os05g0245300 (Os05g0245300) mRNA, complete cds Length = 849 Score = 161 bits (81), Expect = 5e-36 Identities = 171/201 (85%) Strand = Plus / Plus Query: 347 gtggtgatggggatggtgctcaccggcgccgtggcggccacgggcgcgatagcggaggtc 406 |||||| |||||||||||||| |||| |||||||| || | ||||| ||| |||| || Sbjct: 376 gtggtgttggggatggtgctcgccggtgccgtggcctccgccggcgccatatcggacatc 435 Query: 407 gggaggaacggcaactcgcacgccgggtggctgccgatctgcgaggaggtgcacggctac 466 | || ||||||||||||||||||||||||||||||| | |||| | || | |||| |||| Sbjct: 436 gcgaagaacggcaactcgcacgccgggtggctgccggtgtgcgggcagatacacgcctac 495 Query: 467 tgcaaccaggtcatgggagccctcatcgccggcttcgtcgcgctggtcgtctacttcctc 526 |||||||| ||||||| || ||||||||||||||||||||||||| |||| ||||| || Sbjct: 496 tgcaaccacgtcatggcggcgctcatcgccggcttcgtcgcgctggccgtccacttcgtc 555 Query: 527 atcatcatgcactccctccac 547 || ||||| ||||||||||| Sbjct: 556 gtcgtcatgtactccctccac 576 Score = 60.0 bits (30), Expect = 1e-05 Identities = 87/106 (82%) Strand = Plus / Plus Query: 168 tcatggtgaccagccgcgagaccaccaacctgttcggcctggaaatcgaggccaagttct 227 |||||||||| ||||| |||||||||| | | |||||| | | || |||||||||| || Sbjct: 197 tcatggtgacgagccgtgagaccaccagcttcttcggcattcagatggaggccaagtact 256 Query: 228 cccacattccctcatttatcttcttcgtggttgcctacgccgtggc 273 || ||| || || ||||||||||||||||| || || |||||||| Sbjct: 257 cctacaccccatcttttatcttcttcgtggtggcgtatgccgtggc 302
>dbj|AB091471.1| Oryza sativa (japonica cultivar-group) OsBLE3 mRNA for hypothetical protein, complete cds Length = 865 Score = 161 bits (81), Expect = 5e-36 Identities = 171/201 (85%) Strand = Plus / Plus Query: 347 gtggtgatggggatggtgctcaccggcgccgtggcggccacgggcgcgatagcggaggtc 406 |||||| |||||||||||||| |||| |||||||| || | ||||| ||| |||| || Sbjct: 376 gtggtgttggggatggtgctcgccggtgccgtggcctccgccggcgccatatcggacatc 435 Query: 407 gggaggaacggcaactcgcacgccgggtggctgccgatctgcgaggaggtgcacggctac 466 | || ||||||||||||||||||||||||||||||| | |||| | || | |||| |||| Sbjct: 436 gcgaagaacggcaactcgcacgccgggtggctgccggtgtgcgggcagatacacgcctac 495 Query: 467 tgcaaccaggtcatgggagccctcatcgccggcttcgtcgcgctggtcgtctacttcctc 526 |||||||| ||||||| || ||||||||||||||||||||||||| |||| ||||| || Sbjct: 496 tgcaaccacgtcatggcggcgctcatcgccggcttcgtcgcgctggccgtccacttcgtc 555 Query: 527 atcatcatgcactccctccac 547 || ||||| ||||||||||| Sbjct: 556 gtcgtcatgtactccctccac 576 Score = 60.0 bits (30), Expect = 1e-05 Identities = 87/106 (82%) Strand = Plus / Plus Query: 168 tcatggtgaccagccgcgagaccaccaacctgttcggcctggaaatcgaggccaagttct 227 |||||||||| ||||| |||||||||| | | |||||| | | || |||||||||| || Sbjct: 197 tcatggtgacgagccgtgagaccaccagcttcttcggcattcagatggaggccaagtact 256 Query: 228 cccacattccctcatttatcttcttcgtggttgcctacgccgtggc 273 || ||| || || ||||||||||||||||| || || |||||||| Sbjct: 257 cctacaccccatcttttatcttcttcgtggtggcgtatgccgtggc 302
>gb|AC119290.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0037H06, complete sequence Length = 144457 Score = 157 bits (79), Expect = 8e-35 Identities = 169/199 (84%) Strand = Plus / Minus Query: 349 ggtgatggggatggtgctcaccggcgccgtggcggccacgggcgcgatagcggaggtcgg 408 |||| |||||||||||||| |||| |||||||| || | ||||| ||| |||| ||| Sbjct: 79135 ggtgttggggatggtgctcgccggtgccgtggcctccgccggcgccatatcggacatcgc 79076 Query: 409 gaggaacggcaactcgcacgccgggtggctgccgatctgcgaggaggtgcacggctactg 468 || ||||||||||||||||||||||||||||||| | |||| | || | |||| |||||| Sbjct: 79075 gaagaacggcaactcgcacgccgggtggctgccggtgtgcgggcagatacacgcctactg 79016 Query: 469 caaccaggtcatgggagccctcatcgccggcttcgtcgcgctggtcgtctacttcctcat 528 |||||| ||||||| || ||||||||||||||||||||||||| |||| ||||| || | Sbjct: 79015 caaccacgtcatggcggcgctcatcgccggcttcgtcgcgctggccgtccacttcgtcgt 78956 Query: 529 catcatgcactccctccac 547 | ||||| ||||||||||| Sbjct: 78955 cgtcatgtactccctccac 78937
>gb|AC137624.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0680F01, complete sequence Length = 156691 Score = 157 bits (79), Expect = 8e-35 Identities = 169/199 (84%) Strand = Plus / Minus Query: 349 ggtgatggggatggtgctcaccggcgccgtggcggccacgggcgcgatagcggaggtcgg 408 |||| |||||||||||||| |||| |||||||| || | ||||| ||| |||| ||| Sbjct: 155116 ggtgttggggatggtgctcgccggtgccgtggcctccgccggcgccatatcggacatcgc 155057 Query: 409 gaggaacggcaactcgcacgccgggtggctgccgatctgcgaggaggtgcacggctactg 468 || ||||||||||||||||||||||||||||||| | |||| | || | |||| |||||| Sbjct: 155056 gaagaacggcaactcgcacgccgggtggctgccggtgtgcgggcagatacacgcctactg 154997 Query: 469 caaccaggtcatgggagccctcatcgccggcttcgtcgcgctggtcgtctacttcctcat 528 |||||| ||||||| || ||||||||||||||||||||||||| |||| ||||| || | Sbjct: 154996 caaccacgtcatggcggcgctcatcgccggcttcgtcgcgctggccgtccacttcgtcgt 154937 Query: 529 catcatgcactccctccac 547 | ||||| ||||||||||| Sbjct: 154936 cgtcatgtactccctccac 154918
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 157 bits (79), Expect = 8e-35 Identities = 169/199 (84%) Strand = Plus / Minus Query: 349 ggtgatggggatggtgctcaccggcgccgtggcggccacgggcgcgatagcggaggtcgg 408 |||| |||||||||||||| |||| |||||||| || | ||||| ||| |||| ||| Sbjct: 8746693 ggtgttggggatggtgctcgccggtgccgtggcctccgccggcgccatatcggacatcgc 8746634 Query: 409 gaggaacggcaactcgcacgccgggtggctgccgatctgcgaggaggtgcacggctactg 468 || ||||||||||||||||||||||||||||||| | |||| | || | |||| |||||| Sbjct: 8746633 gaagaacggcaactcgcacgccgggtggctgccggtgtgcgggcagatacacgcctactg 8746574 Query: 469 caaccaggtcatgggagccctcatcgccggcttcgtcgcgctggtcgtctacttcctcat 528 |||||| ||||||| || ||||||||||||||||||||||||| |||| ||||| || | Sbjct: 8746573 caaccacgtcatggcggcgctcatcgccggcttcgtcgcgctggccgtccacttcgtcgt 8746514 Query: 529 catcatgcactccctccac 547 | ||||| ||||||||||| Sbjct: 8746513 cgtcatgtactccctccac 8746495
>emb|CT836450.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN008L16, full insert sequence Length = 871 Score = 153 bits (77), Expect = 1e-33 Identities = 170/201 (84%) Strand = Plus / Plus Query: 347 gtggtgatggggatggtgctcaccggcgccgtggcggccacgggcgcgatagcggaggtc 406 |||||| |||||||||||||| |||| |||||||| || | ||||| ||| |||| || Sbjct: 403 gtggtgttggggatggtgctcgccggtgccgtggcctccgccggcgccatatcggacatc 462 Query: 407 gggaggaacggcaactcgcacgccgggtggctgccgatctgcgaggaggtgcacggctac 466 | || ||||||||||||||||||||||||||||||| | |||| | || | |||| |||| Sbjct: 463 gcgaagaacggcaactcgcacgccgggtggctgccggtgtgcgggcagatacacgcctac 522 Query: 467 tgcaaccaggtcatgggagccctcatcgccggcttcgtcgcgctggtcgtctacttcctc 526 |||||||| ||||||| || ||||||||||||||||||| ||||| |||| ||||| || Sbjct: 523 tgcaaccacgtcatggcggcgctcatcgccggcttcgtcgggctggccgtccacttcgtc 582 Query: 527 atcatcatgcactccctccac 547 || ||||| ||||||||||| Sbjct: 583 gtcgtcatgtactccctccac 603 Score = 60.0 bits (30), Expect = 1e-05 Identities = 87/106 (82%) Strand = Plus / Plus Query: 168 tcatggtgaccagccgcgagaccaccaacctgttcggcctggaaatcgaggccaagttct 227 |||||||||| ||||| |||||||||| | | |||||| | | || |||||||||| || Sbjct: 224 tcatggtgacgagccgtgagaccaccagcttcttcggcattcagatggaggccaagtact 283 Query: 228 cccacattccctcatttatcttcttcgtggttgcctacgccgtggc 273 || ||| || || ||||||||||||||||| || || |||||||| Sbjct: 284 cctacaccccatcttttatcttcttcgtggtggcgtatgccgtggc 329
>ref|NM_001049067.1| Oryza sativa (japonica cultivar-group) Os01g0237000 (Os01g0237000) mRNA, complete cds Length = 1012 Score = 48.1 bits (24), Expect = 0.052 Identities = 66/80 (82%) Strand = Plus / Plus Query: 342 ccgacgtggtgatggggatggtgctcaccggcgccgtggcggccacgggcgcgatagcgg 401 ||||||||||| | || ||||||||| ||||||| | ||||| ||||||| || |||| Sbjct: 441 ccgacgtggtgctcggcatggtgctcgccggcgcgttcgcggcggcgggcgccatggcgg 500 Query: 402 aggtcgggaggaacggcaac 421 || | |||| |||||||||| Sbjct: 501 agctggggaagaacggcaac 520
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 48.1 bits (24), Expect = 0.052 Identities = 66/80 (82%) Strand = Plus / Plus Query: 342 ccgacgtggtgatggggatggtgctcaccggcgccgtggcggccacgggcgcgatagcgg 401 ||||||||||| | || ||||||||| ||||||| | ||||| ||||||| || |||| Sbjct: 7587958 ccgacgtggtgctcggcatggtgctcgccggcgcgttcgcggcggcgggcgccatggcgg 7588017 Query: 402 aggtcgggaggaacggcaac 421 || | |||| |||||||||| Sbjct: 7588018 agctggggaagaacggcaac 7588037
>dbj|AP001539.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0708G02 Length = 168976 Score = 48.1 bits (24), Expect = 0.052 Identities = 66/80 (82%) Strand = Plus / Plus Query: 342 ccgacgtggtgatggggatggtgctcaccggcgccgtggcggccacgggcgcgatagcgg 401 ||||||||||| | || ||||||||| ||||||| | ||||| ||||||| || |||| Sbjct: 136750 ccgacgtggtgctcggcatggtgctcgccggcgcgttcgcggcggcgggcgccatggcgg 136809 Query: 402 aggtcgggaggaacggcaac 421 || | |||| |||||||||| Sbjct: 136810 agctggggaagaacggcaac 136829
>dbj|AK062426.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-102-H04, full insert sequence Length = 1013 Score = 48.1 bits (24), Expect = 0.052 Identities = 66/80 (82%) Strand = Plus / Plus Query: 342 ccgacgtggtgatggggatggtgctcaccggcgccgtggcggccacgggcgcgatagcgg 401 ||||||||||| | || ||||||||| ||||||| | ||||| ||||||| || |||| Sbjct: 441 ccgacgtggtgctcggcatggtgctcgccggcgcgttcgcggcggcgggcgccatggcgg 500 Query: 402 aggtcgggaggaacggcaac 421 || | |||| |||||||||| Sbjct: 501 agctggggaagaacggcaac 520
>gb|U80437.2| Caenorhabditis elegans cosmid C43E11, complete sequence Length = 44096 Score = 44.1 bits (22), Expect = 0.82 Identities = 22/22 (100%) Strand = Plus / Plus Query: 513 tcgtctacttcctcatcatcat 534 |||||||||||||||||||||| Sbjct: 36752 tcgtctacttcctcatcatcat 36773
>gb|AC150524.3| Bos taurus BAC CH240-89P8 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 189720 Score = 44.1 bits (22), Expect = 0.82 Identities = 22/22 (100%) Strand = Plus / Minus Query: 224 ttctcccacattccctcattta 245 |||||||||||||||||||||| Sbjct: 94860 ttctcccacattccctcattta 94839
>ref|XM_501562.1| Yarrowia lipolytica CLIB122, YALI0C07590g predicted mRNA Length = 1254 Score = 44.1 bits (22), Expect = 0.82 Identities = 22/22 (100%) Strand = Plus / Plus Query: 509 ctggtcgtctacttcctcatca 530 |||||||||||||||||||||| Sbjct: 967 ctggtcgtctacttcctcatca 988
>ref|NM_058940.2| Caenorhabditis elegans C43E11.2a (C43E11.2) mRNA, complete cds Length = 1339 Score = 44.1 bits (22), Expect = 0.82 Identities = 22/22 (100%) Strand = Plus / Plus Query: 513 tcgtctacttcctcatcatcat 534 |||||||||||||||||||||| Sbjct: 541 tcgtctacttcctcatcatcat 562
>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica Length = 3272609 Score = 44.1 bits (22), Expect = 0.82 Identities = 22/22 (100%) Strand = Plus / Minus Query: 509 ctggtcgtctacttcctcatca 530 |||||||||||||||||||||| Sbjct: 998192 ctggtcgtctacttcctcatca 998171
>gb|CP000480.1| Mycobacterium smegmatis str. MC2 155, complete genome Length = 6988209 Score = 42.1 bits (21), Expect = 3.2 Identities = 33/37 (89%) Strand = Plus / Plus Query: 480 tgggagccctcatcgccggcttcgtcgcgctggtcgt 516 |||| ||| |||||||||||||| ||||| ||||||| Sbjct: 280010 tgggtgccgtcatcgccggcttcctcgcggtggtcgt 280046
>gb|CP000431.1| Rhodococcus sp. RHA1, complete genome Length = 7804765 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 129 ggctcgtcgcggccgtcaccg 149 ||||||||||||||||||||| Sbjct: 1594394 ggctcgtcgcggccgtcaccg 1594414
>gb|AY534123.1|SEG_AY534122S2 Aegilops tauschii transposons Caspar, XJ, Angela, and XJ, complete sequence; LRR protein WM1.7 (WM1.7) and LRR protein WM1.12 (WM1.12) genes, complete cds; transposons Ophelia2, Angela3s, and XJ3, complete sequence; LRR protein WM1.3 (WM1.3) gene, complete cds; Stowaway MITE, transposons XJ1, Jody, Angela, and XJ and Stowaway MITE, complete sequence; LRR protein WM1.2 (WM1.2) and LLR protein WM1.1 (WM1.1) genes, complete cds; transposons XJ, XA, Angela, and Fred and WM1.11 gene, complete sequence; RPM1-like sequence and LRR protein WM1.10 (WM1.10) genes, complete cds; and transposon XJ, complete sequence Length = 198649 Score = 42.1 bits (21), Expect = 3.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 113 gtctccgtcgtgctcaggctcgtcg 137 ||||||| ||||||||||||||||| Sbjct: 152688 gtctccggcgtgctcaggctcgtcg 152664
>emb|BX901899.9| Zebrafish DNA sequence from clone DKEY-255N6 in linkage group 16, complete sequence Length = 127034 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 4 atcttgttctccctttgatca 24 ||||||||||||||||||||| Sbjct: 116793 atcttgttctccctttgatca 116773
>gb|AC107425.6| Homo sapiens 3 BAC RP11-497L23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 130297 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 820 ttcttgaacacgtatttttaa 840 ||||||||||||||||||||| Sbjct: 12652 ttcttgaacacgtatttttaa 12632
>emb|AJ339526.1|HSA339526 Homo sapiens genomic sequence surrounding NotI site, clone NR5-O29C Length = 767 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 299 ctcgtgccgccagggggcgcc 319 ||||||||||||||||||||| Sbjct: 348 ctcgtgccgccagggggcgcc 328
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 487 cctcatcgccggcttcgtcgc 507 ||||||||||||||||||||| Sbjct: 286975 cctcatcgccggcttcgtcgc 286955 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 141,211,181 Number of extensions: 8020307 Number of successful extensions: 181114 Number of sequences better than 10.0: 23 Number of HSP's gapped: 181114 Number of HSP's successfully gapped: 27 Length of query: 857 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 835 Effective length of database: 18,508,616,841 Effective search space: 15454695062235 Effective search space used: 15454695062235 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
