>LOC_Os01g01060:12001.t00006:unspliced-genomic 40S ribosomal protein S5, putative, expressed|
Length = 1514
Score = 196 bits (423), Expect(4) = e-100
Identities = 80/91 (87%), Positives = 87/91 (95%)
Frame = +2 / +2
Query: 152 QVTDISLNDYLAVTSTKHYTFLPHSAGRYSAKRFRKAQCPIIERLTNSLMMHGRNNGKKI 331
QV DISL DYLAV+STKH T+LPH+AGRYSAKRFRKAQCP++ERLTNSLMMHGRNNGKKI
Sbjct: 230 QVNDISLADYLAVSSTKHATYLPHTAGRYSAKRFRKAQCPLVERLTNSLMMHGRNNGKKI 409
Query: 332 MAVRIIKHTMEIIHLLTDANPIQIIVDAIIN 424
MAVRI+KH MEIIHLLTDANPIQ+IVDAIIN
Sbjct: 410 MAVRIVKHAMEIIHLLTDANPIQVIVDAIIN 502
Score = 155 bits (334), Expect(4) = e-100
Identities = 66/71 (92%), Positives = 70/71 (98%)
Frame = +2 / +3
Query: 416 IINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNVKTIAECLAD 595
+++SGPREDATRIGSAG VRRQAVDISPLRRVNQAIYLLTTGARESAFRN+KTIAECLAD
Sbjct: 942 VVHSGPREDATRIGSAGAVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLAD 1121
Query: 596 ELINAAKGSSN 628
ELINAAKGSSN
Sbjct: 1122 ELINAAKGSSN 1154
Score = 43.2 bits (88), Expect(4) = e-100
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +2 / +2
Query: 629 SYAIKKKDEIERVAKANR* 685
SYAIKKKDEIERVAKANR*
Sbjct: 1226 SYAIKKKDEIERVAKANR* 1282
Score = 37.3 bits (75), Expect(4) = e-100
Identities = 17/26 (65%), Positives = 18/26 (69%)
Frame = +2 / +3
Query: 80 AMAVAEPVPGGDVKLFNRWTFEDVQV 157
AMAV E VKLFN W+FEDVQV
Sbjct: 81 AMAVVEQPQQQVVKLFNCWSFEDVQV 158
Score = 173 bits (372), Expect(4) = 4e-87
Identities = 76/91 (83%), Positives = 78/91 (85%)
Frame = -2 / -3
Query: 426 LLMMASTMIWMGLASVRRWMISMVCLMMRTAMIFLPLLRPCIMRELVRRSMMGHCALRKR 247
LLMMASTM WMGLASVRRWMISM CL MRTAMIFLPLLRPCIMRELVRRS GHCALRKR
Sbjct: 504 LLMMASTMTWMGLASVRRWMISMACLTMRTAMIFLPLLRPCIMRELVRRSTRGHCALRKR 325
Query: 246 LAE*RPAECGRKV*CFVDVTAR*SFSEMSVT 154
AE*RPA CGR V CFV+ TAR*S +MS T
Sbjct: 324 FAE*RPAVCGR*VACFVEDTAR*SARDMSFT 232
Score = 135 bits (289), Expect(4) = 4e-87
Identities = 60/69 (86%), Positives = 64/69 (92%)
Frame = -2 / -2
Query: 630 LLDEPLAALISSSARHSAMVLTLRKALSLAPVVRR*MAWFTLLRGEISTACLLTTPADPI 451
LLDEPLAAL+SSSARHSAMVL KALSLAPVVRR*+AW TLL+GEISTACLLT PA+PI
Sbjct: 1156 LLDEPLAALMSSSARHSAMVLMFLKALSLAPVVRR*IAWLTLLKGEISTACLLTAPAEPI 977
Query: 450 RVASSRGPL 424
RVASSRGPL
Sbjct: 976 RVASSRGPL 950
Score = 47.8 bits (98), Expect(4) = 4e-87
Identities = 18/32 (56%), Positives = 23/32 (71%)
Frame = -3 / -1
Query: 701 QMHIHLNG*PWQHARSRPSS*WRNCWMSPWQH 606
+M LNG PWQHA+S PSS*W +C +S +H
Sbjct: 1298 EMGSALNGSPWQHAQSHPSS*WHSCNISELEH 1203
Score = 31.3 bits (62), Expect(4) = 4e-87
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = -1 / -1
Query: 157 HLNILEGPAVEELH 116
+LN+ EGPAVEELH
Sbjct: 158 NLNVFEGPAVEELH 117
Score = 91.3 bits (193), Expect(4) = 4e-45
Identities = 37/58 (63%), Positives = 46/58 (79%)
Frame = -1 / -1
Query: 607 IDQLISKALSNGLDITESALPGTSGQKVDGLVHPPEGGDIHSLSPHNTS*PNTGSILT 434
ID+LISKALSNGLD+ + LPG SG++VD LV PP+G DIHSL PH+ S +TG +LT
Sbjct: 1133 IDELISKALSNGLDVPKGTLPGASGEEVDCLVDPPQGRDIHSLPPHSASRADTGCVLT 960
Score = 87.2 bits (184), Expect(4) = 4e-45
Identities = 39/48 (81%), Positives = 40/48 (83%)
Frame = -1 / -2
Query: 352 LDDADGHDLLAVVAPVHHEGVGEALDDGALRLAEALGRVAPGGVRQEG 209
LDDAD HDLLAVVA VHHEGVGEAL +GALRLAEAL RVA VRQ G
Sbjct: 430 LDDADSHDLLAVVAAVHHEGVGEALHEGALRLAEALRRVAASRVRQVG 287
Score = 36.8 bits (74), Expect(4) = 4e-45
Identities = 18/24 (75%), Positives = 19/24 (79%)
Frame = -2 / -3
Query: 699 DAHPS*RLALATRSISSFFLMA*L 628
D + R ALATRSISSFFLMA*L
Sbjct: 1296 DGFSTQRFALATRSISSFFLMA*L 1225
Score = 30.4 bits (60), Expect(4) = 4e-45
Identities = 17/26 (65%), Positives = 19/26 (73%)
Frame = -2 / -2
Query: 156 T*TSSKVQRLKSFTSPPGTGSATAMA 79
T*TSSK Q+LKSFT+ S TAMA
Sbjct: 157 T*TSSKDQQLKSFTTCCCGCSTTAMA 80
Score = 103 bits (219), Expect(4) = 8e-43
Identities = 43/66 (65%), Positives = 48/66 (72%)
Frame = +1 / +2
Query: 436 *GCYPYWVSWCCEETGCGYLPPQEGEPGHLPSDHWCQGERFP*CQDHC*VPC**ADQCCQ 615
*G PY + W CEE GCGYL +EG+PG+LP HW QGE QDHC*VPC**A QC Q
Sbjct: 962 *GRNPYRLCWRCEEAGCGYLSLEEGQPGNLPPHHWRQGECL*EHQDHC*VPC**AHQCRQ 1141
Query: 616 GLIQQL 633
GLIQQ+
Sbjct: 1142 GLIQQV 1159
Score = 67.0 bits (140), Expect(4) = 8e-43
Identities = 26/32 (81%), Positives = 26/32 (81%)
Frame = +1 / +1
Query: 259 GAVPHHRAPHQLPHDARAQQRQEDHGRPHHQA 354
GAVP APHQLPHDAR QQRQEDHG PH QA
Sbjct: 337 GAVPPRGAPHQLPHDARPQQRQEDHGCPHRQA 432
Score = 37.7 bits (76), Expect(4) = 8e-43
Identities = 16/26 (61%), Positives = 17/26 (65%)
Frame = +1 / +1
Query: 607 CCQGLIQQLRHQEEGRDRACCQG*PL 684
C + QL HQEEG D ACCQG PL
Sbjct: 1204 CSNSDMLQLCHQEEG*D*ACCQGEPL 1281
Score = 29.9 bits (59), Expect(4) = 8e-43
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1 / +1
Query: 151 SGDRHLAERLPRGDVDE 201
+G+RH+ RLPRG +DE
Sbjct: 229 AGERHIPRRLPRGVLDE 279
Score = 63.4 bits (132), Expect(3) = 4e-16
Identities = 23/31 (74%), Positives = 25/31 (80%)
Frame = -3 / -3
Query: 629 CWMSPWQH*SAHQQGTQQWS*HYGKRSPWHQ 537
CWMSPW+H* AHQQGTQQWS* + SPW Q
Sbjct: 1155 CWMSPWRH**AHQQGTQQWS*CS*RHSPWRQ 1063
Score = 38.2 bits (77), Expect(3) = 4e-16
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = -3 / -3
Query: 491 YPQPVSSQHQLTQYG*HPHVAHC 423
YPQP SSQ Q ++YG PH C
Sbjct: 1017 YPQPASSQRQQSRYGLRPHAGRC 949
Score = 26.3 bits (51), Expect(3) = 4e-16
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -3 / -1
Query: 290 W*GAR*WGTAPCG 252
W*GA GTAPCG
Sbjct: 368 W*GAPRGGTAPCG 330
Score = 50.6 bits (104), Expect(2) = 6e-06
Identities = 25/39 (64%), Positives = 25/39 (64%)
Frame = +3 / +1
Query: 435 VRMLPVLGQLVL*GDRLWISPPSGG*TRPSTF*PLVPGR 551
VR PV L L*G RLWIS P GG TR ST PL PGR
Sbjct: 961 VRTQPVSALLAL*GGRLWISLP*GGSTRQSTSSPLAPGR 1077
Score = 23.1 bits (44), Expect(2) = 6e-06
Identities = 10/28 (35%), Positives = 12/28 (42%)
Frame = +1 / +1
Query: 268 PHHRAPHQLPHDARAQQRQEDHGRPHHQ 351
PH +A H +Q H R HHQ
Sbjct: 418 PHRQARHGDHPPPHRRQPHPGHRRCHHQ 501
>LOC_Os11g29190:12011.t02525:unspliced-genomic 40S ribosomal protein S5, putative, expressed|
Length = 2097
Score = 197 bits (425), Expect(4) = e-100
Identities = 82/95 (86%), Positives = 87/95 (91%)
Frame = +2 / +1
Query: 149 VQVTDISLNDYLAVTSTKHYTFLPHSAGRYSAKRFRKAQCPIIERLTNSLMMHGRNNGKK 328
VQV DISL DYLAV TKH T+LPH+AGRYSAKRFRKAQCPI+ERLTNSLMMHGRNNGKK
Sbjct: 259 VQVNDISLADYLAVNPTKHATYLPHTAGRYSAKRFRKAQCPIVERLTNSLMMHGRNNGKK 438
Query: 329 IMAVRIIKHTMEIIHLLTDANPIQIIVDAIINSGP 433
IMAVRI+KH MEIIHLLTDANPIQ+IVDAIIN P
Sbjct: 439 IMAVRIVKHAMEIIHLLTDANPIQVIVDAIINR*P 543
Score = 156 bits (336), Expect(4) = e-100
Identities = 67/73 (91%), Positives = 70/73 (95%)
Frame = +2 / +2
Query: 416 IINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNVKTIAECLAD 595
++ SGPREDATRIGSAG VRRQAVDISPLRRVNQAIYLLTTGARESAFRN+KTIAECLAD
Sbjct: 1418 VVCSGPREDATRIGSAGAVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLAD 1597
Query: 596 ELINAAKGSSNSY 634
ELINAAKGSSN Y
Sbjct: 1598 ELINAAKGSSNRY 1636
Score = 43.7 bits (89), Expect(4) = e-100
Identities = 17/25 (68%), Positives = 19/25 (76%)
Frame = +1 / +2
Query: 610 CQGLIQQLRHQEEGRDRACCQG*PL 684
C ++ QL HQEEG DRACCQG PL
Sbjct: 1697 CDLIVFQLCHQEEG*DRACCQGQPL 1771
Score = 36.3 bits (73), Expect(4) = e-100
Identities = 13/19 (68%), Positives = 17/19 (89%)
Frame = +2 / +2
Query: 101 VPGGDVKLFNRWTFEDVQV 157
+P +VKLF+RW+FEDVQV
Sbjct: 125 LPQQEVKLFSRWSFEDVQV 181
Score = 158 bits (340), Expect(4) = 1e-80
Identities = 73/97 (75%), Positives = 75/97 (77%)
Frame = -2 / -2
Query: 432 GPLLMMASTMIWMGLASVRRWMISMVCLMMRTAMIFLPLLRPCIMRELVRRSMMGHCALR 253
G LLMMASTM MGLASVRRWMISM CL MRTAMIF PLLRPCIM ELVRRS MGHCA R
Sbjct: 542 GYLLMMASTMT*MGLASVRRWMISMACLTMRTAMIFFPLLRPCIMSELVRRSTMGHCAFR 363
Query: 252 KRLAE*RPAECGRKV*CFVDVTAR*SFSEMSVT*TSS 142
AE PA CGR V CFV TAR*S SEMS T T++
Sbjct: 362 NLFAEYLPAVCGRYVACFVGFTAR*SASEMSFTCTAA 252
Score = 138 bits (296), Expect(4) = 1e-80
Identities = 62/69 (89%), Positives = 64/69 (92%)
Frame = -2 / -1
Query: 630 LLDEPLAALISSSARHSAMVLTLRKALSLAPVVRR*MAWFTLLRGEISTACLLTTPADPI 451
LLDEPLAALISSSARHSAMVL KALSLAPVVRR*+AW TLL+GEISTACLLT PADPI
Sbjct: 1632 LLDEPLAALISSSARHSAMVLMFLKALSLAPVVRR*IAWLTLLKGEISTACLLTAPADPI 1453
Query: 450 RVASSRGPL 424
RVASSRGPL
Sbjct: 1452 RVASSRGPL 1426
Score = 41.4 bits (84), Expect(4) = 1e-80
Identities = 15/19 (78%), Positives = 16/19 (84%)
Frame = -3 / -1
Query: 686 LNG*PWQHARSRPSS*WRN 630
LNG PWQHARS PSS*W +
Sbjct: 1773 LNGWPWQHARSHPSS*WHS 1717
Score = 28.6 bits (56), Expect(4) = 1e-80
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = -1 / -3
Query: 157 HLNILEGPAVEEL 119
HL++LEGPA EEL
Sbjct: 181 HLDVLEGPAAEEL 143
Score = 127 bits (273), Expect(4) = 2e-49
Identities = 48/71 (67%), Positives = 54/71 (76%)
Frame = +1 / +1
Query: 427 WAT*GCYPYWVSWCCEETGCGYLPPQEGEPGHLPSDHWCQGERFP*CQDHC*VPC**ADQ 606
W +*GC PYWV CCEE GCGYL +EG+PG+LP HWCQGER QDHC*VPC* A
Sbjct: 1429 WPS*GCDPYWVCGCCEEAGCGYLSLEEGQPGNLPPHHWCQGERLQEHQDHC*VPC*RAY* 1608
Query: 607 CCQGLIQQLRH 639
C QGLIQQ++H
Sbjct: 1609 CRQGLIQQVQH 1641
Score = 62.5 bits (130), Expect(4) = 2e-49
Identities = 24/32 (75%), Positives = 25/32 (78%)
Frame = +1 / +3
Query: 259 GAVPHHRAPHQLPHDARAQQRQEDHGRPHHQA 354
GAVPH AP QL HDAR QQR+EDHGR H QA
Sbjct: 369 GAVPHRGAPDQLAHDARPQQREEDHGRAHRQA 464
Score = 43.2 bits (88), Expect(4) = 2e-49
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +2 / +3
Query: 629 SYAIKKKDEIERVAKANR* 685
SYAIKKKDEIERVAKANR*
Sbjct: 1716 SYAIKKKDEIERVAKANR* 1772
Score = 28.1 bits (55), Expect(4) = 2e-49
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1 / +3
Query: 145 GCSGDRHLAERLPRGDVDE 201
G +G+RHLA LP G+ DE
Sbjct: 255 GGAGERHLAGGLPGGEPDE 311
Score = 100 bits (214), Expect(4) = 3e-43
Identities = 42/61 (68%), Positives = 50/61 (81%)
Frame = -1 / -3
Query: 607 IDQLISKALSNGLDITESALPGTSGQKVDGLVHPPEGGDIHSLSPHNTS*PNTGSILTWP 428
I++L+SKALSNGLD+ E ALPGTSG++VD LV PP+G DIHSL PH+T PNTG ILT
Sbjct: 1609 INKLVSKALSNGLDVPEGALPGTSGEEVDCLVDPPQGRDIHSLPPHSTRRPNTGRILTRA 1430
Query: 427 T 425
T
Sbjct: 1429 T 1427
Score = 75.3 bits (158), Expect(4) = 3e-43
Identities = 34/46 (73%), Positives = 35/46 (76%)
Frame = -1 / -1
Query: 352 LDDADGHDLLAVVAPVHHEGVGEALDDGALRLAEALGRVAPGGVRQ 215
LDDA GHDLL VVA VHHE VG+AL DGALRL E L RV P VRQ
Sbjct: 462 LDDAHGHDLLPVVAAVHHERVGQALHDGALRLPEPLRRVPPRRVRQ 325
Score = 38.2 bits (77), Expect(4) = 3e-43
Identities = 18/18 (100%), Positives = 18/18 (100%)
Frame = -2 / -3
Query: 681 RLALATRSISSFFLMA*L 628
RLALATRSISSFFLMA*L
Sbjct: 1768 RLALATRSISSFFLMA*L 1715
Score = 26.3 bits (51), Expect(4) = 3e-43
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -2 / -1
Query: 156 T*TSSKVQRLKSFTSPPGTGSA 91
T TSSK QRLKS TS G+ ++
Sbjct: 180 TWTSSKDQRLKSLTSCCGSSTS 115
Score = 65.7 bits (137), Expect(3) = 2e-19
Identities = 24/31 (77%), Positives = 26/31 (83%)
Frame = -3 / -2
Query: 629 CWMSPWQH*SAHQQGTQQWS*HYGKRSPWHQ 537
CWMSPW+H* A QQGTQQWS* +RSPWHQ
Sbjct: 1631 CWMSPWRH**ARQQGTQQWS*CS*RRSPWHQ 1539
Score = 49.2 bits (101), Expect(3) = 2e-19
Identities = 17/23 (73%), Positives = 17/23 (73%)
Frame = -3 / -2
Query: 491 YPQPVSSQHQLTQYG*HPHVAHC 423
YPQP SSQH TQYG HPH HC
Sbjct: 1493 YPQPASSQHPQTQYGSHPHEGHC 1425
Score = 25.4 bits (49), Expect(3) = 2e-19
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -3 / -3
Query: 290 W*GAR*WGTAPCG 252
W GA WGTAP G
Sbjct: 400 WSGAPRWGTAPSG 362
Score = 62.5 bits (130), Expect = 4e-09
Identities = 32/45 (71%), Positives = 32/45 (71%)
Frame = +3 / +3
Query: 426 VGHVRMLPVLGQLVL*GDRLWISPPSGG*TRPSTF*PLVPGRALS 560
V VRM PVLG VL*G RLWIS P GG TR ST PLVPGRA S
Sbjct: 1428 VALVRMRPVLGLRVL*GGRLWISLP*GGSTRQSTSSPLVPGRAPS 1562
>LOC_Os07g01020:12007.t00002:unspliced-genomic pyridoxin biosynthesis protein ER1, putative, expressed|
Length = 1398
Score = 31.3 bits (62), Expect(2) = 2.5
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +1 / +3
Query: 259 GAVPHHRAPHQLPHDARAQQRQEDHGRP 342
G PH R PH R + RQ GRP
Sbjct: 570 GPPPHPRGRRHDPHQGRGRHRQRRRGRP 653
Score = 22.6 bits (43), Expect(2) = 2.5
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +1 / +2
Query: 4 PRADSTRFSNSHAPAASSPLPTT 72
PR+ S + A SSP PTT
Sbjct: 437 PRSSRPSASTTSTRARSSPSPTT 505
>LOC_Os04g33370:12004.t03014:unspliced-genomic cytochrome P450 77A2, putative, expressed|
Length = 1977
Score = 28.6 bits (56), Expect(2) = 8.1
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +1 / +3
Query: 499 PQEGEPGHLPSDH 537
P+ EPGHLP DH
Sbjct: 1284 PRRREPGHLPPDH 1322
Score = 24.0 bits (46), Expect(2) = 8.1
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +1 / +3
Query: 295 PHDARAQQRQEDHGRPHHQ 351
P RA R + HG P HQ
Sbjct: 804 PPGGRAPPRADRHGAPAHQ 860
>LOC_Os01g38580:12001.t03394:unspliced-genomic beta,beta-carotene 9,10-dioxygenase, putative, expressed|
Length = 3691
Score = 24.9 bits (48), Expect(2) = 8.5
Identities = 8/18 (44%), Positives = 9/18 (50%)
Frame = +1 / +3
Query: 427 WAT*GCYPYWVSWCCEET 480
WA G WV+WC T
Sbjct: 1788 WAGSGTRTGWVAWCSRRT 1841
Score = 23.5 bits (45), Expect(2) = 8.5
Identities = 9/25 (36%), Positives = 11/25 (44%)
Frame = +1 / +1
Query: 271 HHRAPHQLPHDARAQQRQEDHGRPH 345
H R H+ P RA R+ PH
Sbjct: 1663 HRRRAHRQPQQRRAAARRRPGDVPH 1737
>LOC_Os03g54030:12003.t04718:unspliced-genomic transposon protein, putative, CACTA, En/Spm sub-class, expressed|
Length = 4568
Score = 31.3 bits (62), Expect = 9.7
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1 / +3
Query: 490 YLPPQEGEPGHLPSDHWCQGERFP 561
++PP+ GEPGH + C R+P
Sbjct: 33 HVPPRTGEPGHCEAWLVCDNHRYP 104
>LOC_Os01g23440:12001.t02071:unspliced-genomic expressed protein|
Length = 3413
Score = 31.3 bits (62), Expect = 9.7
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2 / +3
Query: 503 RRVNQAIYLLTTGARESAFRNVKTIAECLADELINAAKGSSNS 631
+R + + L+ GAR+ R IA CLA+E A + S
Sbjct: 2916 QRYERLVATLSAGARDKVLRGGAEIARCLAEEYTTAEEDDEAS 3044
Database: tigr.seq.out
Posted date: Jul 20, 2007 8:58 AM
Number of letters in database: 166,841,660
Number of sequences in database: 56,278
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 286,333,799
Number of extensions: 4272161
Number of successful extensions: 17596
Number of sequences better than 10.0: 29
Length of query: 292
Length of database: 55,613,886
Length adjustment: 49
Effective length of query: 243
Effective length of database: 52,856,264
Effective search space: 12844072152
Effective search space used: 12844072152
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)