ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | FLbaf114d13 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY105920.1| Zea mays PCO073266 mRNA sequence Length = 1079 Score = 383 bits (193), Expect = e-102 Identities = 538/653 (82%) Strand = Plus / Plus Query: 264 gaggagctcaacccctccgtcgccctgctcaggaagaccgcggaggccgtcggcgatttc 323 ||||| |||||||| ||||||| || || |||| || ||||||||||| ||||||||| Sbjct: 214 gaggaactcaacccatccgtcgatctacttaggagaactgcggaggccgttggcgatttc 273 Query: 324 aggaagacgcccatctacatcgtcgggacggactgcaatgccaagcgcaacatcgccaag 383 ||||| ||||| ||||| || || || ||||| |||| ||||||||||||||||||||| Sbjct: 274 aggaaaacgccaatctatattgttggtacggattgcacagccaagcgcaacatcgccaag 333 Query: 384 ctgctcgccaactccatcatttaccgctacctctgcagcgaggacctgctcgaggacgtc 443 ||||| || || ||||| || |||||||||||| |||| ||||| ||||| ||||| || Sbjct: 334 ctgcttgcgaattccataatataccgctacctcagcagtgaggaactgcttgaggatgtt 393 Query: 444 ctcggcggcaaggacgccctcgccgcgttccgggagtccgacgagaagggctacctcgaa 503 || || ||||||||||||||| || ||| ||| || || |||||||| || || ||| Sbjct: 394 cttggtggcaaggacgccctcagagccttcaaggaatctgatgagaagggttatcttgaa 453 Query: 504 gtcgagaccgaggggctgaagcagctcacgtccatgggcagcctggtgctctgctgcggc 563 ||||||||||| ||| | |||||||||||||||||||| ||||| || || ||||| || Sbjct: 454 gtcgagaccgaagggttaaagcagctcacgtccatgggtagccttgtactgtgctgtgga 513 Query: 564 gatggcgccgtcatgaactccaccaacctggggctgctgaggcatggagtctccatctgg 623 ||||||||||| |||||||| ||||| || ||||||||||||||||| |||||||| ||| Sbjct: 514 gatggcgccgttatgaactcaaccaatctagggctgctgaggcatggtgtctccatttgg 573 Query: 624 atcgacgtcccgcttgaattagccgtgaatgacatgttgaagagcaagggggcggcagct 683 || || || || |||||| | || | ||||||||||||||||||| ||| | |||| Sbjct: 574 attgatgttcctcttgaaatggcagcaaatgacatgttgaagagcacgggaacacaagct 633 Query: 684 atttcagaccctgattccttttctcaggcaatggcaaagctccgtcagcgttatgatgat 743 | | |||| || || || ||||||||||| ||| |||||||||||||| |||||||| Sbjct: 634 actacagatccagactctttttctcaggcgatgagcaagctccgtcagcggtatgatgaa 693 Query: 744 ctgaaggagcgctatgcagtttctgatgttactgtttcactacagaatgtggcttctcag 803 ||||| |||||||||| ||||||||| ||||||||||| |||| ||||||||||||||| Sbjct: 694 ctgaaagagcgctatggggtttctgatattactgtttcagtacaaaatgtggcttctcag 753 Query: 804 ctaggctacagcagcatcgactctttgagcctggaggacatggtcgttgagattgtgagt 863 | || ||||| ||||| |||| ||| || |||||||||||| |||| || ||||| Sbjct: 754 cgggggtacagtagcattgacttggtgacgcttgaggacatggtccttgaaatcgtgagg 813 Query: 864 cggattgagaagctgatccaagcaaaggcaatgatggaagctgctgggaagcc 916 | || ||||||||||||| ||||||| |||||||||||||| |||||||| Sbjct: 814 caaatcgagaagctgatccgtgcaaaggagatgatggaagctgcagggaagcc 866
>ref|NM_001048285.1| Oryza sativa (japonica cultivar-group) Os01g0102600 (Os01g0102600) mRNA, complete cds Length = 1124 Score = 283 bits (143), Expect = 8e-73 Identities = 338/403 (83%) Strand = Plus / Plus Query: 264 gaggagctcaacccctccgtcgccctgctcaggaagaccgcggaggccgtcggcgatttc 323 |||||||| ||||| ||||| | ||||||||||| || ||||||||||| ||||||||| Sbjct: 202 gaggagcttaacccttccgttgagctgctcaggaaaactgcggaggccgttggcgatttc 261 Query: 324 aggaagacgcccatctacatcgtcgggacggactgcaatgccaagcgcaacatcgccaag 383 ||||| || ||||||||||||||||| || ||||| | ||||||||||||||| || ||| Sbjct: 262 aggaaaacacccatctacatcgtcggaaccgactgtactgccaagcgcaacattgcaaag 321 Query: 384 ctgctcgccaactccatcatttaccgctacctctgcagcgaggacctgctcgaggacgtc 443 || || ||||| |||||||| ||||||||||||||||| || || ||||| ||||| || Sbjct: 322 ctccttgccaattccatcatataccgctacctctgcagtgaagagctgctggaggatgtt 381 Query: 444 ctcggcggcaaggacgccctcgccgcgttccgggagtccgacgagaagggctacctcgaa 503 || || ||||| || |||||| || |||||||| |||||| || |||||||||||| Sbjct: 382 cttggaggcaaagatgccctcaatgctttccgggaatccgacctcaacggctacctcgaa 441 Query: 504 gtcgagaccgaggggctgaagcagctcacgtccatgggcagcctggtgctctgctgcggc 563 |||||||| || || ||||| |||||||| |||||||||||||| ||||| ||||| || Sbjct: 442 gtcgagactgaaggcctgaaacagctcacctccatgggcagcctcgtgctttgctgtggg 501 Query: 564 gatggcgccgtcatgaactccaccaacctggggctgctgaggcatggagtctccatctgg 623 ||||| || ||||||||||| ||||| || ||||| |||||||||||||||||||| ||| Sbjct: 502 gatggtgctgtcatgaactcaaccaatctagggctactgaggcatggagtctccatttgg 561 Query: 624 atcgacgtcccgcttgaattagccgtgaatgacatgttgaaga 666 || || | || || ||||| | |||||||| |||||||||| Sbjct: 562 attgatattcctctggaattggtggtgaatgatatgttgaaga 604 Score = 178 bits (90), Expect = 3e-41 Identities = 203/238 (85%), Gaps = 2/238 (0%) Strand = Plus / Plus Query: 680 agctatttcagaccctgattccttttctcaggcaatg-gcaaagctccgtcagcgttatg 738 ||||| |||||||||||||||||||||| |||||||| ||| || |||| ||||| | | Sbjct: 609 agctacttcagaccctgattccttttctgaggcaatgagcagag-tccgacagcgacacg 667 Query: 739 atgatctgaaggagcgctatgcagtttctgatgttactgtttcactacagaatgtggctt 798 |||| || || |||||||||| |||||||||| | ||||||||| |||| |||||||| | Sbjct: 668 atgaactaaaagagcgctatggagtttctgatataactgtttcagtacaaaatgtggcat 727 Query: 799 ctcagctaggctacagcagcatcgactctttgagcctggaggacatggtcgttgagattg 858 |||| || |||||||| ||||||||||| ||| ||| |||||||||||| ||||||||| Sbjct: 728 ctcaactgggctacagtagcatcgactcagtgaccctagaggacatggtccttgagattg 787 Query: 859 tgagtcggattgagaagctgatccaagcaaaggcaatgatggaagctgctgggaagcc 916 |||| | || |||| |||||||| ||| ||| | ||||||||||||||||||||||| Sbjct: 788 tgaggcaaatagagaggctgatccgagcgaagtcgatgatggaagctgctgggaagcc 845
>dbj|AK064812.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000E05, full insert sequence Length = 1125 Score = 283 bits (143), Expect = 8e-73 Identities = 338/403 (83%) Strand = Plus / Plus Query: 264 gaggagctcaacccctccgtcgccctgctcaggaagaccgcggaggccgtcggcgatttc 323 |||||||| ||||| ||||| | ||||||||||| || ||||||||||| ||||||||| Sbjct: 203 gaggagcttaacccttccgttgagctgctcaggaaaactgcggaggccgttggcgatttc 262 Query: 324 aggaagacgcccatctacatcgtcgggacggactgcaatgccaagcgcaacatcgccaag 383 ||||| || ||||||||||||||||| || ||||| | ||||||||||||||| || ||| Sbjct: 263 aggaaaacacccatctacatcgtcggaaccgactgtactgccaagcgcaacattgcaaag 322 Query: 384 ctgctcgccaactccatcatttaccgctacctctgcagcgaggacctgctcgaggacgtc 443 || || ||||| |||||||| ||||||||||||||||| || || ||||| ||||| || Sbjct: 323 ctccttgccaattccatcatataccgctacctctgcagtgaagagctgctggaggatgtt 382 Query: 444 ctcggcggcaaggacgccctcgccgcgttccgggagtccgacgagaagggctacctcgaa 503 || || ||||| || |||||| || |||||||| |||||| || |||||||||||| Sbjct: 383 cttggaggcaaagatgccctcaatgctttccgggaatccgacctcaacggctacctcgaa 442 Query: 504 gtcgagaccgaggggctgaagcagctcacgtccatgggcagcctggtgctctgctgcggc 563 |||||||| || || ||||| |||||||| |||||||||||||| ||||| ||||| || Sbjct: 443 gtcgagactgaaggcctgaaacagctcacctccatgggcagcctcgtgctttgctgtggg 502 Query: 564 gatggcgccgtcatgaactccaccaacctggggctgctgaggcatggagtctccatctgg 623 ||||| || ||||||||||| ||||| || ||||| |||||||||||||||||||| ||| Sbjct: 503 gatggtgctgtcatgaactcaaccaatctagggctactgaggcatggagtctccatttgg 562 Query: 624 atcgacgtcccgcttgaattagccgtgaatgacatgttgaaga 666 || || | || || ||||| | |||||||| |||||||||| Sbjct: 563 attgatattcctctggaattggtggtgaatgatatgttgaaga 605 Score = 178 bits (90), Expect = 3e-41 Identities = 203/238 (85%), Gaps = 2/238 (0%) Strand = Plus / Plus Query: 680 agctatttcagaccctgattccttttctcaggcaatg-gcaaagctccgtcagcgttatg 738 ||||| |||||||||||||||||||||| |||||||| ||| || |||| ||||| | | Sbjct: 610 agctacttcagaccctgattccttttctgaggcaatgagcagag-tccgacagcgacacg 668 Query: 739 atgatctgaaggagcgctatgcagtttctgatgttactgtttcactacagaatgtggctt 798 |||| || || |||||||||| |||||||||| | ||||||||| |||| |||||||| | Sbjct: 669 atgaactaaaagagcgctatggagtttctgatataactgtttcagtacaaaatgtggcat 728 Query: 799 ctcagctaggctacagcagcatcgactctttgagcctggaggacatggtcgttgagattg 858 |||| || |||||||| ||||||||||| ||| ||| |||||||||||| ||||||||| Sbjct: 729 ctcaactgggctacagtagcatcgactcagtgaccctagaggacatggtccttgagattg 788 Query: 859 tgagtcggattgagaagctgatccaagcaaaggcaatgatggaagctgctgggaagcc 916 |||| | || |||| |||||||| ||| ||| | ||||||||||||||||||||||| Sbjct: 789 tgaggcaaatagagaggctgatccgagcgaagtcgatgatggaagctgctgggaagcc 846
>dbj|AK062086.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-G05, full insert sequence Length = 456 Score = 151 bits (76), Expect = 7e-33 Identities = 186/220 (84%), Gaps = 2/220 (0%) Strand = Plus / Plus Query: 698 ttccttttctcaggcaatg-gcaaagctccgtcagcgttatgatgatctgaaggagcgct 756 |||||||||| |||||||| ||| || |||| ||||| | ||||| || || ||||||| Sbjct: 1 ttccttttctgaggcaatgagcagag-tccgacagcgacacgatgaactaaaagagcgct 59 Query: 757 atgcagtttctgatgttactgtttcactacagaatgtggcttctcagctaggctacagca 816 ||| |||||||||| | ||||||||| |||| |||||||| ||||| || |||||||| | Sbjct: 60 atggagtttctgatataactgtttcagtacaaaatgtggcatctcaactgggctacagta 119 Query: 817 gcatcgactctttgagcctggaggacatggtcgttgagattgtgagtcggattgagaagc 876 |||||||||| ||| ||| |||||||||||| ||||||||||||| | || |||| || Sbjct: 120 gcatcgactcagtgaccctagaggacatggtccttgagattgtgaggcaaatagagaggc 179 Query: 877 tgatccaagcaaaggcaatgatggaagctgctgggaagcc 916 |||||| ||| ||| | ||||||||||||||||||||||| Sbjct: 180 tgatccgagcgaagtcgatgatggaagctgctgggaagcc 219
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 95.6 bits (48), Expect = 4e-16 Identities = 123/148 (83%) Strand = Plus / Plus Query: 362 tgccaagcgcaacatcgccaagctgctcgccaactccatcatttaccgctacctctgcag 421 ||||||||||||||| || ||||| || ||||| |||||||| ||||||||||||||||| Sbjct: 145192 tgccaagcgcaacattgcaaagctccttgccaattccatcatataccgctacctctgcag 145251 Query: 422 cgaggacctgctcgaggacgtcctcggcggcaaggacgccctcgccgcgttccgggagtc 481 || || ||||| ||||| || || || ||||| || |||||| || |||||||| || Sbjct: 145252 tgaagagctgctggaggatgttcttggaggcaaagatgccctcaatgctttccgggaatc 145311 Query: 482 cgacgagaagggctacctcgaagtcgag 509 |||| || |||||||||||||||||| Sbjct: 145312 cgacctcaacggctacctcgaagtcgag 145339 Score = 71.9 bits (36), Expect = 5e-09 Identities = 51/56 (91%) Strand = Plus / Plus Query: 294 aggaagaccgcggaggccgtcggcgatttcaggaagacgcccatctacatcgtcgg 349 ||||| || ||||||||||| |||||||||||||| || ||||||||||||||||| Sbjct: 145028 aggaaaactgcggaggccgttggcgatttcaggaaaacacccatctacatcgtcgg 145083 Score = 69.9 bits (35), Expect = 2e-08 Identities = 62/71 (87%) Strand = Plus / Plus Query: 519 ctgaagcagctcacgtccatgggcagcctggtgctctgctgcggcgatggcgccgtcatg 578 ||||| |||||||| |||||||||||||| ||||| ||||| || ||||| || |||||| Sbjct: 145459 ctgaaacagctcacctccatgggcagcctcgtgctttgctgtggggatggtgctgtcatg 145518 Query: 579 aactccaccaa 589 ||||| ||||| Sbjct: 145519 aactcaaccaa 145529 Score = 58.0 bits (29), Expect = 8e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 790 atgtggcttctcagctaggctacagcagcatcgactctttgagcctggaggacatggtcg 849 ||||||| ||||| || |||||||| ||||||||||| ||| ||| |||||||||||| Sbjct: 146311 atgtggcatctcaactgggctacagtagcatcgactcagtgaccctagaggacatggtcc 146370 Query: 850 ttgag 854 ||||| Sbjct: 146371 ttgag 146375 Score = 56.0 bits (28), Expect = 3e-04 Identities = 55/64 (85%) Strand = Plus / Plus Query: 853 agattgtgagtcggattgagaagctgatccaagcaaaggcaatgatggaagctgctggga 912 |||||||||| | || |||| |||||||| ||| ||| | ||||||||||||||||||| Sbjct: 146505 agattgtgaggcaaatagagaggctgatccgagcgaagtcgatgatggaagctgctggga 146564 Query: 913 agcc 916 |||| Sbjct: 146565 agcc 146568 Score = 50.1 bits (25), Expect = 0.020 Identities = 61/73 (83%) Strand = Plus / Plus Query: 594 gggctgctgaggcatggagtctccatctggatcgacgtcccgcttgaattagccgtgaat 653 ||||| |||||||||||||||||||| ||||| || | || || ||||| | |||||| Sbjct: 145612 gggctactgaggcatggagtctccatttggattgatattcctctggaattggtggtgaat 145671 Query: 654 gacatgttgaaga 666 || |||||||||| Sbjct: 145672 gatatgttgaaga 145684 Score = 48.1 bits (24), Expect = 0.077 Identities = 27/28 (96%) Strand = Plus / Plus Query: 680 agctatttcagaccctgattccttttct 707 ||||| |||||||||||||||||||||| Sbjct: 145689 agctacttcagaccctgattccttttct 145716 Score = 48.1 bits (24), Expect = 0.077 Identities = 27/28 (96%) Strand = Plus / Minus Query: 431 gctcgaggacgtcctcggcggcaaggac 458 |||||| ||||||||||||||||||||| Sbjct: 21339016 gctcgacgacgtcctcggcggcaaggac 21338989
>dbj|AP003727.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0672D08 Length = 173729 Score = 95.6 bits (48), Expect = 4e-16 Identities = 123/148 (83%) Strand = Plus / Plus Query: 362 tgccaagcgcaacatcgccaagctgctcgccaactccatcatttaccgctacctctgcag 421 ||||||||||||||| || ||||| || ||||| |||||||| ||||||||||||||||| Sbjct: 142994 tgccaagcgcaacattgcaaagctccttgccaattccatcatataccgctacctctgcag 143053 Query: 422 cgaggacctgctcgaggacgtcctcggcggcaaggacgccctcgccgcgttccgggagtc 481 || || ||||| ||||| || || || ||||| || |||||| || |||||||| || Sbjct: 143054 tgaagagctgctggaggatgttcttggaggcaaagatgccctcaatgctttccgggaatc 143113 Query: 482 cgacgagaagggctacctcgaagtcgag 509 |||| || |||||||||||||||||| Sbjct: 143114 cgacctcaacggctacctcgaagtcgag 143141 Score = 71.9 bits (36), Expect = 5e-09 Identities = 51/56 (91%) Strand = Plus / Plus Query: 294 aggaagaccgcggaggccgtcggcgatttcaggaagacgcccatctacatcgtcgg 349 ||||| || ||||||||||| |||||||||||||| || ||||||||||||||||| Sbjct: 142830 aggaaaactgcggaggccgttggcgatttcaggaaaacacccatctacatcgtcgg 142885 Score = 69.9 bits (35), Expect = 2e-08 Identities = 62/71 (87%) Strand = Plus / Plus Query: 519 ctgaagcagctcacgtccatgggcagcctggtgctctgctgcggcgatggcgccgtcatg 578 ||||| |||||||| |||||||||||||| ||||| ||||| || ||||| || |||||| Sbjct: 143261 ctgaaacagctcacctccatgggcagcctcgtgctttgctgtggggatggtgctgtcatg 143320 Query: 579 aactccaccaa 589 ||||| ||||| Sbjct: 143321 aactcaaccaa 143331 Score = 58.0 bits (29), Expect = 8e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 790 atgtggcttctcagctaggctacagcagcatcgactctttgagcctggaggacatggtcg 849 ||||||| ||||| || |||||||| ||||||||||| ||| ||| |||||||||||| Sbjct: 144113 atgtggcatctcaactgggctacagtagcatcgactcagtgaccctagaggacatggtcc 144172 Query: 850 ttgag 854 ||||| Sbjct: 144173 ttgag 144177 Score = 56.0 bits (28), Expect = 3e-04 Identities = 55/64 (85%) Strand = Plus / Plus Query: 853 agattgtgagtcggattgagaagctgatccaagcaaaggcaatgatggaagctgctggga 912 |||||||||| | || |||| |||||||| ||| ||| | ||||||||||||||||||| Sbjct: 144307 agattgtgaggcaaatagagaggctgatccgagcgaagtcgatgatggaagctgctggga 144366 Query: 913 agcc 916 |||| Sbjct: 144367 agcc 144370 Score = 50.1 bits (25), Expect = 0.020 Identities = 61/73 (83%) Strand = Plus / Plus Query: 594 gggctgctgaggcatggagtctccatctggatcgacgtcccgcttgaattagccgtgaat 653 ||||| |||||||||||||||||||| ||||| || | || || ||||| | |||||| Sbjct: 143414 gggctactgaggcatggagtctccatttggattgatattcctctggaattggtggtgaat 143473 Query: 654 gacatgttgaaga 666 || |||||||||| Sbjct: 143474 gatatgttgaaga 143486 Score = 48.1 bits (24), Expect = 0.077 Identities = 27/28 (96%) Strand = Plus / Plus Query: 680 agctatttcagaccctgattccttttct 707 ||||| |||||||||||||||||||||| Sbjct: 143491 agctacttcagaccctgattccttttct 143518
>dbj|AP002969.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0455C04 Length = 147940 Score = 95.6 bits (48), Expect = 4e-16 Identities = 123/148 (83%) Strand = Plus / Plus Query: 362 tgccaagcgcaacatcgccaagctgctcgccaactccatcatttaccgctacctctgcag 421 ||||||||||||||| || ||||| || ||||| |||||||| ||||||||||||||||| Sbjct: 93738 tgccaagcgcaacattgcaaagctccttgccaattccatcatataccgctacctctgcag 93797 Query: 422 cgaggacctgctcgaggacgtcctcggcggcaaggacgccctcgccgcgttccgggagtc 481 || || ||||| ||||| || || || ||||| || |||||| || |||||||| || Sbjct: 93798 tgaagagctgctggaggatgttcttggaggcaaagatgccctcaatgctttccgggaatc 93857 Query: 482 cgacgagaagggctacctcgaagtcgag 509 |||| || |||||||||||||||||| Sbjct: 93858 cgacctcaacggctacctcgaagtcgag 93885 Score = 71.9 bits (36), Expect = 5e-09 Identities = 51/56 (91%) Strand = Plus / Plus Query: 294 aggaagaccgcggaggccgtcggcgatttcaggaagacgcccatctacatcgtcgg 349 ||||| || ||||||||||| |||||||||||||| || ||||||||||||||||| Sbjct: 93574 aggaaaactgcggaggccgttggcgatttcaggaaaacacccatctacatcgtcgg 93629 Score = 69.9 bits (35), Expect = 2e-08 Identities = 62/71 (87%) Strand = Plus / Plus Query: 519 ctgaagcagctcacgtccatgggcagcctggtgctctgctgcggcgatggcgccgtcatg 578 ||||| |||||||| |||||||||||||| ||||| ||||| || ||||| || |||||| Sbjct: 94005 ctgaaacagctcacctccatgggcagcctcgtgctttgctgtggggatggtgctgtcatg 94064 Query: 579 aactccaccaa 589 ||||| ||||| Sbjct: 94065 aactcaaccaa 94075 Score = 58.0 bits (29), Expect = 8e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 790 atgtggcttctcagctaggctacagcagcatcgactctttgagcctggaggacatggtcg 849 ||||||| ||||| || |||||||| ||||||||||| ||| ||| |||||||||||| Sbjct: 94857 atgtggcatctcaactgggctacagtagcatcgactcagtgaccctagaggacatggtcc 94916 Query: 850 ttgag 854 ||||| Sbjct: 94917 ttgag 94921 Score = 56.0 bits (28), Expect = 3e-04 Identities = 55/64 (85%) Strand = Plus / Plus Query: 853 agattgtgagtcggattgagaagctgatccaagcaaaggcaatgatggaagctgctggga 912 |||||||||| | || |||| |||||||| ||| ||| | ||||||||||||||||||| Sbjct: 95051 agattgtgaggcaaatagagaggctgatccgagcgaagtcgatgatggaagctgctggga 95110 Query: 913 agcc 916 |||| Sbjct: 95111 agcc 95114 Score = 50.1 bits (25), Expect = 0.020 Identities = 61/73 (83%) Strand = Plus / Plus Query: 594 gggctgctgaggcatggagtctccatctggatcgacgtcccgcttgaattagccgtgaat 653 ||||| |||||||||||||||||||| ||||| || | || || ||||| | |||||| Sbjct: 94158 gggctactgaggcatggagtctccatttggattgatattcctctggaattggtggtgaat 94217 Query: 654 gacatgttgaaga 666 || |||||||||| Sbjct: 94218 gatatgttgaaga 94230 Score = 48.1 bits (24), Expect = 0.077 Identities = 27/28 (96%) Strand = Plus / Plus Query: 680 agctatttcagaccctgattccttttct 707 ||||| |||||||||||||||||||||| Sbjct: 94235 agctacttcagaccctgattccttttct 94262
>dbj|AP003610.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0402A09 Length = 141966 Score = 95.6 bits (48), Expect = 4e-16 Identities = 123/148 (83%) Strand = Plus / Plus Query: 362 tgccaagcgcaacatcgccaagctgctcgccaactccatcatttaccgctacctctgcag 421 ||||||||||||||| || ||||| || ||||| |||||||| ||||||||||||||||| Sbjct: 130122 tgccaagcgcaacattgcaaagctccttgccaattccatcatataccgctacctctgcag 130181 Query: 422 cgaggacctgctcgaggacgtcctcggcggcaaggacgccctcgccgcgttccgggagtc 481 || || ||||| ||||| || || || ||||| || |||||| || |||||||| || Sbjct: 130182 tgaagagctgctggaggatgttcttggaggcaaagatgccctcaatgctttccgggaatc 130241 Query: 482 cgacgagaagggctacctcgaagtcgag 509 |||| || |||||||||||||||||| Sbjct: 130242 cgacctcaacggctacctcgaagtcgag 130269 Score = 71.9 bits (36), Expect = 5e-09 Identities = 51/56 (91%) Strand = Plus / Plus Query: 294 aggaagaccgcggaggccgtcggcgatttcaggaagacgcccatctacatcgtcgg 349 ||||| || ||||||||||| |||||||||||||| || ||||||||||||||||| Sbjct: 129958 aggaaaactgcggaggccgttggcgatttcaggaaaacacccatctacatcgtcgg 130013 Score = 69.9 bits (35), Expect = 2e-08 Identities = 62/71 (87%) Strand = Plus / Plus Query: 519 ctgaagcagctcacgtccatgggcagcctggtgctctgctgcggcgatggcgccgtcatg 578 ||||| |||||||| |||||||||||||| ||||| ||||| || ||||| || |||||| Sbjct: 130389 ctgaaacagctcacctccatgggcagcctcgtgctttgctgtggggatggtgctgtcatg 130448 Query: 579 aactccaccaa 589 ||||| ||||| Sbjct: 130449 aactcaaccaa 130459 Score = 58.0 bits (29), Expect = 8e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 790 atgtggcttctcagctaggctacagcagcatcgactctttgagcctggaggacatggtcg 849 ||||||| ||||| || |||||||| ||||||||||| ||| ||| |||||||||||| Sbjct: 131241 atgtggcatctcaactgggctacagtagcatcgactcagtgaccctagaggacatggtcc 131300 Query: 850 ttgag 854 ||||| Sbjct: 131301 ttgag 131305 Score = 56.0 bits (28), Expect = 3e-04 Identities = 55/64 (85%) Strand = Plus / Plus Query: 853 agattgtgagtcggattgagaagctgatccaagcaaaggcaatgatggaagctgctggga 912 |||||||||| | || |||| |||||||| ||| ||| | ||||||||||||||||||| Sbjct: 131435 agattgtgaggcaaatagagaggctgatccgagcgaagtcgatgatggaagctgctggga 131494 Query: 913 agcc 916 |||| Sbjct: 131495 agcc 131498 Score = 50.1 bits (25), Expect = 0.020 Identities = 61/73 (83%) Strand = Plus / Plus Query: 594 gggctgctgaggcatggagtctccatctggatcgacgtcccgcttgaattagccgtgaat 653 ||||| |||||||||||||||||||| ||||| || | || || ||||| | |||||| Sbjct: 130542 gggctactgaggcatggagtctccatttggattgatattcctctggaattggtggtgaat 130601 Query: 654 gacatgttgaaga 666 || |||||||||| Sbjct: 130602 gatatgttgaaga 130614 Score = 48.1 bits (24), Expect = 0.077 Identities = 27/28 (96%) Strand = Plus / Plus Query: 680 agctatttcagaccctgattccttttct 707 ||||| |||||||||||||||||||||| Sbjct: 130619 agctacttcagaccctgattccttttct 130646
>ref|NM_001049886.1| Oryza sativa (japonica cultivar-group) Os01g0561600 (Os01g0561600) mRNA, complete cds Length = 1938 Score = 48.1 bits (24), Expect = 0.077 Identities = 27/28 (96%) Strand = Plus / Plus Query: 431 gctcgaggacgtcctcggcggcaaggac 458 |||||| ||||||||||||||||||||| Sbjct: 1161 gctcgacgacgtcctcggcggcaaggac 1188
>dbj|AP003267.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0496H05 Length = 147817 Score = 48.1 bits (24), Expect = 0.077 Identities = 27/28 (96%) Strand = Plus / Minus Query: 431 gctcgaggacgtcctcggcggcaaggac 458 |||||| ||||||||||||||||||||| Sbjct: 60954 gctcgacgacgtcctcggcggcaaggac 60927
>dbj|AK069494.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023025F12, full insert sequence Length = 1939 Score = 48.1 bits (24), Expect = 0.077 Identities = 27/28 (96%) Strand = Plus / Plus Query: 431 gctcgaggacgtcctcggcggcaaggac 458 |||||| ||||||||||||||||||||| Sbjct: 1162 gctcgacgacgtcctcggcggcaaggac 1189
>ref|NM_177167.4| Mus musculus protein phosphatase 1E (PP2C domain containing) (Ppm1e), mRNA Length = 6315 Score = 46.1 bits (23), Expect = 0.31 Identities = 29/31 (93%) Strand = Plus / Minus Query: 45 ctcgccctccgtctccgtctccccctccacc 75 ||||||||||||| |||||||| |||||||| Sbjct: 376 ctcgccctccgtcgccgtctcctcctccacc 346
>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome Length = 3665893 Score = 46.1 bits (23), Expect = 0.31 Identities = 23/23 (100%) Strand = Plus / Plus Query: 446 cggcggcaaggacgccctcgccg 468 ||||||||||||||||||||||| Sbjct: 3291635 cggcggcaaggacgccctcgccg 3291657
>dbj|AK046962.1| Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:B930008A12 product:protein phosphatase 1E (PP2C domain containing), full insert sequence Length = 1820 Score = 46.1 bits (23), Expect = 0.31 Identities = 29/31 (93%) Strand = Plus / Minus Query: 45 ctcgccctccgtctccgtctccccctccacc 75 ||||||||||||| |||||||| |||||||| Sbjct: 431 ctcgccctccgtcgccgtctcctcctccacc 401
>dbj|AK053696.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched library, clone:E130208E03 product:protein phosphatase 1E (PP2C domain containing), full insert sequence Length = 2356 Score = 46.1 bits (23), Expect = 0.31 Identities = 29/31 (93%) Strand = Plus / Minus Query: 45 ctcgccctccgtctccgtctccccctccacc 75 ||||||||||||| |||||||| |||||||| Sbjct: 301 ctcgccctccgtcgccgtctcctcctccacc 271
>emb|AL596130.13| Mouse DNA sequence from clone RP23-209O5 on chromosome 11, complete sequence Length = 203000 Score = 46.1 bits (23), Expect = 0.31 Identities = 29/31 (93%) Strand = Plus / Plus Query: 45 ctcgccctccgtctccgtctccccctccacc 75 ||||||||||||| |||||||| |||||||| Sbjct: 173193 ctcgccctccgtcgccgtctcctcctccacc 173223
>dbj|AK122434.1| Mus musculus mRNA for mKIAA1072 protein Length = 5973 Score = 46.1 bits (23), Expect = 0.31 Identities = 29/31 (93%) Strand = Plus / Minus Query: 45 ctcgccctccgtctccgtctccccctccacc 75 ||||||||||||| |||||||| |||||||| Sbjct: 34 ctcgccctccgtcgccgtctcctcctccacc 4
>gb|AE014296.4| Drosophila melanogaster chromosome 3L, complete sequence Length = 24543557 Score = 44.1 bits (22), Expect = 1.2 Identities = 25/26 (96%) Strand = Plus / Minus Query: 50 cctccgtctccgtctccccctccacc 75 |||||||||||||||||| ||||||| Sbjct: 3397772 cctccgtctccgtctccctctccacc 3397747
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 44.1 bits (22), Expect = 1.2 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1 ggaagggcaatggcgatggcga 22 |||||||||||||||||||||| Sbjct: 1875750 ggaagggcaatggcgatggcga 1875729
>gb|AC007307.77| Mus musculus strain RIII clone mgsriii-p1_7 map 6, complete sequence Length = 83612 Score = 44.1 bits (22), Expect = 1.2 Identities = 22/22 (100%) Strand = Plus / Plus Query: 893 aatgatggaagctgctgggaag 914 |||||||||||||||||||||| Sbjct: 32249 aatgatggaagctgctgggaag 32270 Score = 44.1 bits (22), Expect = 1.2 Identities = 22/22 (100%) Strand = Plus / Plus Query: 893 aatgatggaagctgctgggaag 914 |||||||||||||||||||||| Sbjct: 62816 aatgatggaagctgctgggaag 62837
>gb|AC010018.6| Drosophila melanogaster 3L BAC RP98-17M19 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 172284 Score = 44.1 bits (22), Expect = 1.2 Identities = 25/26 (96%) Strand = Plus / Minus Query: 50 cctccgtctccgtctccccctccacc 75 |||||||||||||||||| ||||||| Sbjct: 117828 cctccgtctccgtctccctctccacc 117803
>gb|AC091206.3| Drosophila melanogaster 3L BAC RP98-19M9 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 178019 Score = 44.1 bits (22), Expect = 1.2 Identities = 25/26 (96%) Strand = Plus / Plus Query: 50 cctccgtctccgtctccccctccacc 75 |||||||||||||||||| ||||||| Sbjct: 8381 cctccgtctccgtctccctctccacc 8406
>gb|AC154257.2| Mus musculus BAC clone RP24-211E15 from chromosome 13, complete sequence Length = 152267 Score = 44.1 bits (22), Expect = 1.2 Identities = 28/30 (93%) Strand = Plus / Minus Query: 51 ctccgtctccgtctccccctccacctcccc 80 |||| ||||||||||||||||| ||||||| Sbjct: 87930 ctccctctccgtctccccctccccctcccc 87901
>emb|Z98745.1|HS29K1 Human DNA sequence from clone RP1-29K1 on chromosome 6p21.3-22.2. Contains the gene for KIAA0426 (C2H2 type zinc finger protein), the gene for a novel C2H2 type zinc finger protein, a COX11 (COX11 (yeast) homolog, cytochrome c oxidase assembly protein) pseudogene, the olfactory receptor 2E1 pseudogene OR2E1P, the 3' end of a glutathion peroxidase pseudogene, ESTs, STSs, GSS and three CpG islands, complete sequence Length = 128779 Score = 44.1 bits (22), Expect = 1.2 Identities = 28/30 (93%) Strand = Plus / Plus Query: 51 ctccgtctccgtctccccctccacctcccc 80 |||| ||||| ||||||||||||||||||| Sbjct: 120176 ctccctctccctctccccctccacctcccc 120205
>gb|AC005678.1|AC005678 Homo sapiens PAC clone RP11-569I24 from 7, complete sequence Length = 187543 Score = 44.1 bits (22), Expect = 1.2 Identities = 28/30 (93%) Strand = Plus / Plus Query: 51 ctccgtctccgtctccccctccacctcccc 80 |||| ||||| ||||||||||||||||||| Sbjct: 165209 ctccctctccctctccccctccacctcccc 165238
>ref|NM_001062127.1| Oryza sativa (japonica cultivar-group) Os05g0424000 (Os05g0424000) mRNA, complete cds Length = 1969 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 121 cgccatcaccgtcgcctccgc 141 ||||||||||||||||||||| Sbjct: 1512 cgccatcaccgtcgcctccgc 1532
>gb|AC189597.1| Brassica rapa subsp. pekinensis clone KBrH014E13, complete sequence Length = 101610 Score = 42.1 bits (21), Expect = 4.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 50 cctccgtctccgtctccccctccacctcc 78 |||||||||||| |||| ||||||||||| Sbjct: 18969 cctccgtctccgcctccgcctccacctcc 18997
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 42.1 bits (21), Expect = 4.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 27 ggcggcagcggccttcttctcgccc 51 |||||||||||||||||||| |||| Sbjct: 4254912 ggcggcagcggccttcttcttgccc 4254936
>gb|AC158909.6| Mus musculus chromosome 1, clone RP23-118K4, complete sequence Length = 218810 Score = 42.1 bits (21), Expect = 4.8 Identities = 33/37 (89%) Strand = Plus / Minus Query: 44 tctcgccctccgtctccgtctccccctccacctcccc 80 |||||| |||| ||||| ||||||||||| ||||||| Sbjct: 132075 tctcgctctccctctccctctccccctccccctcccc 132039
>gb|AC115070.9| Mus musculus chromosome 5, clone RP24-406N3, complete sequence Length = 148789 Score = 42.1 bits (21), Expect = 4.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 51 ctccgtctccgtctccccctccacctccc 79 |||||||||||||||| ||||| |||||| Sbjct: 126721 ctccgtctccgtctccgcctccgcctccc 126749
>gb|AC109595.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1212_B02, complete sequence Length = 125650 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 121 cgccatcaccgtcgcctccgc 141 ||||||||||||||||||||| Sbjct: 58620 cgccatcaccgtcgcctccgc 58640
>gb|BC074280.1| Xenopus laevis MGC84054 protein, mRNA (cDNA clone MGC:84054 IMAGE:6948136), complete cds Length = 4612 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 965 ttgatttcaatatttttgcga 985 ||||||||||||||||||||| Sbjct: 3594 ttgatttcaatatttttgcga 3574
>gb|AE007259.1| Sinorhizobium meliloti 1021 plasmid pSymA section 65 of 121 of the complete plasmid sequence Length = 10995 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 372 aacatcgccaagctgctcgcc 392 ||||||||||||||||||||| Sbjct: 4821 aacatcgccaagctgctcgcc 4801
>gb|AF228730.8| Homo sapiens chromosome 8 clones SCb-332a23, CTB-415D8 map p23.1, complete sequences Length = 295854 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 798 tctcagctaggctacagcagc 818 ||||||||||||||||||||| Sbjct: 110904 tctcagctaggctacagcagc 110924
>gb|AC125155.4| Mus musculus BAC clone RP24-380D9 from chromosome 6, complete sequence Length = 173003 Score = 42.1 bits (21), Expect = 4.8 Identities = 33/37 (89%) Strand = Plus / Minus Query: 44 tctcgccctccgtctccgtctccccctccacctcccc 80 |||| |||||| ||||| ||||||||||| ||||||| Sbjct: 49556 tctccccctccctctccctctccccctccccctcccc 49520 Score = 42.1 bits (21), Expect = 4.8 Identities = 33/37 (89%) Strand = Plus / Minus Query: 44 tctcgccctccgtctccgtctccccctccacctcccc 80 |||| |||||| ||||| ||||||||||| ||||||| Sbjct: 49652 tctccccctccctctccctctccccctccccctcccc 49616
>gb|AC002550.1|HUAC002550 Human Chromosome 16 BAC clone CIT987SK-A-101F10, complete sequence Length = 86156 Score = 42.1 bits (21), Expect = 4.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 51 ctccgtctccgtctccccctccacctccc 79 |||| ||||||||| |||||||||||||| Sbjct: 75762 ctccctctccgtcttcccctccacctccc 75734
>gb|AC110682.6| Rattus norvegicus 18 BAC CH230-197I20 (Children's Hospital Oakland Research Institute) complete sequence Length = 166696 Score = 42.1 bits (21), Expect = 4.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 52 tccgtctccgtctccccctccacctcccc 80 |||||||||| |||| ||||||||||||| Sbjct: 118588 tccgtctccgcctccgcctccacctcccc 118560
>gb|AC158923.4| Mus musculus chromosome 5, clone RP24-118B12, complete sequence Length = 167699 Score = 42.1 bits (21), Expect = 4.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 51 ctccgtctccgtctccccctccacctccc 79 |||||||||||||||| ||||| |||||| Sbjct: 105520 ctccgtctccgtctccgcctccgcctccc 105492
>gb|DQ360292.1| Mus musculus strain CAST/Ei C-X3-C chemokine receptor 1 (Cx3cr1), C-C motif chemokine receptor 8 (Ccr8), ribosomal protein SA (Rpsa), and myelin-associated oligodendrocytic basic protein (Mobp) genes, complete cds Length = 200011 Score = 42.1 bits (21), Expect = 4.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 44 tctcgccctccgtctccgtctccccctcc 72 |||| ||||||||||||||||||| |||| Sbjct: 36748 tctctccctccgtctccgtctccctctcc 36776
>gb|AY838877.1| Aspergillus fumigatus putative gliotoxin biosynthetic gene cluster, complete sequence Length = 27768 Score = 42.1 bits (21), Expect = 4.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 368 gcgcaacatcgccaagctgctcgcc 392 |||||| |||||||||||||||||| Sbjct: 3346 gcgcaagatcgccaagctgctcgcc 3370
>ref|XM_745769.1| Aspergillus fumigatus Af293 cytochrome P450 (Afu6g09730) partial mRNA Length = 1515 Score = 42.1 bits (21), Expect = 4.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 368 gcgcaacatcgccaagctgctcgcc 392 |||||| |||||||||||||||||| Sbjct: 714 gcgcaagatcgccaagctgctcgcc 738
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 121 cgccatcaccgtcgcctccgc 141 ||||||||||||||||||||| Sbjct: 20636580 cgccatcaccgtcgcctccgc 20636600
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 120 ccgccatcaccgtcgcctccg 140 ||||||||||||||||||||| Sbjct: 4085577 ccgccatcaccgtcgcctccg 4085557 Score = 42.1 bits (21), Expect = 4.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 437 ggacgtcctcggcggcaaggacgccctcg 465 |||||||||||||||||| | |||||||| Sbjct: 4481680 ggacgtcctcggcggcaaagtcgccctcg 4481652
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 4.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 428 cctgctcgaggacgtcctcggcggc 452 ||||||||||| ||||||||||||| Sbjct: 3835103 cctgctcgaggtcgtcctcggcggc 3835127
>gb|AC167668.1| Mus musculus BAC clone RP24-241I19 from chromosome 14, complete sequence Length = 173679 Score = 42.1 bits (21), Expect = 4.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 56 tctccgtctccccctccacctcccc 80 ||||| ||||||||||||||||||| Sbjct: 143194 tctccctctccccctccacctcccc 143218
>gb|AC123718.9| Mus musculus chromosome 1, clone RP23-401A11, complete sequence Length = 225702 Score = 42.1 bits (21), Expect = 4.8 Identities = 33/37 (89%) Strand = Plus / Plus Query: 44 tctcgccctccgtctccgtctccccctccacctcccc 80 |||||| |||| ||||| ||||||||||| ||||||| Sbjct: 133071 tctcgctctccctctccctctccccctccccctcccc 133107
>dbj|AK065891.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013044D15, full insert sequence Length = 1975 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 121 cgccatcaccgtcgcctccgc 141 ||||||||||||||||||||| Sbjct: 1518 cgccatcaccgtcgcctccgc 1538
>gb|AC006427.13|AC006427 Homo sapiens chromosome 4 clone C0201M04, complete sequence Length = 178524 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1142 aatcaggagattatttttccc 1162 ||||||||||||||||||||| Sbjct: 11125 aatcaggagattatttttccc 11105
>gb|AY098511.1| Ananas comosus phenylalanine ammonia-lyase mRNA, partial cds Length = 1110 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 293 caggaagaccgcggaggccgt 313 ||||||||||||||||||||| Sbjct: 232 caggaagaccgcggaggccgt 252 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 202,851,026 Number of extensions: 11025615 Number of successful extensions: 271731 Number of sequences better than 10.0: 49 Number of HSP's gapped: 271725 Number of HSP's successfully gapped: 80 Length of query: 1258 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1235 Effective length of database: 18,503,978,556 Effective search space: 22852413516660 Effective search space used: 22852413516660 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
