>LOC_Os02g55390:12002.t05115:unspliced-genomic 60S ribosomal protein L39, putative, expressed|
Length = 777
Score = 85.4 bits (180), Expect(4) = 1e-28
Identities = 33/35 (94%), Positives = 34/35 (97%)
Frame = +3 / +2
Query: 75 PSHKTFRIKQKLAKKQRQNRPIPYWIRMRTDNTIR 179
PSHKTFRIK+KLAKK RQNRPIPYWIRMRTDNTIR
Sbjct: 176 PSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIR 280
Score = 45.5 bits (93), Expect(4) = 1e-28
Identities = 17/17 (100%), Positives = 17/17 (100%)
Frame = +3 / +2
Query: 177 RYNAKRRHWRRTKLGF* 227
RYNAKRRHWRRTKLGF*
Sbjct: 374 RYNAKRRHWRRTKLGF* 424
Score = 26.3 bits (51), Expect(4) = 1e-28
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +1 / +2
Query: 277 HFVLWTFHCL 306
HFVLW F CL
Sbjct: 482 HFVLWMFQCL 511
Score = 24.0 bits (46), Expect(4) = 1e-28
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +1 / +1
Query: 376 LLVLWCTDVTMLC 414
++VLW T+ TMLC
Sbjct: 571 VVVLWFTEDTMLC 609
Score = 77.6 bits (163), Expect(5) = 6e-27
Identities = 32/36 (88%), Positives = 33/36 (91%)
Frame = -3 / -1
Query: 181 YLMVLSVRMRIQ*GMGRFWRCFLASFCLMRKVLWDG 74
+LMVLSVRMRIQ*GMGRFWR F ASF LMRKVLWDG
Sbjct: 282 HLMVLSVRMRIQ*GMGRFWRIFFASFFLMRKVLWDG 175
Score = 41.8 bits (85), Expect(5) = 6e-27
Identities = 15/16 (93%), Positives = 16/16 (100%)
Frame = -1 / -2
Query: 222 TRAWCGASACASRCT* 175
T+AWCGASACASRCT*
Sbjct: 419 TQAWCGASACASRCT* 372
Score = 25.8 bits (50), Expect(5) = 6e-27
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = -2 / -2
Query: 413 HSMVTSVHQSTSKPSQHDEIHNKN 342
HSMV+SV+QST+ + + ++ K+
Sbjct: 608 HSMVSSVNQSTTTLNISENLNKKH 537
Score = 23.5 bits (45), Expect(5) = 6e-27
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -3 / -2
Query: 307 INSETSIKQN 278
IN+ETSIKQN
Sbjct: 512 INTETSIKQN 483
Score = 22.6 bits (43), Expect(5) = 6e-27
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = -2 / -2
Query: 74 HRRGGDED 51
HRRGGDE+
Sbjct: 74 HRRGGDEE 51
Score = 36.8 bits (74), Expect(4) = 9e-12
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +2 / +1
Query: 143 LLDPHADRQHHQV 181
LLDPHADRQHHQV
Sbjct: 244 LLDPHADRQHHQV 282
Score = 36.8 bits (74), Expect(4) = 9e-12
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = +2 / +1
Query: 176 QVQREAQALAPHQARVL 226
QVQREAQALAPHQA VL
Sbjct: 373 QVQREAQALAPHQAWVL 423
Score = 25.8 bits (50), Expect(4) = 9e-12
Identities = 8/12 (66%), Positives = 12/12 (100%)
Frame = +3 / +1
Query: 273 SAFCFMDVSLFI 308
++FCFMDVS+F+
Sbjct: 478 ASFCFMDVSVFM 513
Score = 22.6 bits (43), Expect(4) = 9e-12
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +3 / +3
Query: 378 ACTLVYRCYHAV 413
+CTLVY YHA+
Sbjct: 573 SCTLVY*GYHAM 608
Score = 40.9 bits (83), Expect(2) = 3e-07
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = -3 / -1
Query: 223 NPSLVRRQCLRFALYL 176
NPSLVRRQCLRFALYL
Sbjct: 420 NPSLVRRQCLRFALYL 373
Score = 32.7 bits (65), Expect(2) = 3e-07
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = -2 / -3
Query: 179 PDGVVGPHADP 147
PDGVVGPHADP
Sbjct: 280 PDGVVGPHADP 248
Score = 39.1 bits (79), Expect = 0.019
Identities = 15/17 (88%), Positives = 17/17 (100%)
Frame = -2 / -3
Query: 224 EPELGAAPVPALRVVPD 174
EP+LGAAPVPALRVVP+
Sbjct: 421 EPKLGAAPVPALRVVPE 371
>LOC_Os02g55370:12002.t05113:unspliced-genomic 60S ribosomal protein L39, putative, expressed|
Length = 642
Score = 85.4 bits (180), Expect(4) = 2e-28
Identities = 33/35 (94%), Positives = 34/35 (97%)
Frame = +3 / +3
Query: 75 PSHKTFRIKQKLAKKQRQNRPIPYWIRMRTDNTIR 179
PSHKTFRIK+KLAKK RQNRPIPYWIRMRTDNTIR
Sbjct: 150 PSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIR 254
Score = 46.0 bits (94), Expect(4) = 2e-28
Identities = 18/21 (85%), Positives = 18/21 (85%)
Frame = +3 / +1
Query: 177 RYNAKRRHWRRTKLGF*IRTG 239
RYNAKRRHWRRTKLGF* G
Sbjct: 364 RYNAKRRHWRRTKLGF*AGGG 426
Score = 24.9 bits (48), Expect(4) = 2e-28
Identities = 8/10 (80%), Positives = 10/10 (100%)
Frame = +3 / +2
Query: 279 FCFMDVSLFI 308
FCFMDVS+F+
Sbjct: 446 FCFMDVSVFM 475
Score = 24.0 bits (46), Expect(4) = 2e-28
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +1 / +2
Query: 376 LLVLWCTDVTMLC 414
++VLW T+ TMLC
Sbjct: 533 VVVLWFTEDTMLC 571
Score = 79.9 bits (168), Expect(4) = 3e-20
Identities = 35/47 (74%), Positives = 38/47 (80%)
Frame = -3 / -3
Query: 214 LVRRQCLRFALYLMVLSVRMRIQ*GMGRFWRCFLASFCLMRKVLWDG 74
L RR+ + +LMVLSVRMRIQ*GMGRFWR F ASF LMRKVLWDG
Sbjct: 289 LARRRGASKSNHLMVLSVRMRIQ*GMGRFWRIFFASFFLMRKVLWDG 149
Score = 25.8 bits (50), Expect(4) = 3e-20
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = -2 / -1
Query: 413 HSMVTSVHQSTSKPSQHDEIHNKN 342
HSMV+SV+QST+ + + ++ K+
Sbjct: 570 HSMVSSVNQSTTTLNISENLNKKH 499
Score = 23.5 bits (45), Expect(4) = 3e-20
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -3 / -1
Query: 307 INSETSIKQN 278
IN+ETSIKQN
Sbjct: 474 INTETSIKQN 445
Score = 22.6 bits (43), Expect(4) = 3e-20
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = -2 / -3
Query: 74 HRRGGDED 51
HRRGGDE+
Sbjct: 52 HRRGGDEE 29
Score = 36.8 bits (74), Expect(3) = 7e-08
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +2 / +2
Query: 143 LLDPHADRQHHQV 181
LLDPHADRQHHQV
Sbjct: 218 LLDPHADRQHHQV 256
Score = 32.7 bits (65), Expect(3) = 7e-08
Identities = 15/17 (88%), Positives = 15/17 (88%)
Frame = +2 / +3
Query: 176 QVQREAQALAPHQARVL 226
QV REAQALAPHQA VL
Sbjct: 363 QV*REAQALAPHQAWVL 413
Score = 22.6 bits (43), Expect(3) = 7e-08
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +1 / +3
Query: 280 FVLWTFHCL 306
FVLW F CL
Sbjct: 447 FVLWMFQCL 473
Score = 40.9 bits (83), Expect(2) = 3e-07
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = -3 / -2
Query: 223 NPSLVRRQCLRFALYL 176
NPSLVRRQCLRFALYL
Sbjct: 410 NPSLVRRQCLRFALYL 363
Score = 32.7 bits (65), Expect(2) = 3e-07
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = -2 / -2
Query: 179 PDGVVGPHADP 147
PDGVVGPHADP
Sbjct: 254 PDGVVGPHADP 222
Score = 38.6 bits (78), Expect = 0.026
Identities = 14/17 (82%), Positives = 17/17 (100%)
Frame = -2 / -1
Query: 224 EPELGAAPVPALRVVPD 174
EP+LGAAPVPALRV+P+
Sbjct: 411 EPKLGAAPVPALRVIPE 361
Score = 36.8 bits (74), Expect = 0.093
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = -1 / -3
Query: 222 TRAWCGASACASRCT* 175
T+AWCGASACASR T*
Sbjct: 409 TQAWCGASACASRYT* 362
>LOC_Os06g08320:12006.t00713:unspliced-genomic 60S ribosomal protein L39, putative, expressed|
Length = 686
Score = 85.4 bits (180), Expect(2) = 2e-24
Identities = 32/41 (78%), Positives = 36/41 (87%)
Frame = +3 / +1
Query: 57 VSAATMPSHKTFRIKQKLAKKQRQNRPIPYWIRMRTDNTIR 179
+ + PSHKTF+IK+KLAKK RQNRPIPYWIRMRTDNTIR
Sbjct: 115 IGCSAQPSHKTFQIKKKLAKKMRQNRPIPYWIRMRTDNTIR 237
Score = 46.4 bits (95), Expect(2) = 2e-24
Identities = 19/29 (65%), Positives = 20/29 (68%)
Frame = +3 / +3
Query: 171 TIRYNAKRRHWRRTKLGF*IRTGRRVGEP 257
+ RYNAKRRHWRRTKLGF* G P
Sbjct: 324 SFRYNAKRRHWRRTKLGF*AWGGEEDEAP 410
Score = 63.8 bits (133), Expect(2) = 4e-18
Identities = 28/36 (77%), Positives = 29/36 (80%)
Frame = -3 / -1
Query: 181 YLMVLSVRMRIQ*GMGRFWRCFLASFCLMRKVLWDG 74
YLMVLSVRMRIQ GMGRFWR F ASF L+ VL DG
Sbjct: 239 YLMVLSVRMRIQYGMGRFWRIFFASFFLIWNVLCDG 132
Score = 46.4 bits (95), Expect(2) = 4e-18
Identities = 18/23 (78%), Positives = 20/23 (86%)
Frame = -2 / -1
Query: 239 AGPDLEPELGAAPVPALRVVPDG 171
+ P EPELGAAPVPALRVVP+G
Sbjct: 392 SSPSSEPELGAAPVPALRVVPEG 324
Score = 43.7 bits (89), Expect(2) = 2e-07
Identities = 18/27 (66%), Positives = 21/27 (77%)
Frame = -3 / -2
Query: 256 GSPTRRPVRI*NPSLVRRQCLRFALYL 176
G+ + P + NPSLVRRQCLRFALYL
Sbjct: 409 GASSSSPPQAQNPSLVRRQCLRFALYL 329
Score = 30.4 bits (60), Expect(2) = 2e-07
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = -2 / -3
Query: 188 RVVPDGVVGPHADP 147
R +PDGVVG HADP
Sbjct: 246 RRLPDGVVGAHADP 205
Score = 43.7 bits (89), Expect = 8e-04
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = -1 / -3
Query: 222 TRAWCGASACASRCT* 175
TRAWCGASACASRCT*
Sbjct: 375 TRAWCGASACASRCT* 328
Score = 41.8 bits (85), Expect = 0.003
Identities = 20/27 (74%), Positives = 20/27 (74%)
Frame = +2 / +2
Query: 176 QVQREAQALAPHQARVLDPDRPPRGGA 256
QVQREAQALAPHQARVL R GA
Sbjct: 329 QVQREAQALAPHQARVLSLGRRGGRGA 409
Score = 36.3 bits (73), Expect = 0.13
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = +2 / +3
Query: 143 LLDPHADRQHHQVQREAQALAP 208
+LDPHA RQHHQV AL P
Sbjct: 201 VLDPHAHRQHHQVTSAVAALNP 266
>LOC_Os03g26930:12003.t02374:unspliced-genomic lysosomal protective protein precursor, putative, expressed|
Length = 3430
Score = 29.0 bits (57), Expect(2) = 0.50
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2 / +3
Query: 329 WIPGCFCYEFRHVERVCLYSGVPMLPCCAK*RTFAISL 442
WI G + F V +CL+ LPC ++ ++SL
Sbjct: 1830 WIAGIWIQIFEQVTYICLHLKCNFLPCMISIKSPSLSL 1943
Score = 22.6 bits (43), Expect(2) = 0.50
Identities = 6/17 (35%), Positives = 12/17 (70%)
Frame = +1 / +2
Query: 271 YLHFVLWTFHCLSCKLS 321
Y+ ++ + FH L CK++
Sbjct: 1676 YIPYLAYLFHSLPCKVA 1726
>LOC_Os03g06700:12003.t00537:unspliced-genomic fatty acid elongase, putative, expressed|
Length = 4195
Score = 28.6 bits (56), Expect(2) = 1.9
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -2 / +1
Query: 248 HAAAGPDLEPELGAAPVP 195
H AGP P +GAAPVP
Sbjct: 3646 HHDAGPPRAPAVGAAPVP 3699
Score = 24.9 bits (48), Expect(2) = 1.9
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -2 / +2
Query: 419 TWHSMVTSVHQSTSKPSQH 363
T+H++VTS S S+ +QH
Sbjct: 2930 TYHALVTSWFNSISEKNQH 2986
>LOC_Os12g35290:12012.t03217:unspliced-genomic conserved oligomeric Golgi complex component 8, putative, expressed|
Length = 6452
Score = 29.5 bits (58), Expect(2) = 2.0
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +3 / -1
Query: 129 NRPIPYWIRMRTDNTIRYNAKRRHWRRT 212
NR + IR N+IRY A R HW T
Sbjct: 5201 NRRRRHIIRSLIHNSIRYKANRWHWNPT 5118
Score = 24.4 bits (47), Expect(2) = 2.0
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +3 / -1
Query: 189 KRRHWRRTKLGF*IRTGRRVGEPW 260
+RR RR + R GRR G PW
Sbjct: 158 RRRRRRRRRRAPAWRGGRRRGRPW 87
>LOC_Os10g12140:12010.t01000:unspliced-genomic transposon protein, putative, unclassified|
Length = 4553
Score = 27.6 bits (54), Expect(2) = 2.7
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = +2 / +3
Query: 164 RQHHQVQREAQALAPHQARVLDPDRPPRGGAMVP 265
RQH +R + H+ R RPP G A P
Sbjct: 1677 RQHRAARRMRASRLQHRRRAFAVRRPPSGYAATP 1778
Score = 25.4 bits (49), Expect(2) = 2.7
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3 / +2
Query: 123 RQNRPIPYWIRMRTDN 170
R +PIPYW+R + N
Sbjct: 398 RFRKPIPYWLRFLSCN 445
>LOC_Os02g25560:12002.t02252:unspliced-genomic transposon protein, putative, CACTA, En/Spm sub-class|
Length = 3601
Score = 28.6 bits (56), Expect(2) = 9.5
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3 / +3
Query: 261 FQDLSAFCFMDVSLFIMQAKLGSGFQDVFVMNFVMLRGF 377
++ L FC M++ L K +GF D +N +ML+ +
Sbjct: 2622 YKFLLCFCRMEIQLCH*HNKFNTGFMDPHKVNTLMLQNY 2738
Score = 22.1 bits (42), Expect(2) = 9.5
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +2 / +3
Query: 206 PHQARVLDPDRPPRG 250
PHQ VL ++ PRG
Sbjct: 330 PHQHNVLASNKVPRG 374
Database: tigr.seq.out
Posted date: Jul 20, 2007 8:58 AM
Number of letters in database: 166,841,660
Number of sequences in database: 56,278
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 163,437,651
Number of extensions: 2554766
Number of successful extensions: 12386
Number of sequences better than 10.0: 38
Length of query: 154
Length of database: 55,613,886
Length adjustment: 47
Effective length of query: 107
Effective length of database: 52,968,820
Effective search space: 5667663740
Effective search space used: 5667663740
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)