ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf140n19 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001049328.1| Oryza sativa (japonica cultivar-group) Os01g0292900 (Os01g0292900) mRNA, complete cds Length = 2944 Score = 349 bits (176), Expect = 4e-92 Identities = 569/700 (81%) Strand = Plus / Plus Query: 1526 aattttgatctgaatgacacttatgtcgaggaagatgagagccgaacagataaaattgtc 1585 ||||||||| | ||||| ||||||| || | |||||||| ||||||||||||||||| Sbjct: 1031 aattttgatttaaatgatgcttatgtggaaggagatgagaatcgaacagataaaattgtg 1090 Query: 1586 tttaagctctttggtaaacagccaaatgattttcctgctgatctacgcacacaggtccta 1645 ||||| ||||| || ||| ||||||||||||||||| ||||| |||| | ||| |||| Sbjct: 1091 tttaaactcttcgggaaagagccaaatgattttccttctgatttacgtgctcagatcctc 1150 Query: 1646 aactggctgtcacattatccaagtgacatggagagctatattaggcctggttgtgtaatt 1705 | |||| |||| ||| |||||||| || ||||||||||| |||||||| ||| | || Sbjct: 1151 agctggttgtcgaattgcccaagtgatatagagagctatatcaggcctggctgtatcatc 1210 Query: 1706 ctaactatttaccttcgtcttcctaactggatgtggcataagcttaatgtcgatccagct 1765 |||||||||||| | || || ||||| ||||||||| |||||||| || ||| |||||| Sbjct: 1211 ctaactatttacatgcgcctccctaattggatgtgggataagcttgctgccgacccagct 1270 Query: 1766 ccttggatagaaaatcttattagcatatccactcatggtttctgggagacaggatggttg 1825 | |||||| | || || |||||| | |||||| || || ||| ||||||||| || Sbjct: 1271 cactggatacagaagctaattagcttgtccactgataccttgtggagaacaggatggatg 1330 Query: 1826 tatgctagggtgcaggaccgcctgacattaagctgcaatggcaggcttacgttggtgtgt 1885 ||||| |||||||||||| ||||||||| || ||||| || | |||| ||| | || | Sbjct: 1331 tatgcaagggtgcaggactacctgacattgagttgcaacggtaatcttatgttagcgtct 1390 Query: 1886 ccatggctacctgtaataggtgacaagcatcagatactgtgtgtaactcccattgcggct 1945 || |||| |||| |||||| |||||||||||||| ||| | |||| || ||||| | | Sbjct: 1391 ccctggcagcctgcaataggcaacaagcatcagatattgtttataacccctattgcagtt 1450 Query: 1946 tcttgtaagtcgacggcaaacttctcagtgagaggcttcaacatagctcaaccaaccaca 2005 ||||| || || |||||||||||||||| ||| ||||||||||||||||||||||| Sbjct: 1451 gcttgttcttcaacagcaaacttctcagtgaaaggtctcaacatagctcaaccaaccaca 1510 Query: 2006 aaattactttgtatatttggtgggaaatatttggtccaagaagcaacacaaaaactacac 2065 ||||||||||| || ||||||||||| ||| | |||||||||||||| |||| |||| Sbjct: 1511 aaattactttgcatttttggtgggaagtatctaatccaagaagcaacagaaaagctactt 1570 Query: 2066 gatgatactgcggttcagcaagggcctcaatgtctggccttttcttgctccttccctagt 2125 ||||||||| | |||| ||| ||||| |||||| |||| ||||||||||| |||||| Sbjct: 1571 gatgatactaaaatgcagcgaggccctcagtgtctgaccttctcttgctcctttcctagt 1630 Query: 2126 acaagtggaagggggttcatagaggttgaagattatgatcagagcagcatttcatttccc 2185 || |||||||| || |||||||||||||||||| |||||| |||||| ||||||||||| Sbjct: 1631 actagtggaagaggattcatagaggttgaagatcttgatcaaagcagcctttcatttccc 1690 Query: 2186 ttcgttgtcgctgaagaatctatatgttgtgagattcgaa 2225 || ||||| ||||||||| | |||||| ||| ||||||| Sbjct: 1691 tttgttgttgctgaagaagatgtatgttctgaaattcgaa 1730 Score = 194 bits (98), Expect = 1e-45 Identities = 224/266 (84%) Strand = Plus / Plus Query: 2645 ccagctcggttcgtattcacgcctgacatgactggtccatcagatattacacctctccat 2704 ||||||| |||| | || || |||||||| ||||||||||||||||||||||||| ||| Sbjct: 2150 ccagctcagttcttgtttacacctgacatagctggtccatcagatattacacctcttcat 2209 Query: 2705 agtgcagctaccatcagtaatgctgctgctgttttggatgctctaactgatgatcctcaa 2764 | |||||| || |||| || |||||| |||||| |||||| |||||||||||||||| Sbjct: 2210 attgcagccacatacagtgatactgctggtgttttagatgctttaactgatgatcctcag 2269 Query: 2765 cagctagggatcaaagcctggaagaatgcccgcgatgcgaccgggtacactccagaggat 2824 ||||| || |||||||| ||||||||||| |||||||| || || | ||||| |||||| Sbjct: 2270 cagctgggaatcaaagcatggaagaatgctcgcgatgctactggattgactccggaggat 2329 Query: 2825 tacgctcggaggagagggcacacatcctacatccagatggtccagaacaaaattaacagg 2884 |||||||||| |||||| ||| |||||||||| |||||||||||||||| ||| |||| Sbjct: 2330 tacgctcggaagagaggccacgaatcctacatcgagatggtccagaacaagattgacagc 2389 Query: 2885 gggttacctgcagcccatgtgtctgt 2910 ||||||| ||| ||||||||||| Sbjct: 2390 aggttacccaaagctcatgtgtctgt 2415 Score = 89.7 bits (45), Expect = 6e-14 Identities = 75/85 (88%) Strand = Plus / Plus Query: 1135 aggtttcaccttgttcaagaatttgatgaagggaagaagagctgccgctcacgtctagaa 1194 ||||||||| || ||||||||||||||||||| ||||||||||| |||||||| |||| | Sbjct: 605 aggtttcactttcttcaagaatttgatgaaggaaagaagagctgtcgctcacggctagca 664 Query: 1195 aaacataatgggaggaggaggaaag 1219 ||||||| | ||||||||||||| Sbjct: 665 caacataacagaaggaggaggaaag 689 Score = 71.9 bits (36), Expect = 1e-08 Identities = 84/100 (84%) Strand = Plus / Plus Query: 1340 tctgagcaaatcaatggtccgaatttcttggtcaatcttctgaagaaccttgctgctgtt 1399 |||||||||||||||||||| || | ||| ||||||| ||||||| ||||||||| || Sbjct: 800 tctgagcaaatcaatggtcctaactatttgaccaatcttgtgaagaatcttgctgctctt 859 Query: 1400 gctggcacacaggcatgtcaagatatgctaaaggatgcaa 1439 ||||| ||||| | |||||||||||||||| |||||| Sbjct: 860 gctggtacacaaagaaatcaagatatgctaaagaatgcaa 899 Score = 65.9 bits (33), Expect = 9e-07 Identities = 42/45 (93%) Strand = Plus / Plus Query: 612 caagaagaagggccacgagtgggatttgaacgactggagatggga 656 |||||||||||||| ||||||||||||||||| ||||||||||| Sbjct: 163 caagaagaagggcctggagtgggatttgaacgattggagatggga 207 Score = 65.9 bits (33), Expect = 9e-07 Identities = 75/89 (84%) Strand = Plus / Plus Query: 972 gaggcacaaggtgtgtgaggtgcacaccaagtcgactcttgttcgtataaaaaacataga 1031 |||||| ||||| ||||||||||| ||||||||| | ||||||||||||||| |||| Sbjct: 520 gaggcataaggtctgtgaggtgcataccaagtcgggagtggttcgtataaaaaacgtaga 579 Query: 1032 gcatcggttttgccagcagtgcagcaggt 1060 || ||||| || || ||||||||||||| Sbjct: 580 acaccggttctgtcaacagtgcagcaggt 608 Score = 63.9 bits (32), Expect = 4e-06 Identities = 71/84 (84%) Strand = Plus / Plus Query: 3059 aacaggttcttgtcgaacaggcctgcggtgctatccttggtcgccattgccgctgtctgc 3118 |||||||| |||| | |||||| || || || ||||||||||||||||| |||||||| Sbjct: 2585 aacaggtttctgtcaaccaggccagcagtactctccttggtcgccattgctgctgtctgt 2644 Query: 3119 gtctgcgtaggtttgataatgcag 3142 ||||| ||||| ||||| |||||| Sbjct: 2645 gtctgtgtagggttgatcatgcag 2668 Score = 61.9 bits (31), Expect = 1e-05 Identities = 79/95 (83%) Strand = Plus / Plus Query: 2402 tttcttgctgcaagatttagatggctcctgtcctttgcggtcgatcaggaatggtgcggc 2461 |||| ||||||||||||||||||| | ||||||||||| || |||| ||||| || | Sbjct: 1901 tttcctgctgcaagatttagatggttgctgtcctttgcagttgatcgggaattttgtgct 1960 Query: 2462 gtcgtaaagatgctgctggacaccttgttccaggg 2496 || |||||| ||| |||||||||||||| ||||| Sbjct: 1961 gttataaagaagcttctggacaccttgtttcaggg 1995
>dbj|AK068471.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155F18, full insert sequence Length = 3246 Score = 349 bits (176), Expect = 4e-92 Identities = 569/700 (81%) Strand = Plus / Plus Query: 1526 aattttgatctgaatgacacttatgtcgaggaagatgagagccgaacagataaaattgtc 1585 ||||||||| | ||||| ||||||| || | |||||||| ||||||||||||||||| Sbjct: 1237 aattttgatttaaatgatgcttatgtggaaggagatgagaatcgaacagataaaattgtg 1296 Query: 1586 tttaagctctttggtaaacagccaaatgattttcctgctgatctacgcacacaggtccta 1645 ||||| ||||| || ||| ||||||||||||||||| ||||| |||| | ||| |||| Sbjct: 1297 tttaaactcttcgggaaagagccaaatgattttccttctgatttacgtgctcagatcctc 1356 Query: 1646 aactggctgtcacattatccaagtgacatggagagctatattaggcctggttgtgtaatt 1705 | |||| |||| ||| |||||||| || ||||||||||| |||||||| ||| | || Sbjct: 1357 agctggttgtcgaattgcccaagtgatatagagagctatatcaggcctggctgtatcatc 1416 Query: 1706 ctaactatttaccttcgtcttcctaactggatgtggcataagcttaatgtcgatccagct 1765 |||||||||||| | || || ||||| ||||||||| |||||||| || ||| |||||| Sbjct: 1417 ctaactatttacatgcgcctccctaattggatgtgggataagcttgctgccgacccagct 1476 Query: 1766 ccttggatagaaaatcttattagcatatccactcatggtttctgggagacaggatggttg 1825 | |||||| | || || |||||| | |||||| || || ||| ||||||||| || Sbjct: 1477 cactggatacagaagctaattagcttgtccactgataccttgtggagaacaggatggatg 1536 Query: 1826 tatgctagggtgcaggaccgcctgacattaagctgcaatggcaggcttacgttggtgtgt 1885 ||||| |||||||||||| ||||||||| || ||||| || | |||| ||| | || | Sbjct: 1537 tatgcaagggtgcaggactacctgacattgagttgcaacggtaatcttatgttagcgtct 1596 Query: 1886 ccatggctacctgtaataggtgacaagcatcagatactgtgtgtaactcccattgcggct 1945 || |||| |||| |||||| |||||||||||||| ||| | |||| || ||||| | | Sbjct: 1597 ccctggcagcctgcaataggcaacaagcatcagatattgtttataacccctattgcagtt 1656 Query: 1946 tcttgtaagtcgacggcaaacttctcagtgagaggcttcaacatagctcaaccaaccaca 2005 ||||| || || |||||||||||||||| ||| ||||||||||||||||||||||| Sbjct: 1657 gcttgttcttcaacagcaaacttctcagtgaaaggtctcaacatagctcaaccaaccaca 1716 Query: 2006 aaattactttgtatatttggtgggaaatatttggtccaagaagcaacacaaaaactacac 2065 ||||||||||| || ||||||||||| ||| | |||||||||||||| |||| |||| Sbjct: 1717 aaattactttgcatttttggtgggaagtatctaatccaagaagcaacagaaaagctactt 1776 Query: 2066 gatgatactgcggttcagcaagggcctcaatgtctggccttttcttgctccttccctagt 2125 ||||||||| | |||| ||| ||||| |||||| |||| ||||||||||| |||||| Sbjct: 1777 gatgatactaaaatgcagcgaggccctcagtgtctgaccttctcttgctcctttcctagt 1836 Query: 2126 acaagtggaagggggttcatagaggttgaagattatgatcagagcagcatttcatttccc 2185 || |||||||| || |||||||||||||||||| |||||| |||||| ||||||||||| Sbjct: 1837 actagtggaagaggattcatagaggttgaagatcttgatcaaagcagcctttcatttccc 1896 Query: 2186 ttcgttgtcgctgaagaatctatatgttgtgagattcgaa 2225 || ||||| ||||||||| | |||||| ||| ||||||| Sbjct: 1897 tttgttgttgctgaagaagatgtatgttctgaaattcgaa 1936 Score = 194 bits (98), Expect = 1e-45 Identities = 224/266 (84%) Strand = Plus / Plus Query: 2645 ccagctcggttcgtattcacgcctgacatgactggtccatcagatattacacctctccat 2704 ||||||| |||| | || || |||||||| ||||||||||||||||||||||||| ||| Sbjct: 2356 ccagctcagttcttgtttacacctgacatagctggtccatcagatattacacctcttcat 2415 Query: 2705 agtgcagctaccatcagtaatgctgctgctgttttggatgctctaactgatgatcctcaa 2764 | |||||| || |||| || |||||| |||||| |||||| |||||||||||||||| Sbjct: 2416 attgcagccacatacagtgatactgctggtgttttagatgctttaactgatgatcctcag 2475 Query: 2765 cagctagggatcaaagcctggaagaatgcccgcgatgcgaccgggtacactccagaggat 2824 ||||| || |||||||| ||||||||||| |||||||| || || | ||||| |||||| Sbjct: 2476 cagctgggaatcaaagcatggaagaatgctcgcgatgctactggattgactccggaggat 2535 Query: 2825 tacgctcggaggagagggcacacatcctacatccagatggtccagaacaaaattaacagg 2884 |||||||||| |||||| ||| |||||||||| |||||||||||||||| ||| |||| Sbjct: 2536 tacgctcggaagagaggccacgaatcctacatcgagatggtccagaacaagattgacagc 2595 Query: 2885 gggttacctgcagcccatgtgtctgt 2910 ||||||| ||| ||||||||||| Sbjct: 2596 aggttacccaaagctcatgtgtctgt 2621 Score = 89.7 bits (45), Expect = 6e-14 Identities = 75/85 (88%) Strand = Plus / Plus Query: 1135 aggtttcaccttgttcaagaatttgatgaagggaagaagagctgccgctcacgtctagaa 1194 ||||||||| || ||||||||||||||||||| ||||||||||| |||||||| |||| | Sbjct: 811 aggtttcactttcttcaagaatttgatgaaggaaagaagagctgtcgctcacggctagca 870 Query: 1195 aaacataatgggaggaggaggaaag 1219 ||||||| | ||||||||||||| Sbjct: 871 caacataacagaaggaggaggaaag 895 Score = 71.9 bits (36), Expect = 1e-08 Identities = 84/100 (84%) Strand = Plus / Plus Query: 1340 tctgagcaaatcaatggtccgaatttcttggtcaatcttctgaagaaccttgctgctgtt 1399 |||||||||||||||||||| || | ||| ||||||| ||||||| ||||||||| || Sbjct: 1006 tctgagcaaatcaatggtcctaactatttgaccaatcttgtgaagaatcttgctgctctt 1065 Query: 1400 gctggcacacaggcatgtcaagatatgctaaaggatgcaa 1439 ||||| ||||| | |||||||||||||||| |||||| Sbjct: 1066 gctggtacacaaagaaatcaagatatgctaaagaatgcaa 1105 Score = 65.9 bits (33), Expect = 9e-07 Identities = 42/45 (93%) Strand = Plus / Plus Query: 612 caagaagaagggccacgagtgggatttgaacgactggagatggga 656 |||||||||||||| ||||||||||||||||| ||||||||||| Sbjct: 369 caagaagaagggcctggagtgggatttgaacgattggagatggga 413 Score = 65.9 bits (33), Expect = 9e-07 Identities = 75/89 (84%) Strand = Plus / Plus Query: 972 gaggcacaaggtgtgtgaggtgcacaccaagtcgactcttgttcgtataaaaaacataga 1031 |||||| ||||| ||||||||||| ||||||||| | ||||||||||||||| |||| Sbjct: 726 gaggcataaggtctgtgaggtgcataccaagtcgggagtggttcgtataaaaaacgtaga 785 Query: 1032 gcatcggttttgccagcagtgcagcaggt 1060 || ||||| || || ||||||||||||| Sbjct: 786 acaccggttctgtcaacagtgcagcaggt 814 Score = 63.9 bits (32), Expect = 4e-06 Identities = 71/84 (84%) Strand = Plus / Plus Query: 3059 aacaggttcttgtcgaacaggcctgcggtgctatccttggtcgccattgccgctgtctgc 3118 |||||||| |||| | |||||| || || || ||||||||||||||||| |||||||| Sbjct: 2791 aacaggtttctgtcaaccaggccagcagtactctccttggtcgccattgctgctgtctgt 2850 Query: 3119 gtctgcgtaggtttgataatgcag 3142 ||||| ||||| ||||| |||||| Sbjct: 2851 gtctgtgtagggttgatcatgcag 2874 Score = 61.9 bits (31), Expect = 1e-05 Identities = 79/95 (83%) Strand = Plus / Plus Query: 2402 tttcttgctgcaagatttagatggctcctgtcctttgcggtcgatcaggaatggtgcggc 2461 |||| ||||||||||||||||||| | ||||||||||| || |||| ||||| || | Sbjct: 2107 tttcctgctgcaagatttagatggttgctgtcctttgcagttgatcgggaattttgtgct 2166 Query: 2462 gtcgtaaagatgctgctggacaccttgttccaggg 2496 || |||||| ||| |||||||||||||| ||||| Sbjct: 2167 gttataaagaagcttctggacaccttgtttcaggg 2201
>dbj|AK072849.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023142C13, full insert sequence Length = 2945 Score = 341 bits (172), Expect = 1e-89 Identities = 568/700 (81%) Strand = Plus / Plus Query: 1526 aattttgatctgaatgacacttatgtcgaggaagatgagagccgaacagataaaattgtc 1585 ||||||||| | ||||| ||||||| || | |||||||| ||||||||||||||||| Sbjct: 1033 aattttgatttaaatgatgcttatgtggaaggagatgagaatcgaacagataaaattgtg 1092 Query: 1586 tttaagctctttggtaaacagccaaatgattttcctgctgatctacgcacacaggtccta 1645 ||||| ||||| || ||| ||||||||||||||||| ||||| |||| | ||| |||| Sbjct: 1093 tttaaactcttcgggaaagagccaaatgattttccttctgatttacgtgctcagatcctc 1152 Query: 1646 aactggctgtcacattatccaagtgacatggagagctatattaggcctggttgtgtaatt 1705 | |||| |||| ||| |||||||| || ||||||||||| |||||||| ||| | || Sbjct: 1153 agctggttgtcgaattgcccaagtgatatagagagctatatcaggcctggctgtatcatc 1212 Query: 1706 ctaactatttaccttcgtcttcctaactggatgtggcataagcttaatgtcgatccagct 1765 |||||||||||| | || || ||||| ||||||||| |||||||| || ||| |||||| Sbjct: 1213 ctaactatttacatgcgcctccctaattggatgtgggataagcttgctgccgacccagct 1272 Query: 1766 ccttggatagaaaatcttattagcatatccactcatggtttctgggagacaggatggttg 1825 | |||||| | || || |||||| | |||||| || || ||| ||||||||| || Sbjct: 1273 cactggatacagaagctaattagcttgtccactgataccttgtggagaacaggatggatg 1332 Query: 1826 tatgctagggtgcaggaccgcctgacattaagctgcaatggcaggcttacgttggtgtgt 1885 ||||| |||||||||||| ||||||||| || ||||| || | |||| ||| | || | Sbjct: 1333 tatgcaagggtgcaggactacctgacattgagttgcaacggtaatcttatgttagcgtct 1392 Query: 1886 ccatggctacctgtaataggtgacaagcatcagatactgtgtgtaactcccattgcggct 1945 || |||| |||| |||||| |||||||||||||| ||| | |||| || ||||| | | Sbjct: 1393 ccctggcagcctgcaataggcaacaagcatcagatattgtttataacccctattgcagtt 1452 Query: 1946 tcttgtaagtcgacggcaaacttctcagtgagaggcttcaacatagctcaaccaaccaca 2005 ||||| || || |||||||||||||||| ||| ||||||||||||||||||||||| Sbjct: 1453 gcttgttcttcaacagcaaacttctcagtgaaaggtctcaacatagctcaaccaaccaca 1512 Query: 2006 aaattactttgtatatttggtgggaaatatttggtccaagaagcaacacaaaaactacac 2065 ||||||||||| || ||||||||||| ||| | ||||||||| |||| |||| |||| Sbjct: 1513 aaattactttgcatttttggtgggaagtatctaatccaagaagtaacagaaaagctactt 1572 Query: 2066 gatgatactgcggttcagcaagggcctcaatgtctggccttttcttgctccttccctagt 2125 ||||||||| | |||| ||| ||||| |||||| |||| ||||||||||| |||||| Sbjct: 1573 gatgatactaaaatgcagcgaggccctcagtgtctgaccttctcttgctcctttcctagt 1632 Query: 2126 acaagtggaagggggttcatagaggttgaagattatgatcagagcagcatttcatttccc 2185 || |||||||| || |||||||||||||||||| |||||| |||||| ||||||||||| Sbjct: 1633 actagtggaagaggattcatagaggttgaagatcttgatcaaagcagcctttcatttccc 1692 Query: 2186 ttcgttgtcgctgaagaatctatatgttgtgagattcgaa 2225 || ||||| ||||||||| | |||||| ||| ||||||| Sbjct: 1693 tttgttgttgctgaagaagatgtatgttctgaaattcgaa 1732 Score = 194 bits (98), Expect = 1e-45 Identities = 224/266 (84%) Strand = Plus / Plus Query: 2645 ccagctcggttcgtattcacgcctgacatgactggtccatcagatattacacctctccat 2704 ||||||| |||| | || || |||||||| ||||||||||||||||||||||||| ||| Sbjct: 2152 ccagctcagttcttgtttacacctgacatagctggtccatcagatattacacctcttcat 2211 Query: 2705 agtgcagctaccatcagtaatgctgctgctgttttggatgctctaactgatgatcctcaa 2764 | |||||| || |||| || |||||| |||||| |||||| |||||||||||||||| Sbjct: 2212 attgcagccacatacagtgatactgctggtgttttagatgctttaactgatgatcctcag 2271 Query: 2765 cagctagggatcaaagcctggaagaatgcccgcgatgcgaccgggtacactccagaggat 2824 ||||| || |||||||| ||||||||||| |||||||| || || | ||||| |||||| Sbjct: 2272 cagctgggaatcaaagcatggaagaatgctcgcgatgctactggattgactccggaggat 2331 Query: 2825 tacgctcggaggagagggcacacatcctacatccagatggtccagaacaaaattaacagg 2884 |||||||||| |||||| ||| |||||||||| |||||||||||||||| ||| |||| Sbjct: 2332 tacgctcggaagagaggccacgaatcctacatcgagatggtccagaacaagattgacagc 2391 Query: 2885 gggttacctgcagcccatgtgtctgt 2910 ||||||| ||| ||||||||||| Sbjct: 2392 aggttacccaaagctcatgtgtctgt 2417 Score = 89.7 bits (45), Expect = 6e-14 Identities = 75/85 (88%) Strand = Plus / Plus Query: 1135 aggtttcaccttgttcaagaatttgatgaagggaagaagagctgccgctcacgtctagaa 1194 ||||||||| || ||||||||||||||||||| ||||||||||| |||||||| |||| | Sbjct: 607 aggtttcactttcttcaagaatttgatgaaggaaagaagagctgtcgctcacggctagca 666 Query: 1195 aaacataatgggaggaggaggaaag 1219 ||||||| | ||||||||||||| Sbjct: 667 caacataacagaaggaggaggaaag 691 Score = 71.9 bits (36), Expect = 1e-08 Identities = 84/100 (84%) Strand = Plus / Plus Query: 1340 tctgagcaaatcaatggtccgaatttcttggtcaatcttctgaagaaccttgctgctgtt 1399 |||||||||||||||||||| || | ||| ||||||| ||||||| ||||||||| || Sbjct: 802 tctgagcaaatcaatggtcctaactatttgaccaatcttgtgaagaatcttgctgctctt 861 Query: 1400 gctggcacacaggcatgtcaagatatgctaaaggatgcaa 1439 ||||| ||||| | |||||||||||||||| |||||| Sbjct: 862 gctggtacacaaagaaatcaagatatgctaaagaatgcaa 901 Score = 65.9 bits (33), Expect = 9e-07 Identities = 42/45 (93%) Strand = Plus / Plus Query: 612 caagaagaagggccacgagtgggatttgaacgactggagatggga 656 |||||||||||||| ||||||||||||||||| ||||||||||| Sbjct: 165 caagaagaagggcctggagtgggatttgaacgattggagatggga 209 Score = 65.9 bits (33), Expect = 9e-07 Identities = 75/89 (84%) Strand = Plus / Plus Query: 972 gaggcacaaggtgtgtgaggtgcacaccaagtcgactcttgttcgtataaaaaacataga 1031 |||||| ||||| ||||||||||| ||||||||| | ||||||||||||||| |||| Sbjct: 522 gaggcataaggtctgtgaggtgcataccaagtcgggagtggttcgtataaaaaacgtaga 581 Query: 1032 gcatcggttttgccagcagtgcagcaggt 1060 || ||||| || || ||||||||||||| Sbjct: 582 acaccggttctgtcaacagtgcagcaggt 610 Score = 63.9 bits (32), Expect = 4e-06 Identities = 71/84 (84%) Strand = Plus / Plus Query: 3059 aacaggttcttgtcgaacaggcctgcggtgctatccttggtcgccattgccgctgtctgc 3118 |||||||| |||| | |||||| || || || ||||||||||||||||| |||||||| Sbjct: 2587 aacaggtttctgtcaaccaggccagcagtactctccttggtcgccattgctgctgtctgt 2646 Query: 3119 gtctgcgtaggtttgataatgcag 3142 ||||| ||||| ||||| |||||| Sbjct: 2647 gtctgtgtagggttgatcatgcag 2670 Score = 61.9 bits (31), Expect = 1e-05 Identities = 79/95 (83%) Strand = Plus / Plus Query: 2402 tttcttgctgcaagatttagatggctcctgtcctttgcggtcgatcaggaatggtgcggc 2461 |||| ||||||||||||||||||| | ||||||||||| || |||| ||||| || | Sbjct: 1903 tttcctgctgcaagatttagatggttgctgtcctttgcagttgatcgggaattttgtgct 1962 Query: 2462 gtcgtaaagatgctgctggacaccttgttccaggg 2496 || |||||| ||| |||||||||||||| ||||| Sbjct: 1963 gttataaagaagcttctggacaccttgtttcaggg 1997
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 109 bits (55), Expect = 7e-20 Identities = 124/147 (84%) Strand = Plus / Plus Query: 2764 acagctagggatcaaagcctggaagaatgcccgcgatgcgaccgggtacactccagagga 2823 |||||| || |||||||| ||||||||||| |||||||| || || | ||||| ||||| Sbjct: 10654060 acagctgggaatcaaagcatggaagaatgctcgcgatgctactggattgactccggagga 10654119 Query: 2824 ttacgctcggaggagagggcacacatcctacatccagatggtccagaacaaaattaacag 2883 ||||||||||| |||||| ||| |||||||||| |||||||||||||||| ||| |||| Sbjct: 10654120 ttacgctcggaagagaggccacgaatcctacatcgagatggtccagaacaagattgacag 10654179 Query: 2884 ggggttacctgcagcccatgtgtctgt 2910 ||||||| ||| ||||||||||| Sbjct: 10654180 caggttacccaaagctcatgtgtctgt 10654206 Score = 95.6 bits (48), Expect = 1e-15 Identities = 120/144 (83%) Strand = Plus / Plus Query: 2008 attactttgtatatttggtgggaaatatttggtccaagaagcaacacaaaaactacacga 2067 ||||||||| || ||||||||||| ||| | |||||||||||||| |||| |||| || Sbjct: 10652867 attactttgcatttttggtgggaagtatctaatccaagaagcaacagaaaagctacttga 10652926 Query: 2068 tgatactgcggttcagcaagggcctcaatgtctggccttttcttgctccttccctagtac 2127 ||||||| | |||| ||| ||||| |||||| |||| ||||||||||| |||||||| Sbjct: 10652927 tgatactaaaatgcagcgaggccctcagtgtctgaccttctcttgctcctttcctagtac 10652986 Query: 2128 aagtggaagggggttcatagaggt 2151 |||||||| || ||||||||||| Sbjct: 10652987 tagtggaagaggattcatagaggt 10653010 Score = 93.7 bits (47), Expect = 4e-15 Identities = 101/119 (84%) Strand = Plus / Plus Query: 2645 ccagctcggttcgtattcacgcctgacatgactggtccatcagatattacacctctccat 2704 ||||||| |||| | || || |||||||| ||||||||||||||||||||||||| ||| Sbjct: 10653579 ccagctcagttcttgtttacacctgacatagctggtccatcagatattacacctcttcat 10653638 Query: 2705 agtgcagctaccatcagtaatgctgctgctgttttggatgctctaactgatgatcctca 2763 | |||||| || |||| || |||||| |||||| |||||| |||||||||||||||| Sbjct: 10653639 attgcagccacatacagtgatactgctggtgttttagatgctttaactgatgatcctca 10653697 Score = 89.7 bits (45), Expect = 6e-14 Identities = 75/85 (88%) Strand = Plus / Plus Query: 1135 aggtttcaccttgttcaagaatttgatgaagggaagaagagctgccgctcacgtctagaa 1194 ||||||||| || ||||||||||||||||||| ||||||||||| |||||||| |||| | Sbjct: 10651033 aggtttcactttcttcaagaatttgatgaaggaaagaagagctgtcgctcacggctagca 10651092 Query: 1195 aaacataatgggaggaggaggaaag 1219 ||||||| | ||||||||||||| Sbjct: 10651093 caacataacagaaggaggaggaaag 10651117 Score = 73.8 bits (37), Expect = 4e-09 Identities = 58/65 (89%) Strand = Plus / Plus Query: 1568 cgaacagataaaattgtctttaagctctttggtaaacagccaaatgattttcctgctgat 1627 ||||||||||||||||| ||||| ||||| || ||| ||||||||||||||||| ||||| Sbjct: 10651775 cgaacagataaaattgtgtttaaactcttcgggaaagagccaaatgattttccttctgat 10651834 Query: 1628 ctacg 1632 |||| Sbjct: 10651835 ttacg 10651839 Score = 73.8 bits (37), Expect = 4e-09 Identities = 94/113 (83%) Strand = Plus / Plus Query: 1895 cctgtaataggtgacaagcatcagatactgtgtgtaactcccattgcggcttcttgtaag 1954 |||| |||||| |||||||||||||| ||| | |||| || ||||| | | ||||| Sbjct: 10652681 cctgcaataggcaacaagcatcagatattgtttataacccctattgcagttgcttgttct 10652740 Query: 1955 tcgacggcaaacttctcagtgagaggcttcaacatagctcaaccaaccacaaa 2007 || || |||||||||||||||| ||| ||||||||||||||||||||||||| Sbjct: 10652741 tcaacagcaaacttctcagtgaaaggtctcaacatagctcaaccaaccacaaa 10652793 Score = 71.9 bits (36), Expect = 1e-08 Identities = 84/100 (84%) Strand = Plus / Plus Query: 1340 tctgagcaaatcaatggtccgaatttcttggtcaatcttctgaagaaccttgctgctgtt 1399 |||||||||||||||||||| || | ||| ||||||| ||||||| ||||||||| || Sbjct: 10651329 tctgagcaaatcaatggtcctaactatttgaccaatcttgtgaagaatcttgctgctctt 10651388 Query: 1400 gctggcacacaggcatgtcaagatatgctaaaggatgcaa 1439 ||||| ||||| | |||||||||||||||| |||||| Sbjct: 10651389 gctggtacacaaagaaatcaagatatgctaaagaatgcaa 10651428 Score = 67.9 bits (34), Expect = 2e-07 Identities = 67/78 (85%) Strand = Plus / Plus Query: 2148 aggttgaagattatgatcagagcagcatttcatttcccttcgttgtcgctgaagaatcta 2207 ||||||||||| |||||| |||||| ||||||||||||| ||||| ||||||||| | Sbjct: 10653082 aggttgaagatcttgatcaaagcagcctttcatttccctttgttgttgctgaagaagatg 10653141 Query: 2208 tatgttgtgagattcgaa 2225 |||||| ||| ||||||| Sbjct: 10653142 tatgttctgaaattcgaa 10653159 Score = 65.9 bits (33), Expect = 9e-07 Identities = 42/45 (93%) Strand = Plus / Plus Query: 612 caagaagaagggccacgagtgggatttgaacgactggagatggga 656 |||||||||||||| ||||||||||||||||| ||||||||||| Sbjct: 10649289 caagaagaagggcctggagtgggatttgaacgattggagatggga 10649333 Score = 65.9 bits (33), Expect = 9e-07 Identities = 75/89 (84%) Strand = Plus / Plus Query: 972 gaggcacaaggtgtgtgaggtgcacaccaagtcgactcttgttcgtataaaaaacataga 1031 |||||| ||||| ||||||||||| ||||||||| | ||||||||||||||| |||| Sbjct: 10649646 gaggcataaggtctgtgaggtgcataccaagtcgggagtggttcgtataaaaaacgtaga 10649705 Query: 1032 gcatcggttttgccagcagtgcagcaggt 1060 || ||||| || || ||||||||||||| Sbjct: 10649706 acaccggttctgtcaacagtgcagcaggt 10649734 Score = 63.9 bits (32), Expect = 4e-06 Identities = 71/84 (84%) Strand = Plus / Plus Query: 1664 ccaagtgacatggagagctatattaggcctggttgtgtaattctaactatttaccttcgt 1723 |||||||| || ||||||||||| |||||||| ||| | || |||||||||||| | || Sbjct: 10651985 ccaagtgatatagagagctatatcaggcctggctgtatcatcctaactatttacatgcgc 10652044 Query: 1724 cttcctaactggatgtggcataag 1747 || ||||| ||||||||| ||||| Sbjct: 10652045 ctccctaattggatgtgggataag 10652068 Score = 63.9 bits (32), Expect = 4e-06 Identities = 71/84 (84%) Strand = Plus / Plus Query: 3059 aacaggttcttgtcgaacaggcctgcggtgctatccttggtcgccattgccgctgtctgc 3118 |||||||| |||| | |||||| || || || ||||||||||||||||| |||||||| Sbjct: 10654376 aacaggtttctgtcaaccaggccagcagtactctccttggtcgccattgctgctgtctgt 10654435 Query: 3119 gtctgcgtaggtttgataatgcag 3142 ||||| ||||| ||||| |||||| Sbjct: 10654436 gtctgtgtagggttgatcatgcag 10654459 Score = 61.9 bits (31), Expect = 1e-05 Identities = 79/95 (83%) Strand = Plus / Plus Query: 2402 tttcttgctgcaagatttagatggctcctgtcctttgcggtcgatcaggaatggtgcggc 2461 |||| ||||||||||||||||||| | ||||||||||| || |||| ||||| || | Sbjct: 10653330 tttcctgctgcaagatttagatggttgctgtcctttgcagttgatcgggaattttgtgct 10653389 Query: 2462 gtcgtaaagatgctgctggacaccttgttccaggg 2496 || |||||| ||| |||||||||||||| ||||| Sbjct: 10653390 gttataaagaagcttctggacaccttgtttcaggg 10653424 Score = 52.0 bits (26), Expect = 0.014 Identities = 44/50 (88%) Strand = Plus / Plus Query: 1814 acaggatggttgtatgctagggtgcaggaccgcctgacattaagctgcaa 1863 ||||||||| ||||||| |||||||||||| ||||||||| || ||||| Sbjct: 10652479 acaggatggatgtatgcaagggtgcaggactacctgacattgagttgcaa 10652528
>dbj|AP002482.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0706B05 Length = 187835 Score = 109 bits (55), Expect = 7e-20 Identities = 124/147 (84%) Strand = Plus / Plus Query: 2764 acagctagggatcaaagcctggaagaatgcccgcgatgcgaccgggtacactccagagga 2823 |||||| || |||||||| ||||||||||| |||||||| || || | ||||| ||||| Sbjct: 148683 acagctgggaatcaaagcatggaagaatgctcgcgatgctactggattgactccggagga 148742 Query: 2824 ttacgctcggaggagagggcacacatcctacatccagatggtccagaacaaaattaacag 2883 ||||||||||| |||||| ||| |||||||||| |||||||||||||||| ||| |||| Sbjct: 148743 ttacgctcggaagagaggccacgaatcctacatcgagatggtccagaacaagattgacag 148802 Query: 2884 ggggttacctgcagcccatgtgtctgt 2910 ||||||| ||| ||||||||||| Sbjct: 148803 caggttacccaaagctcatgtgtctgt 148829 Score = 95.6 bits (48), Expect = 1e-15 Identities = 120/144 (83%) Strand = Plus / Plus Query: 2008 attactttgtatatttggtgggaaatatttggtccaagaagcaacacaaaaactacacga 2067 ||||||||| || ||||||||||| ||| | |||||||||||||| |||| |||| || Sbjct: 147490 attactttgcatttttggtgggaagtatctaatccaagaagcaacagaaaagctacttga 147549 Query: 2068 tgatactgcggttcagcaagggcctcaatgtctggccttttcttgctccttccctagtac 2127 ||||||| | |||| ||| ||||| |||||| |||| ||||||||||| |||||||| Sbjct: 147550 tgatactaaaatgcagcgaggccctcagtgtctgaccttctcttgctcctttcctagtac 147609 Query: 2128 aagtggaagggggttcatagaggt 2151 |||||||| || ||||||||||| Sbjct: 147610 tagtggaagaggattcatagaggt 147633 Score = 93.7 bits (47), Expect = 4e-15 Identities = 101/119 (84%) Strand = Plus / Plus Query: 2645 ccagctcggttcgtattcacgcctgacatgactggtccatcagatattacacctctccat 2704 ||||||| |||| | || || |||||||| ||||||||||||||||||||||||| ||| Sbjct: 148202 ccagctcagttcttgtttacacctgacatagctggtccatcagatattacacctcttcat 148261 Query: 2705 agtgcagctaccatcagtaatgctgctgctgttttggatgctctaactgatgatcctca 2763 | |||||| || |||| || |||||| |||||| |||||| |||||||||||||||| Sbjct: 148262 attgcagccacatacagtgatactgctggtgttttagatgctttaactgatgatcctca 148320 Score = 89.7 bits (45), Expect = 6e-14 Identities = 75/85 (88%) Strand = Plus / Plus Query: 1135 aggtttcaccttgttcaagaatttgatgaagggaagaagagctgccgctcacgtctagaa 1194 ||||||||| || ||||||||||||||||||| ||||||||||| |||||||| |||| | Sbjct: 145656 aggtttcactttcttcaagaatttgatgaaggaaagaagagctgtcgctcacggctagca 145715 Query: 1195 aaacataatgggaggaggaggaaag 1219 ||||||| | ||||||||||||| Sbjct: 145716 caacataacagaaggaggaggaaag 145740 Score = 73.8 bits (37), Expect = 4e-09 Identities = 58/65 (89%) Strand = Plus / Plus Query: 1568 cgaacagataaaattgtctttaagctctttggtaaacagccaaatgattttcctgctgat 1627 ||||||||||||||||| ||||| ||||| || ||| ||||||||||||||||| ||||| Sbjct: 146398 cgaacagataaaattgtgtttaaactcttcgggaaagagccaaatgattttccttctgat 146457 Query: 1628 ctacg 1632 |||| Sbjct: 146458 ttacg 146462 Score = 73.8 bits (37), Expect = 4e-09 Identities = 94/113 (83%) Strand = Plus / Plus Query: 1895 cctgtaataggtgacaagcatcagatactgtgtgtaactcccattgcggcttcttgtaag 1954 |||| |||||| |||||||||||||| ||| | |||| || ||||| | | ||||| Sbjct: 147304 cctgcaataggcaacaagcatcagatattgtttataacccctattgcagttgcttgttct 147363 Query: 1955 tcgacggcaaacttctcagtgagaggcttcaacatagctcaaccaaccacaaa 2007 || || |||||||||||||||| ||| ||||||||||||||||||||||||| Sbjct: 147364 tcaacagcaaacttctcagtgaaaggtctcaacatagctcaaccaaccacaaa 147416 Score = 71.9 bits (36), Expect = 1e-08 Identities = 84/100 (84%) Strand = Plus / Plus Query: 1340 tctgagcaaatcaatggtccgaatttcttggtcaatcttctgaagaaccttgctgctgtt 1399 |||||||||||||||||||| || | ||| ||||||| ||||||| ||||||||| || Sbjct: 145952 tctgagcaaatcaatggtcctaactatttgaccaatcttgtgaagaatcttgctgctctt 146011 Query: 1400 gctggcacacaggcatgtcaagatatgctaaaggatgcaa 1439 ||||| ||||| | |||||||||||||||| |||||| Sbjct: 146012 gctggtacacaaagaaatcaagatatgctaaagaatgcaa 146051 Score = 67.9 bits (34), Expect = 2e-07 Identities = 67/78 (85%) Strand = Plus / Plus Query: 2148 aggttgaagattatgatcagagcagcatttcatttcccttcgttgtcgctgaagaatcta 2207 ||||||||||| |||||| |||||| ||||||||||||| ||||| ||||||||| | Sbjct: 147705 aggttgaagatcttgatcaaagcagcctttcatttccctttgttgttgctgaagaagatg 147764 Query: 2208 tatgttgtgagattcgaa 2225 |||||| ||| ||||||| Sbjct: 147765 tatgttctgaaattcgaa 147782 Score = 65.9 bits (33), Expect = 9e-07 Identities = 42/45 (93%) Strand = Plus / Plus Query: 612 caagaagaagggccacgagtgggatttgaacgactggagatggga 656 |||||||||||||| ||||||||||||||||| ||||||||||| Sbjct: 143912 caagaagaagggcctggagtgggatttgaacgattggagatggga 143956 Score = 65.9 bits (33), Expect = 9e-07 Identities = 75/89 (84%) Strand = Plus / Plus Query: 972 gaggcacaaggtgtgtgaggtgcacaccaagtcgactcttgttcgtataaaaaacataga 1031 |||||| ||||| ||||||||||| ||||||||| | ||||||||||||||| |||| Sbjct: 144269 gaggcataaggtctgtgaggtgcataccaagtcgggagtggttcgtataaaaaacgtaga 144328 Query: 1032 gcatcggttttgccagcagtgcagcaggt 1060 || ||||| || || ||||||||||||| Sbjct: 144329 acaccggttctgtcaacagtgcagcaggt 144357 Score = 63.9 bits (32), Expect = 4e-06 Identities = 71/84 (84%) Strand = Plus / Plus Query: 1664 ccaagtgacatggagagctatattaggcctggttgtgtaattctaactatttaccttcgt 1723 |||||||| || ||||||||||| |||||||| ||| | || |||||||||||| | || Sbjct: 146608 ccaagtgatatagagagctatatcaggcctggctgtatcatcctaactatttacatgcgc 146667 Query: 1724 cttcctaactggatgtggcataag 1747 || ||||| ||||||||| ||||| Sbjct: 146668 ctccctaattggatgtgggataag 146691 Score = 63.9 bits (32), Expect = 4e-06 Identities = 71/84 (84%) Strand = Plus / Plus Query: 3059 aacaggttcttgtcgaacaggcctgcggtgctatccttggtcgccattgccgctgtctgc 3118 |||||||| |||| | |||||| || || || ||||||||||||||||| |||||||| Sbjct: 148999 aacaggtttctgtcaaccaggccagcagtactctccttggtcgccattgctgctgtctgt 149058 Query: 3119 gtctgcgtaggtttgataatgcag 3142 ||||| ||||| ||||| |||||| Sbjct: 149059 gtctgtgtagggttgatcatgcag 149082 Score = 61.9 bits (31), Expect = 1e-05 Identities = 79/95 (83%) Strand = Plus / Plus Query: 2402 tttcttgctgcaagatttagatggctcctgtcctttgcggtcgatcaggaatggtgcggc 2461 |||| ||||||||||||||||||| | ||||||||||| || |||| ||||| || | Sbjct: 147953 tttcctgctgcaagatttagatggttgctgtcctttgcagttgatcgggaattttgtgct 148012 Query: 2462 gtcgtaaagatgctgctggacaccttgttccaggg 2496 || |||||| ||| |||||||||||||| ||||| Sbjct: 148013 gttataaagaagcttctggacaccttgtttcaggg 148047 Score = 52.0 bits (26), Expect = 0.014 Identities = 44/50 (88%) Strand = Plus / Plus Query: 1814 acaggatggttgtatgctagggtgcaggaccgcctgacattaagctgcaa 1863 ||||||||| ||||||| |||||||||||| ||||||||| || ||||| Sbjct: 147102 acaggatggatgtatgcaagggtgcaggactacctgacattgagttgcaa 147151
>gb|AY109893.1| Zea mays CL8822_1 mRNA sequence Length = 1029 Score = 77.8 bits (39), Expect = 2e-10 Identities = 87/103 (84%) Strand = Plus / Minus Query: 2688 atattacacctctccatagtgcagctaccatcagtaatgctgctgctgttttggatgctc 2747 |||| |||||||| |||| |||||| || |||||| ||||| || |||||| |||||| Sbjct: 725 atatcacacctcttcatattgcagccacaatcagtgatgctattggtgttttagatgctt 666 Query: 2748 taactgatgatcctcaacagctagggatcaaagcctggaagaa 2790 |||||||||||||||| ||| | || |||||||| |||||||| Sbjct: 665 taactgatgatcctcagcagttgggaatcaaagcgtggaagaa 623 Score = 52.0 bits (26), Expect = 0.014 Identities = 56/66 (84%) Strand = Plus / Minus Query: 3081 ctgcggtgctatccttggtcgccattgccgctgtctgcgtctgcgtaggtttgataatgc 3140 ||||| |||| ||||||||| ||||||| || ||||||||||| || || ||||| ||| Sbjct: 314 ctgcgatgctttccttggtctccattgctgccgtctgcgtctgtgtgggattgatcatga 255 Query: 3141 agagcc 3146 |||||| Sbjct: 254 agagcc 249
>gb|AC094946.6| Rattus norvegicus BAC CH230-6C14 () complete sequence Length = 226407 Score = 50.1 bits (25), Expect = 0.054 Identities = 25/25 (100%) Strand = Plus / Plus Query: 2270 gaaggaagagaagatctgatggctt 2294 ||||||||||||||||||||||||| Sbjct: 199687 gaaggaagagaagatctgatggctt 199711
>gb|AC095504.7| Rattus norvegicus 2 BAC CH230-7P18 (Children's Hospital Oakland Research Institute) complete sequence Length = 227012 Score = 50.1 bits (25), Expect = 0.054 Identities = 25/25 (100%) Strand = Plus / Plus Query: 2270 gaaggaagagaagatctgatggctt 2294 ||||||||||||||||||||||||| Sbjct: 168754 gaaggaagagaagatctgatggctt 168778
>gb|AC150657.1| Pan troglodytes chromosome 8 clone PTB-123K23 map human ortholog p23.1, complete sequence Length = 173624 Score = 48.1 bits (24), Expect = 0.21 Identities = 24/24 (100%) Strand = Plus / Minus Query: 2273 ggaagagaagatctgatggcttct 2296 |||||||||||||||||||||||| Sbjct: 36634 ggaagagaagatctgatggcttct 36611
>gb|AC150656.1| Pan troglodytes chromosome 8 clone PTB-026H08 map human ortholog p23.1, complete sequence Length = 155351 Score = 48.1 bits (24), Expect = 0.21 Identities = 24/24 (100%) Strand = Plus / Minus Query: 2273 ggaagagaagatctgatggcttct 2296 |||||||||||||||||||||||| Sbjct: 21783 ggaagagaagatctgatggcttct 21760
>gb|AF451895.1| Zea mays LIGULELESS1 (lg1) gene, complete cds Length = 7142 Score = 48.1 bits (24), Expect = 0.21 Identities = 27/28 (96%) Strand = Plus / Plus Query: 1037 ggttttgccagcagtgcagcaggtcagt 1064 |||| ||||||||||||||||||||||| Sbjct: 4114 ggttctgccagcagtgcagcaggtcagt 4141
>emb|AJ011623.1|AMA011623 Antirrhinum majus mRNA for squamosa promoter binding protein-homologue 5, partial Length = 1223 Score = 48.1 bits (24), Expect = 0.21 Identities = 24/24 (100%) Strand = Plus / Plus Query: 1037 ggttttgccagcagtgcagcaggt 1060 |||||||||||||||||||||||| Sbjct: 230 ggttttgccagcagtgcagcaggt 253
>emb|AJ011622.1|AMA011622 Antirrhinum majus mRNA for squamosa promoter binding protein-homologue 4, partial Length = 1072 Score = 48.1 bits (24), Expect = 0.21 Identities = 24/24 (100%) Strand = Plus / Plus Query: 1037 ggttttgccagcagtgcagcaggt 1060 |||||||||||||||||||||||| Sbjct: 265 ggttttgccagcagtgcagcaggt 288
>emb|CR855135.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0158D24, complete sequence Length = 80390 Score = 46.1 bits (23), Expect = 0.85 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1042 tgccagcagtgcagcaggtcagt 1064 ||||||||||||||||||||||| Sbjct: 48946 tgccagcagtgcagcaggtcagt 48968
>ref|NM_001058343.1| Oryza sativa (japonica cultivar-group) Os03g0833300 (Os03g0833300) mRNA, complete cds Length = 3780 Score = 46.1 bits (23), Expect = 0.85 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1148 ttcaagaatttgatgaagggaag 1170 ||||||||||||||||||||||| Sbjct: 1038 ttcaagaatttgatgaagggaag 1060
>gb|AC092557.7| Oryza sativa chromosome 3 BAC OSJNBa0096I06 genomic sequence, complete sequence Length = 164352 Score = 46.1 bits (23), Expect = 0.85 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1148 ttcaagaatttgatgaagggaag 1170 ||||||||||||||||||||||| Sbjct: 153603 ttcaagaatttgatgaagggaag 153625
>emb|AJ567403.1|CRE567403 Citrus reticulata microsatellite DNA, clone Ci02B07 Length = 371 Score = 46.1 bits (23), Expect = 0.85 Identities = 26/27 (96%) Strand = Plus / Minus Query: 1814 acaggatggttgtatgctagggtgcag 1840 ||||||||||| ||||||||||||||| Sbjct: 172 acaggatggttatatgctagggtgcag 146
>gb|AC066593.4| Homo sapiens chromosome 3 clone RP11-344O5 map 3p, complete sequence Length = 165873 Score = 46.1 bits (23), Expect = 0.85 Identities = 23/23 (100%) Strand = Plus / Plus Query: 2233 ggaaaaactgaatatatttgcat 2255 ||||||||||||||||||||||| Sbjct: 53854 ggaaaaactgaatatatttgcat 53876
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 46.1 bits (23), Expect = 0.85 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1042 tgccagcagtgcagcaggtcagt 1064 ||||||||||||||||||||||| Sbjct: 33523473 tgccagcagtgcagcaggtcagt 33523495
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 46.1 bits (23), Expect = 0.85 Identities = 23/23 (100%) Strand = Plus / Minus Query: 1148 ttcaagaatttgatgaagggaag 1170 ||||||||||||||||||||||| Sbjct: 34799119 ttcaagaatttgatgaagggaag 34799097
>gb|AE006470.1| Chlorobium tepidum TLS, complete genome Length = 2154946 Score = 46.1 bits (23), Expect = 0.85 Identities = 23/23 (100%) Strand = Plus / Minus Query: 132 cagccgaagcatcaccggcagcc 154 ||||||||||||||||||||||| Sbjct: 846814 cagccgaagcatcaccggcagcc 846792
>dbj|AK121030.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050G23, full insert sequence Length = 2400 Score = 46.1 bits (23), Expect = 0.85 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1148 ttcaagaatttgatgaagggaag 1170 ||||||||||||||||||||||| Sbjct: 1033 ttcaagaatttgatgaagggaag 1055
>dbj|AK072164.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013130O11, full insert sequence Length = 2938 Score = 46.1 bits (23), Expect = 0.85 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1148 ttcaagaatttgatgaagggaag 1170 ||||||||||||||||||||||| Sbjct: 448 ttcaagaatttgatgaagggaag 470
>dbj|AK069847.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023034C10, full insert sequence Length = 3781 Score = 46.1 bits (23), Expect = 0.85 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1148 ttcaagaatttgatgaagggaag 1170 ||||||||||||||||||||||| Sbjct: 1039 ttcaagaatttgatgaagggaag 1061
>dbj|AK065741.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013040K13, full insert sequence Length = 2740 Score = 46.1 bits (23), Expect = 0.85 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1148 ttcaagaatttgatgaagggaag 1170 ||||||||||||||||||||||| Sbjct: 1127 ttcaagaatttgatgaagggaag 1149
>emb|AL442117.1| Oryza sativa genomic DNA, chromosome X, BAC clone: H0421H08, complete sequence Length = 55574 Score = 46.1 bits (23), Expect = 0.85 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1042 tgccagcagtgcagcaggtcagt 1064 ||||||||||||||||||||||| Sbjct: 37003 tgccagcagtgcagcaggtcagt 37025
>emb|AL606685.3|OSJN00090 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0071I13, complete sequence Length = 152264 Score = 46.1 bits (23), Expect = 0.85 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1042 tgccagcagtgcagcaggtcagt 1064 ||||||||||||||||||||||| Sbjct: 99762 tgccagcagtgcagcaggtcagt 99784
>emb|CR762422.23| Zebrafish DNA sequence from clone CH211-184I23 in linkage group 14, complete sequence Length = 151177 Score = 44.1 bits (22), Expect = 3.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 867 agagagacctgcgaatgcaaca 888 |||||||||||||||||||||| Sbjct: 122683 agagagacctgcgaatgcaaca 122662
>gb|AC166108.4| Mus musculus BAC clone RP23-192E10 from chromosome 1, complete sequence Length = 188836 Score = 44.1 bits (22), Expect = 3.3 Identities = 22/22 (100%) Strand = Plus / Plus Query: 2901 atgtgtctgtttccatgaccac 2922 |||||||||||||||||||||| Sbjct: 166185 atgtgtctgtttccatgaccac 166206
>gb|AC122014.3| Mus musculus chromosome 1 clone RP24-358F15, complete sequence Length = 168526 Score = 44.1 bits (22), Expect = 3.3 Identities = 22/22 (100%) Strand = Plus / Plus Query: 2901 atgtgtctgtttccatgaccac 2922 |||||||||||||||||||||| Sbjct: 10762 atgtgtctgtttccatgaccac 10783
>gb|BC072221.1| Xenopus laevis hypothetical protein MGC81405, mRNA (cDNA clone MGC:81405 IMAGE:6635047), complete cds Length = 3227 Score = 44.1 bits (22), Expect = 3.3 Identities = 22/22 (100%) Strand = Plus / Plus Query: 2246 atatttgcatttgctaatgtct 2267 |||||||||||||||||||||| Sbjct: 2756 atatttgcatttgctaatgtct 2777
>gb|AC124445.4| Mus musculus BAC clone RP24-191B18 from chromosome 10, complete sequence Length = 190295 Score = 44.1 bits (22), Expect = 3.3 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1996 accaaccacaaaattactttgt 2017 |||||||||||||||||||||| Sbjct: 24652 accaaccacaaaattactttgt 24673
>gb|AY883492.1| Zea mays subsp. parviglumis cultivar TAK-Kato Site 4 teosinte glume architecture 1 (tga1) gene, exon 1, intron 1, and partial cds Length = 583 Score = 44.1 bits (22), Expect = 3.3 Identities = 37/42 (88%) Strand = Plus / Plus Query: 961 gactaccataggaggcacaaggtgtgtgaggtgcacaccaag 1002 ||||||||| || ||||||||||||| |||| |||| ||||| Sbjct: 352 gactaccatcggcggcacaaggtgtgcgaggcgcactccaag 393
>gb|AC161766.2| Mus musculus BAC clone RP23-39O12 from chromosome 12, complete sequence Length = 224641 Score = 44.1 bits (22), Expect = 3.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1104 gtttgaagggaaatcatttaac 1125 |||||||||||||||||||||| Sbjct: 201192 gtttgaagggaaatcatttaac 201171
>gb|AC112219.2| Homo sapiens chromosome 3 clone RP11-433A10, complete sequence Length = 155472 Score = 44.1 bits (22), Expect = 3.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 2514 caccagttgagtttgtcctggg 2535 |||||||||||||||||||||| Sbjct: 77531 caccagttgagtttgtcctggg 77510
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 44.1 bits (22), Expect = 3.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1042 tgccagcagtgcagcaggtcag 1063 |||||||||||||||||||||| Sbjct: 27007188 tgccagcagtgcagcaggtcag 27007167
>emb|AL139001.14| Human DNA sequence from clone RP11-1G3 on chromosome 13q21.31-22.2 Contains the 5' end of a novel gene, complete sequence Length = 144569 Score = 44.1 bits (22), Expect = 3.3 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1685 attaggcctggttgtgtaattc 1706 |||||||||||||||||||||| Sbjct: 36825 attaggcctggttgtgtaattc 36846
>gb|AC122360.4| Mus musculus BAC clone RP23-428P21 from chromosome 10, complete sequence Length = 210757 Score = 44.1 bits (22), Expect = 3.3 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1996 accaaccacaaaattactttgt 2017 |||||||||||||||||||||| Sbjct: 193674 accaaccacaaaattactttgt 193695
>emb|BX088603.12| Zebrafish DNA sequence from clone DKEYP-44D3, complete sequence Length = 177056 Score = 44.1 bits (22), Expect = 3.3 Identities = 25/26 (96%) Strand = Plus / Minus Query: 3361 tttcattgttgtactgtgagtcagag 3386 ||||||||||||||||| |||||||| Sbjct: 42113 tttcattgttgtactgtaagtcagag 42088
>dbj|AP004744.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0065C04 Length = 165270 Score = 44.1 bits (22), Expect = 3.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1042 tgccagcagtgcagcaggtcag 1063 |||||||||||||||||||||| Sbjct: 130949 tgccagcagtgcagcaggtcag 130928
>dbj|AP004975.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT21J12, TM0158, complete sequence Length = 83377 Score = 44.1 bits (22), Expect = 3.3 Identities = 34/38 (89%) Strand = Plus / Minus Query: 1134 taggtttcaccttgttcaagaatttgatgaagggaaga 1171 |||||||||| | ||||||||||||||||||| |||| Sbjct: 21981 taggtttcacatgcttcaagaatttgatgaaggaaaga 21944
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 44.1 bits (22), Expect = 3.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 3064 gttcttgtcgaacaggcctgcg 3085 |||||||||||||||||||||| Sbjct: 201666 gttcttgtcgaacaggcctgcg 201645 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 604,065,240 Number of extensions: 32390512 Number of successful extensions: 176398 Number of sequences better than 10.0: 42 Number of HSP's gapped: 176372 Number of HSP's successfully gapped: 93 Length of query: 3448 Length of database: 18,610,659,111 Length adjustment: 24 Effective length of query: 3424 Effective length of database: 18,499,340,271 Effective search space: 63341741087904 Effective search space used: 63341741087904 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 15 (30.2 bits)
