ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf153g17 |
|---|---|
| Clone Library Name | barley_pub |
>Q5VWG9:TAF3_HUMAN Transcription initiation factor TFIID subunit 3 - Homo sapiens| (Human) Length = 929 Score = 36.2 bits (82), Expect = 0.29 Identities = 25/84 (29%), Positives = 39/84 (46%) Frame = +3 Query: 555 QRLSKSMKKLEKDLKHQELYKNEQYRMKLKKSNERLLALIKSSLDIVVAVGLLQLAPKKV 734 ++ K KK +K K +E K E+ R K K+ E+ + + V + LAP V Sbjct: 698 EKEKKKDKKEKKKKKEKEKEKKEKEREKEKREREKREKEKEKHKHEKIKVEPVALAPSPV 757 Query: 735 TPRVTGAFGFASSLIACYQLLPAP 806 PR+T G I +++PAP Sbjct: 758 IPRLTLRVGAGQDKIVISKVVPAP 781
>Q8KA67:RL1_BUCAP 50S ribosomal protein L1 - Buchnera aphidicola subsp. Schizaphis| graminum Length = 231 Score = 34.3 bits (77), Expect = 1.1 Identities = 18/68 (26%), Positives = 38/68 (55%) Frame = +3 Query: 552 LQRLSKSMKKLEKDLKHQELYKNEQYRMKLKKSNERLLALIKSSLDIVVAVGLLQLAPKK 731 +++++K MKK++ D+ ++LY ++ LKKS+ S+D+ + +G + PKK Sbjct: 1 MKKINKRMKKIKNDINFEKLYYIDELIQLLKKSSN---VNFNESIDVAINLG---INPKK 54 Query: 732 VTPRVTGA 755 + G+ Sbjct: 55 SDQNIRGS 62
>Q9Z210:PX11B_MOUSE Peroxisomal membrane protein 11B - Mus musculus (Mouse)| Length = 259 Score = 34.3 bits (77), Expect = 1.1 Identities = 30/127 (23%), Positives = 58/127 (45%), Gaps = 11/127 (8%) Frame = +3 Query: 162 VLYLSKAEARDKICRAIQYGSKFLSNG--QPGPAQNVDKS-------TSLARKVFRLFKF 314 V + ++++AR+++CRA QY L + + G + + K SL RK+ RL Sbjct: 5 VRFSAQSQARERLCRAAQYACSLLGHALQRHGASPELQKQIRQLEGHLSLGRKLLRLGNS 64 Query: 315 VNDLQ-ALISPPAKGTPLPLILLGKSKNAMLSTFLFLDQIVWAGRTGVYKNKERAEFLGR 491 + L+ A + L + N L + D ++WAG++G+ ++ ++ R Sbjct: 65 TDALESAKRAVHLSDVVLRFCITVSHLNRAL--YFACDNVLWAGKSGLAPRVDQEKWAQR 122 Query: 492 -IAFYCF 509 +Y F Sbjct: 123 SFRYYLF 129
>O96011:PX11B_HUMAN Peroxisomal membrane protein 11B - Homo sapiens (Human)| Length = 259 Score = 34.3 bits (77), Expect = 1.1 Identities = 30/127 (23%), Positives = 58/127 (45%), Gaps = 11/127 (8%) Frame = +3 Query: 162 VLYLSKAEARDKICRAIQYGSKFLSNG--QPGPAQNVDKS-------TSLARKVFRLFKF 314 V + ++++AR+++CRA QY L + + G + + K SL RK+ RL Sbjct: 5 VRFSAQSQARERLCRAAQYACSLLGHALQRHGASPELQKQIRQLESHLSLGRKLLRLGNS 64 Query: 315 VNDLQ-ALISPPAKGTPLPLILLGKSKNAMLSTFLFLDQIVWAGRTGVYKNKERAEFLGR 491 + L+ A + L + N L + D ++WAG++G+ ++ ++ R Sbjct: 65 ADALESAKRAVHLSDVVLRFCITVSHLNRAL--YFACDNVLWAGKSGLAPRVDQEKWAQR 122 Query: 492 -IAFYCF 509 +Y F Sbjct: 123 SFRYYLF 129
>Q5RFI0:PX11B_PONPY Peroxisomal membrane protein 11B - Pongo pygmaeus (Orangutan)| Length = 259 Score = 33.5 bits (75), Expect = 1.9 Identities = 30/127 (23%), Positives = 58/127 (45%), Gaps = 11/127 (8%) Frame = +3 Query: 162 VLYLSKAEARDKICRAIQYGSKFLSN--GQPGPAQNVDKS-------TSLARKVFRLFKF 314 V + ++++AR+++CRA QY L + + G + + K SL RK+ RL Sbjct: 5 VRFSAQSQARERLCRAAQYACSLLGHVLQRHGASPELQKQIRQLESHLSLGRKLLRLGNS 64 Query: 315 VNDLQ-ALISPPAKGTPLPLILLGKSKNAMLSTFLFLDQIVWAGRTGVYKNKERAEFLGR 491 + L+ A + L + N L + D ++WAG++G+ ++ ++ R Sbjct: 65 ADALESAKRAVHLSDVVLRFCITVSHLNRAL--YFACDNVLWAGKSGLAPRVDQEKWAQR 122 Query: 492 -IAFYCF 509 +Y F Sbjct: 123 SFRYYLF 129
>Q06696:VPS36_YEAST Vacuolar protein sorting-associated protein 36 - Saccharomyces| cerevisiae (Baker's yeast) Length = 566 Score = 33.1 bits (74), Expect = 2.4 Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 16/161 (9%) Frame = +3 Query: 261 NVDKSTSLARKVFRLFKFVN--------DLQALISPPAKGTPLPLILLGKSKNAMLSTFL 416 +++K SLA + RL+K N +LQ + T PL++L + K L+ L Sbjct: 349 DLNKLMSLATSIERLYKNSNITMKTKTLNLQDESTVNEPKTRRPLLILDREK--FLNKEL 406 Query: 417 FLDQIVWAGRTGVYKNKERAEFLGRIAFYCFLGSNTCTTIIELAELQRL-SKSMK---KL 584 FLD+I +E EF ++ + L S+T II L +L + +KSM+ L Sbjct: 407 FLDEIA----------REIYEFT--LSEFKDLNSDTNYMIITLVDLYAMYNKSMRIGTGL 454 Query: 585 EKDLKHQELYKNEQY----RMKLKKSNERLLALIKSSLDIV 695 ++ +E + ++ +KL K N+R+L + D+V Sbjct: 455 ISPMEMREACERFEHLGLNELKLVKVNKRILCVTSEKFDVV 495
>Q9FK28:MEM12_ARATH Membrin-12 - Arabidopsis thaliana (Mouse-ear cress)| Length = 219 Score = 33.1 bits (74), Expect = 2.4 Identities = 22/97 (22%), Positives = 43/97 (44%) Frame = +3 Query: 420 LDQIVWAGRTGVYKNKERAEFLGRIAFYCFLGSNTCTTIIELAELQRLSKSMKKLEKDLK 599 L++ +W + + + KERA+ LGR GS I+++ + + + K K + Sbjct: 92 LEKYMWRNQRKMLEAKERADLLGR-------GSGEGAHILQIFDEEAQGMNSVKNSKRML 144 Query: 600 HQELYKNEQYRMKLKKSNERLLALIKSSLDIVVAVGL 710 K + +RL + + +LD++ VGL Sbjct: 145 EDSFQSGVAILSKYAEQRDRLKSAQRKALDVLNTVGL 181
>Q00317:PX11B_CANBO Peroxisomal membrane protein PMP30B - Candida boidinii (Yeast)| Length = 256 Score = 31.6 bits (70), Expect = 7.1 Identities = 53/230 (23%), Positives = 94/230 (40%), Gaps = 26/230 (11%) Frame = +3 Query: 168 YLSKAEARDKICRAIQYGSKFLS------NGQPGPAQNVDK---STSLARKVFRLFKFVN 320 +L + +R+K+ R +QY +FL+ N Q + K S ++RK R K + Sbjct: 18 FLDSSASREKLLRLLQYLCRFLTFYTFKRNFNIETIQLIKKIQSSIGISRKPLRFLKNLP 77 Query: 321 DLQALISPPAKGTPLPLILLGK-SKNAMLSTFLFLDQIVWAGRTGVYKNKERAEF---LG 488 L+ L + + +G KN + + D + W G+ +K + Sbjct: 78 HLKNLNKIYSNELLDSTLKIGDLIKNFGYALYFQFDTLQWLKLLGLLTSKNSGSLYFKID 137 Query: 489 RIAFYCFLGSNTCTTIIELAELQRLSKSMKKLEKDLKHQELYKN---------EQYRMKL 641 ++A +L T + I +L L+ S K L ++ Q N EQ + Sbjct: 138 KLAANFWLIGLTGSIITDLRNLKISYDSNKALLNEINSQNNNSNNDTLDEKLIEQNNDLI 197 Query: 642 KKSNERL----LALIKSSLDIVVAVGLLQLAPKKVTPRVTGAFGFASSLI 779 K+NE++ L K+ LD ++A+ QL + V G G +S+I Sbjct: 198 LKNNEKINLNKRDLFKNILDSLIALKGSQLI--DLNDGVLGFAGIITSII 245
>Q5HZG4:TAF3_MOUSE Transcription initiation factor TFIID subunit 3 - Mus musculus| (Mouse) Length = 932 Score = 31.2 bits (69), Expect = 9.2 Identities = 23/86 (26%), Positives = 38/86 (44%) Frame = +3 Query: 549 ELQRLSKSMKKLEKDLKHQELYKNEQYRMKLKKSNERLLALIKSSLDIVVAVGLLQLAPK 728 E +R +K +K K +E K E+ R K ++ E+ + + V + AP Sbjct: 699 EKERKKDKKEKKKKKEKEKEKEKKEREREKERREREKREKEKEKHKHEKIKVEPVIPAPS 758 Query: 729 KVTPRVTGAFGFASSLIACYQLLPAP 806 V PR+T G I +++PAP Sbjct: 759 PVIPRLTLRVGAGQDKIVISKVVPAP 784
>P40358:JEM1_YEAST DnaJ-like chaperone JEM1 precursor - Saccharomyces cerevisiae| (Baker's yeast) Length = 645 Score = 31.2 bits (69), Expect = 9.2 Identities = 22/69 (31%), Positives = 42/69 (60%), Gaps = 2/69 (2%) Frame = +3 Query: 522 TCTTIIELAELQRLSKSMKKLEKDL-KHQELY-KNEQYRMKLKKSNERLLALIKSSLDIV 695 + + + +LAELQRL+K++K + L K+Q + + EQ M ++E + +I+ + I Sbjct: 21 SASKLCDLAELQRLNKNLKVDTESLPKYQWIAGQLEQNCMTADPASENMSDVIQLANQIY 80 Query: 696 VAVGLLQLA 722 +GL+QL+ Sbjct: 81 YKIGLIQLS 89
>O54898:CAC1G_RAT Voltage-dependent T-type calcium channel subunit alpha-1G - Rattus| norvegicus (Rat) Length = 2254 Score = 31.2 bits (69), Expect = 9.3 Identities = 15/36 (41%), Positives = 23/36 (63%) Frame = -1 Query: 823 DHLDLAGAGSNW*QAMSELANPNAPVTRGVTFFGAS 716 D LD+ G GS +SE++ P+ P+TR +F+G S Sbjct: 2017 DSLDVQGLGSRE-DLLSEVSGPSCPLTRSSSFWGGS 2051 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 218,062,102 Number of extensions: 4853930 Number of successful extensions: 12701 Number of sequences better than 10.0: 11 Number of HSP's gapped: 12691 Number of HSP's successfully gapped: 11 Length of query: 412 Length of database: 100,686,439 Length adjustment: 116 Effective length of query: 296 Effective length of database: 68,868,219 Effective search space: 20384992824 Effective search space used: 20384992824 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
