ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf164p18 |
|---|---|
| Clone Library Name | barley_pub |
>P40694:SMBP2_MOUSE DNA-binding protein SMUBP-2 - Mus musculus (Mouse)| Length = 993 Score = 43.5 bits (101), Expect = 0.003 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 10/78 (12%) Frame = +3 Query: 429 DDDEHDRTTTGASHGAAGNTMELQPT-SSYNRLLLHRLADIYGFAHESVGEGEDRHLVLQ 605 D EH R T + + +E + SS++RL +H+LA+ +G H+S GEG+ RH+ + Sbjct: 722 DRTEHFRATIEEFVASKESQLEFPTSLSSHDRLRVHQLAEEFGLRHDSTGEGKARHITVS 781 Query: 606 R---------CPETAIPP 632 R P+ + PP Sbjct: 782 RRSPASSGSVAPQPSSPP 799
>Q60560:SMBP2_MESAU DNA-binding protein SMUBP-2 - Mesocricetus auratus (Golden hamster)| Length = 989 Score = 42.4 bits (98), Expect = 0.006 Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 1/61 (1%) Frame = +3 Query: 429 DDDEHDRTTTGASHGAAGNTMELQPT-SSYNRLLLHRLADIYGFAHESVGEGEDRHLVLQ 605 D EH R + + +E + SS++RLL+H++A+ +G H+S GEG+ RH+ + Sbjct: 722 DRTEHFRAMIEGFVASKESQLEFPASLSSHDRLLVHQIAEEHGLRHDSTGEGKARHITVS 781 Query: 606 R 608 R Sbjct: 782 R 782
>Q15032:R3HD1_HUMAN R3H domain-containing protein 1 - Homo sapiens (Human)| Length = 1099 Score = 37.4 bits (85), Expect = 0.20 Identities = 33/138 (23%), Positives = 61/138 (44%), Gaps = 10/138 (7%) Frame = +3 Query: 246 PARDPSEPG*ASPTLGSEM----------DTTQFAMIEELASLVKDNLYSKHLVLSTEEA 395 P++D +E AS L +M D+T + E L + +K+N + ++L E+ Sbjct: 118 PSKDEAEKEKASDKLPRKMLSRDSSQEYTDSTGIDLHEFLVNTLKNNPRDRMMLLKLEQE 177 Query: 396 LVTLLQHNYLDDDDEHDRTTTGASHGAAGNTMELQPTSSYNRLLLHRLADIYGFAHESVG 575 ++ + +N E R + P +SY+R+LLHR+A +G H Sbjct: 178 ILDFIGNN------ESPRK-------------KFPPMTSYHRMLLHRVAAYFGLDHNVDQ 218 Query: 576 EGEDRHLVLQRCPETAIP 629 G + +++ + T IP Sbjct: 219 SG--KSVIVNKTSNTRIP 234
>P38935:SMBP2_HUMAN DNA-binding protein SMUBP-2 - Homo sapiens (Human)| Length = 993 Score = 34.3 bits (77), Expect = 1.7 Identities = 17/52 (32%), Positives = 33/52 (63%), Gaps = 4/52 (7%) Frame = +3 Query: 489 MELQPT-SSYNRLLLHRLADIYGFAHESVGEGEDRHLVLQR---CPETAIPP 632 +E P+ +S++RL +H++A+ +G H+S GEG+ R + + + P A+ P Sbjct: 744 LEFPPSLNSHDRLRVHQIAEEHGLRHDSSGEGKRRFITVSKRAPRPRAALGP 795
>Q8MSX1:ENC_DROME Protein encore - Drosophila melanogaster (Fruit fly)| Length = 1818 Score = 34.3 bits (77), Expect = 1.7 Identities = 23/94 (24%), Positives = 40/94 (42%) Frame = +3 Query: 354 NLYSKHLVLSTEEALVTLLQHNYLDDDDEHDRTTTGASHGAAGNTMELQPTSSYNRLLLH 533 N ++++L E+ L+ +Q N + G P SSYNR+L+H Sbjct: 440 NPKDRNILLKIEKDLIDFVQEN------------------SRGCEYRFPPASSYNRMLIH 481 Query: 534 RLADIYGFAHESVGEGEDRHLVLQRCPETAIPPV 635 R A +G H +V + +++ T IP + Sbjct: 482 RTAAFFGMEH-NVDTETQQCVIVAVAKNTRIPEI 514
>P30544:ACM4_XENLA Muscarinic acetylcholine receptor M4 - Xenopus laevis (African clawed| frog) Length = 484 Score = 34.3 bits (77), Expect = 1.7 Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 14/70 (20%) Frame = -3 Query: 1505 SSTQLQSREAK-----SYSASLSHTG*VQQPILSSASNI---------PIP*VQAGTAKN 1368 S T LQ+ E K S SASLSH +QP+ ++S + P+P +A TA Sbjct: 280 SMTNLQTAEEKETSNESSSASLSHNPPEKQPLSEASSGVVLAPTQSMPPLP-AKANTASK 338 Query: 1367 WSSIARQTRQ 1338 WS I T+Q Sbjct: 339 WSKIKIVTKQ 348
>P19110:POLG_JAEV5 Genome polyprotein [Contains: Capsid protein C - Japanese| encephalitis virus (strain SA(v)) Length = 3432 Score = 33.9 bits (76), Expect = 2.2 Identities = 34/133 (25%), Positives = 57/133 (42%) Frame = -1 Query: 1558 NRERPLWFQPSRSTASVFLRLNSSQGRQKVTVHHCLTLAEFNSQSFHLLLTSPFHKCRLA 1379 NRE + F+ + +T + L S +G +H L A S + LTS KCRL Sbjct: 529 NRELLMEFEGAHATKQSVVALGSQEGG----LHQALAGAIVVEYSSSVKLTSGHLKCRLK 584 Query: 1378 LQRIGAQSHGRQGSPSSCILGVSFISSSSYLGFRAAPLDISTPGSRNACANILLAAPVCS 1199 + ++ + + C SF + + G +++S GS +C P+ S Sbjct: 585 MDKLALKG----TTYGMCTEKFSFAKNPADTGHGTVVIELSYSGSDGSC-----KIPIVS 635 Query: 1198 FFSVSALTVGVGR 1160 S++ +T VGR Sbjct: 636 VASLNDMT-PVGR 647
>P56699:CAC1E_DISOM Probable voltage-dependent R-type calcium channel subunit alpha-1E -| Discopyge ommata (Electric ray) Length = 2223 Score = 33.5 bits (75), Expect = 2.9 Identities = 25/82 (30%), Positives = 31/82 (37%) Frame = +3 Query: 978 GKRVEDPTERAALVNVKGKELVNGRTSMDNQHAVKPDNKEAAKHNLSSPGGGPYWNLSSQ 1157 G V+ +E LV + GRTS + K KE K L P G Y + +Q Sbjct: 1866 GPDVDSRSEFTPLVPLPPVMFQQGRTSSQGEEIHKQRPKELKKIKLEYPHYGHYLPIENQ 1925 Query: 1158 GRPTPTVSAETLKKEQTGAAKR 1223 GR E E T KR Sbjct: 1926 GRAVSMPRLEIESAEDTSPLKR 1947
>P14403:POLG_JAEVN Genome polyprotein [Contains: Capsid protein C - Japanese| encephalitis virus (strain Nakayama) Length = 1440 Score = 33.5 bits (75), Expect = 2.9 Identities = 34/133 (25%), Positives = 56/133 (42%) Frame = -1 Query: 1558 NRERPLWFQPSRSTASVFLRLNSSQGRQKVTVHHCLTLAEFNSQSFHLLLTSPFHKCRLA 1379 NRE + F+ + +T + L S +G +H L A S + LTS KCRL Sbjct: 457 NRELLMEFEEAHATKQSVVALGSQEGG----LHQALAGAIVVEYSSSVKLTSGHLKCRLK 512 Query: 1378 LQRIGAQSHGRQGSPSSCILGVSFISSSSYLGFRAAPLDISTPGSRNACANILLAAPVCS 1199 + ++ + + C SF + + G +++S GS C P+ S Sbjct: 513 MDKLALKG----TTYGMCTEKFSFAKNPADTGHGTVVIELSYSGSDGPC-----KIPIVS 563 Query: 1198 FFSVSALTVGVGR 1160 S++ +T VGR Sbjct: 564 VASLNDMT-PVGR 575
>P32886:POLG_JAEVJ Genome polyprotein [Contains: Capsid protein C - Japanese| encephalitis virus (strain Jaoars982) Length = 3432 Score = 33.5 bits (75), Expect = 2.9 Identities = 34/133 (25%), Positives = 56/133 (42%) Frame = -1 Query: 1558 NRERPLWFQPSRSTASVFLRLNSSQGRQKVTVHHCLTLAEFNSQSFHLLLTSPFHKCRLA 1379 NRE + F+ + +T + L S +G +H L A S + LTS KCRL Sbjct: 529 NRELLMEFEEAHATKQSVVALGSQEGG----LHQALAGAIVVEYSSSVKLTSGHLKCRLK 584 Query: 1378 LQRIGAQSHGRQGSPSSCILGVSFISSSSYLGFRAAPLDISTPGSRNACANILLAAPVCS 1199 + ++ + + C SF + + G +++S GS C P+ S Sbjct: 585 MDKLALKG----TTYGMCTEKFSFAKNPADTGHGTVVIELSYSGSDGPC-----KIPIVS 635 Query: 1198 FFSVSALTVGVGR 1160 S++ +T VGR Sbjct: 636 VASLNDMT-PVGR 647
>Q5W1J5:FOXP1_XENLA Forkhead box protein P1 - Xenopus laevis (African clawed frog)| Length = 578 Score = 32.0 bits (71), Expect = 8.4 Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 7/99 (7%) Frame = +3 Query: 477 AGNTMELQPTSSYNRLLLHRLA-----DIYGFAHESVGEGEDRHLVLQRCPETAIPPVLV 641 A N++ L T+S L+ LA D+ G + G D R P + V V Sbjct: 479 AENSLPLYTTASMGNPALNSLANAIREDLNGVMEHTSSNGSDSSP--GRSPMQGMHQVHV 536 Query: 642 SDVLWNYDDSDGPSASLMLARNETDL--QKTYEPEDVQD 752 + ++DD+DGP + + A + D + YE + V D Sbjct: 537 KEEPLDHDDNDGPLSLVTTANHSPDFDRDRDYEDDPVND 575
>P27395:POLG_JAEV1 Genome polyprotein [Contains: Capsid protein C - Japanese| encephalitis virus (strain SA-14) Length = 3432 Score = 32.0 bits (71), Expect = 8.4 Identities = 34/133 (25%), Positives = 55/133 (41%) Frame = -1 Query: 1558 NRERPLWFQPSRSTASVFLRLNSSQGRQKVTVHHCLTLAEFNSQSFHLLLTSPFHKCRLA 1379 NRE + F+ + +T + L S +G +H L A S + LTS KCRL Sbjct: 529 NRELLMEFEGAHATKQSVVALGSQEGG----LHQALAGAIVVEYSSSVKLTSGHLKCRLK 584 Query: 1378 LQRIGAQSHGRQGSPSSCILGVSFISSSSYLGFRAAPLDISTPGSRNACANILLAAPVCS 1199 + ++ + + C SF + G +++S GS C P+ S Sbjct: 585 MDKLALKG----TTYGMCTEKFSFAKNPVDTGHGTVVIELSYSGSDGPC-----KIPIVS 635 Query: 1198 FFSVSALTVGVGR 1160 S++ +T VGR Sbjct: 636 VASLNDMT-PVGR 647
>Q5SWP3:NACAD_MOUSE NAC-alpha domain-containing protein 1 - Mus musculus (Mouse)| Length = 1504 Score = 32.0 bits (71), Expect = 8.4 Identities = 25/94 (26%), Positives = 37/94 (39%), Gaps = 2/94 (2%) Frame = +2 Query: 275 SFPNIRERDGHHPIRHD*GAGLARQGQPLQQAPRPVHRG--GPRHSPTAQLSXXXXXXXP 448 ++P +R+R+G HP H L QG P +P P P +PT P Sbjct: 202 AWPVLRDREGGHPALHP-PPELCSQGDPPVPSPPPDLESYFTPPSTPTKSTHALLPDHGP 260 Query: 449 HHNRSKSRGSWEYHGAPAHQLLQPPPFASSRRHI 550 H R +W+ +LL P + S +I Sbjct: 261 H------RDAWDLEAELLDELLDSTPASPSGSYI 288 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 300,418,170 Number of extensions: 6564643 Number of successful extensions: 16613 Number of sequences better than 10.0: 13 Number of HSP's gapped: 16607 Number of HSP's successfully gapped: 13 Length of query: 584 Length of database: 100,686,439 Length adjustment: 119 Effective length of query: 465 Effective length of database: 68,045,334 Effective search space: 31641080310 Effective search space used: 31641080310 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
