ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah59a20 |
|---|---|
| Clone Library Name | barley_pub |
>CESAA_ARATH (Q9SKJ5) Probable cellulose synthase A catalytic subunit 10| [UDP-forming] (EC 2.4.1.12) (AtCesA-10) (AtCesA-13) Length = 1065 Score = 168 bits (425), Expect = 1e-41 Identities = 82/133 (61%), Positives = 99/133 (74%) Frame = -1 Query: 648 SAHLAAVXQGLLKVIAGIEISFTLTSKSGADDENDEFADLYIVKWTSLMIPPIVIMMVNL 469 SAHL AV QGLLKV AGI+ +FT+TSK A DE+ +FA+LY+ KWTSL+IPP I++VNL Sbjct: 920 SAHLFAVFQGLLKVFAGIDTNFTVTSK--ASDEDGDFAELYVFKWTSLLIPPTTILLVNL 977 Query: 468 IAIAVGFSRTIYSEIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLL 289 + I G S I S W L+G + F+FWV+AHLYPF KGL+GR+ RTPTIV VWS LL Sbjct: 978 VGIVAGVSYAINSGYQSWGPLMGKLLFAFWVVAHLYPFLKGLLGRQNRTPTIVIVWSALL 1037 Query: 288 AITISLLWVAINP 250 A SLLWV INP Sbjct: 1038 ASIFSLLWVRINP 1050
>CESA1_ARATH (O48946) Cellulose synthase A catalytic subunit 1 [UDP-forming] (EC| 2.4.1.12) (AtCesA-1) (Radially swollen protein 1) (AtRSW1) Length = 1081 Score = 166 bits (419), Expect = 7e-41 Identities = 81/133 (60%), Positives = 99/133 (74%) Frame = -1 Query: 648 SAHLAAVXQGLLKVIAGIEISFTLTSKSGADDENDEFADLYIVKWTSLMIPPIVIMMVNL 469 SAHL AV QGLLKV+AGI+ +FT+TSK A DE+ +FA+LYI KWT+L+IPP +++VNL Sbjct: 933 SAHLFAVFQGLLKVLAGIDTNFTVTSK--ATDEDGDFAELYIFKWTALLIPPTTVLLVNL 990 Query: 468 IAIAVGFSRTIYSEIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLL 289 I I G S + S W L G +FF+ WV+AHLYPF KGL+GR+ RTPTIV VWS LL Sbjct: 991 IGIVAGVSYAVNSGYQSWGPLFGKLFFALWVIAHLYPFLKGLLGRQNRTPTIVIVWSVLL 1050 Query: 288 AITISLLWVAINP 250 A SLLWV INP Sbjct: 1051 ASIFSLLWVRINP 1063
>CESA3_ARATH (Q941L0) Cellulose synthase A catalytic subunit 3 [UDP-forming] (EC| 2.4.1.12) (AtCesA-3) (Constitutive expression of VSP1 protein 1) (Isoxaben resistant protein 1) (Ath-B) Length = 1065 Score = 163 bits (412), Expect = 5e-40 Identities = 78/133 (58%), Positives = 99/133 (74%) Frame = -1 Query: 648 SAHLAAVXQGLLKVIAGIEISFTLTSKSGADDENDEFADLYIVKWTSLMIPPIVIMMVNL 469 SAHL AV QG+LKV+AGI+ +FT+TSK A DE+ +FA+LY+ KWT+L+IPP +++VNL Sbjct: 918 SAHLFAVFQGILKVLAGIDTNFTVTSK--ASDEDGDFAELYLFKWTTLLIPPTTLLIVNL 975 Query: 468 IAIAVGFSRTIYSEIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLL 289 + + G S I S W L G +FF+FWV+ HLYPF KGLMGR+ RTPTIV VWS LL Sbjct: 976 VGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSVLL 1035 Query: 288 AITISLLWVAINP 250 A SLLWV I+P Sbjct: 1036 ASIFSLLWVRIDP 1048
>CESA4_ARATH (Q84JA6) Cellulose synthase A catalytic subunit 4 [UDP-forming] (EC| 2.4.1.12) (AtCesA-4) (Irregular xylem protein 5) (AtIRX5) Length = 1049 Score = 160 bits (404), Expect = 4e-39 Identities = 75/133 (56%), Positives = 98/133 (73%) Frame = -1 Query: 648 SAHLAAVXQGLLKVIAGIEISFTLTSKSGADDENDEFADLYIVKWTSLMIPPIVIMMVNL 469 SAHL AV QGLLKV+ G++ +FT+TSK GA DE DEF DLY+ KWT+L+IPP ++++N+ Sbjct: 901 SAHLFAVFQGLLKVLFGVDTNFTVTSK-GASDEADEFGDLYLFKWTTLLIPPTTLIILNM 959 Query: 468 IAIAVGFSRTIYSEIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLL 289 + + G S I + W L G +FF+FWV+ HLYPF KGLMGR+ RTPTIV +WS LL Sbjct: 960 VGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSILL 1019 Query: 288 AITISLLWVAINP 250 A SL+WV I+P Sbjct: 1020 ASIFSLVWVRIDP 1032
>CESA8_ARATH (Q8LPK5) Cellulose synthase A catalytic subunit 8 [UDP-forming] (EC| 2.4.1.12) (AtCesA-8) (Irregular xylem protein 1) (AtIRX1) Length = 985 Score = 157 bits (397), Expect = 3e-38 Identities = 76/133 (57%), Positives = 98/133 (73%) Frame = -1 Query: 648 SAHLAAVXQGLLKVIAGIEISFTLTSKSGADDENDEFADLYIVKWTSLMIPPIVIMMVNL 469 SAHL AV QG LK++AG++ +FT+TSK+ ADD EF +LYIVKWT+L+IPP ++++NL Sbjct: 837 SAHLFAVFQGFLKMLAGLDTNFTVTSKT-ADDL--EFGELYIVKWTTLLIPPTSLLIINL 893 Query: 468 IAIAVGFSRTIYSEIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLL 289 + + GFS + W L G VFF+FWV+ HLYPF KGLMGR+ RTPTIV +WS LL Sbjct: 894 VGVVAGFSDALNKGYEAWGPLFGKVFFAFWVILHLYPFLKGLMGRQNRTPTIVILWSILL 953 Query: 288 AITISLLWVAINP 250 A SL+WV INP Sbjct: 954 ASVFSLVWVRINP 966
>CESA7_ARATH (Q9SWW6) Cellulose synthase A catalytic subunit 7 [UDP-forming] (EC| 2.4.1.12) (AtCesA-7) (Irregular xylem protein 3) (AtIRX3) Length = 1026 Score = 157 bits (397), Expect = 3e-38 Identities = 73/133 (54%), Positives = 96/133 (72%) Frame = -1 Query: 648 SAHLAAVXQGLLKVIAGIEISFTLTSKSGADDENDEFADLYIVKWTSLMIPPIVIMMVNL 469 SAHL AV QGLLK++AGI+ +FT+TSK+ DD+ F +LY KWT+L+IPP ++++N+ Sbjct: 880 SAHLFAVVQGLLKILAGIDTNFTVTSKATDDDD---FGELYAFKWTTLLIPPTTVLIINI 936 Query: 468 IAIAVGFSRTIYSEIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLL 289 + + G S I + W L G +FFSFWV+ HLYPF KGLMGR+ RTPTIV +WS LL Sbjct: 937 VGVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLL 996 Query: 288 AITISLLWVAINP 250 A SLLWV I+P Sbjct: 997 ASIFSLLWVRIDP 1009
>CESA5_ARATH (Q8L778) Cellulose synthase A catalytic subunit 5 [UDP-forming] (EC| 2.4.1.12) (AtCesA-5) Length = 1069 Score = 155 bits (393), Expect = 7e-38 Identities = 74/133 (55%), Positives = 100/133 (75%) Frame = -1 Query: 648 SAHLAAVXQGLLKVIAGIEISFTLTSKSGADDENDEFADLYIVKWTSLMIPPIVIMMVNL 469 SAHL A+ QGLLKV+AG+E +FT+TSK+ ADD EF++LYI KWTSL+IPP ++++N+ Sbjct: 923 SAHLFALFQGLLKVLAGVETNFTVTSKA-ADD--GEFSELYIFKWTSLLIPPTTLLIINV 979 Query: 468 IAIAVGFSRTIYSEIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLL 289 I + VG S I + W L G +FF+FWV+ HLYPF KGL+G++ R PTI+ VWS LL Sbjct: 980 IGVIVGISDAISNGYDSWGPLFGRLFFAFWVILHLYPFLKGLLGKQDRMPTIILVWSILL 1039 Query: 288 AITISLLWVAINP 250 A ++LLWV +NP Sbjct: 1040 ASILTLLWVRVNP 1052
>CESA6_ARATH (Q94JQ6) Cellulose synthase A catalytic subunit 6 [UDP-forming] (EC| 2.4.1.12) (AtCesA-6) (Isoxaben resistant protein 2) (Protein PROCUSTE1) (Protein Quill) (AraxCelA) Length = 1084 Score = 153 bits (386), Expect = 5e-37 Identities = 72/133 (54%), Positives = 100/133 (75%) Frame = -1 Query: 648 SAHLAAVXQGLLKVIAGIEISFTLTSKSGADDENDEFADLYIVKWTSLMIPPIVIMMVNL 469 SAHL A+ QGLLKV+AG++ +FT+TSK+ ADD EF+DLY+ KWTSL+IPP+ ++++N+ Sbjct: 938 SAHLFALFQGLLKVLAGVDTNFTVTSKA-ADD--GEFSDLYLFKWTSLLIPPMTLLIINV 994 Query: 468 IAIAVGFSRTIYSEIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLL 289 I + VG S I + W L G +FF+ WV+ HLYPF KGL+G++ R PTI+ VWS LL Sbjct: 995 IGVIVGVSDAISNGYDSWGPLFGRLFFALWVIIHLYPFLKGLLGKQDRMPTIIVVWSILL 1054 Query: 288 AITISLLWVAINP 250 A ++LLWV +NP Sbjct: 1055 ASILTLLWVRVNP 1067
>CESA9_ARATH (Q9SJ22) Probable cellulose synthase A catalytic subunit 9| [UDP-forming] (EC 2.4.1.12) (AtCesA-9) Length = 1088 Score = 150 bits (380), Expect = 2e-36 Identities = 70/133 (52%), Positives = 98/133 (73%) Frame = -1 Query: 648 SAHLAAVXQGLLKVIAGIEISFTLTSKSGADDENDEFADLYIVKWTSLMIPPIVIMMVNL 469 S+HL A+ QGLLKV+AG+ +FT+TSK+ ADD EF++LYI KWTSL+IPP ++++N+ Sbjct: 941 SSHLFALFQGLLKVLAGVSTNFTVTSKA-ADD--GEFSELYIFKWTSLLIPPTTLLIINI 997 Query: 468 IAIAVGFSRTIYSEIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLL 289 + + VG S I + W L G +FF+ WV+ HLYPF KGL+G++ R PTI+ VWS LL Sbjct: 998 VGVIVGVSDAINNGYDSWGPLFGRLFFALWVIVHLYPFLKGLLGKQDRVPTIILVWSILL 1057 Query: 288 AITISLLWVAINP 250 A ++LLWV +NP Sbjct: 1058 ASILTLLWVRVNP 1070
>CESA2_ARATH (O48947) Cellulose synthase A catalytic subunit 2 [UDP-forming] (EC| 2.4.1.12) (AtCesA-2) (Ath-A) Length = 1084 Score = 145 bits (365), Expect = 1e-34 Identities = 67/133 (50%), Positives = 97/133 (72%) Frame = -1 Query: 648 SAHLAAVXQGLLKVIAGIEISFTLTSKSGADDENDEFADLYIVKWTSLMIPPIVIMMVNL 469 S+HL A+ QGLLKV+AG+ +FT+TSK+ ADD F++LYI KWT+L+IPP ++++N+ Sbjct: 937 SSHLFALFQGLLKVLAGVNTNFTVTSKA-ADD--GAFSELYIFKWTTLLIPPTTLLIINI 993 Query: 468 IAIAVGFSRTIYSEIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLL 289 I + VG S I + W L G +FF+ WV+ HLYPF KG++G++ + PTI+ VWS LL Sbjct: 994 IGVIVGVSDAISNGYDSWGPLFGRLFFALWVIVHLYPFLKGMLGKQDKMPTIIVVWSILL 1053 Query: 288 AITISLLWVAINP 250 A ++LLWV +NP Sbjct: 1054 ASILTLLWVRVNP 1066
>FKBP3_YARLI (Q6C4C9) FK506-binding protein 3 (EC 5.2.1.8) (Peptidyl-prolyl| cis-trans isomerase) (PPIase) (Rotamase) Length = 407 Score = 34.7 bits (78), Expect = 0.25 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 3/63 (4%) Frame = +1 Query: 382 EAEEDTAQELAPLRDLAV---DGAAEADSYGDEVDHHDDNGWDHEGRPLDDVEVGELIVF 552 E +E +A+++A ++ L DG E + D+ D +D+ + E DD + GE+ F Sbjct: 82 EDDEVSAEDMAQIKKLIAANEDGLDEVEGGDDDEDDDEDDEMEFEEDDEDDDDEGEIEDF 141 Query: 553 VVC 561 VVC Sbjct: 142 VVC 144
>FOXB2_MOUSE (Q64733) Forkhead box protein B2 (Transcription factor FKH-4)| Length = 428 Score = 32.0 bits (71), Expect = 1.6 Identities = 17/56 (30%), Positives = 19/56 (33%) Frame = -3 Query: 508 PHDPTHCHHDGQPHRHSCRLQPHHLQRDPAVEQAPGRCLLQLLGTGSPVPVRQGPH 341 PH P H HH H H+ HH P P + P P Q PH Sbjct: 138 PHHPHHAHHHHHHHHHAAHHHHHHHPPQPPPPPPPH---MVPYFHQQPAPAPQPPH 190
>VID21_CRYNE (Q5KL22) Chromatin modification-related protein VID21| Length = 985 Score = 31.6 bits (70), Expect = 2.1 Identities = 27/99 (27%), Positives = 45/99 (45%) Frame = +1 Query: 319 RRAPAAPHEALGERVQVSQYPEAEEDTAQELAPLRDLAVDGAAEADSYGDEVDHHDDNGW 498 R P H G+R +V+ EAE++ + L ++ +DG EA+ + +D N Sbjct: 94 RNVPIPGHA--GKRKEVTVEVEAEDEDVEMLVG-QEGELDGEGEANKVLESIDEMRVNEK 150 Query: 499 DHEGRPLDDVEVGELIVFVVCAGLGCEREGDLDASNDLE 615 + E RP D E + + G + EG+ DA + E Sbjct: 151 ERENRPEDPRETVNINQDI---GEEVDAEGEADADGEPE 186
>PO3F2_RAT (P56222) POU domain, class 3, transcription factor 2 (Nervous| system-specific octamer-binding transcription factor N-Oct-3) (Brain-specific homeobox/POU domain protein 2) (Brain-2) (Protein Brn-2) Length = 445 Score = 31.6 bits (70), Expect = 2.1 Identities = 20/61 (32%), Positives = 22/61 (36%) Frame = -3 Query: 499 PTHCHHDGQPHRHSCRLQPHHLQRDPAVEQAPGRCLLQLLGTGSPVPVRQGPHGAPRAHA 320 P HH G H +PHH P P + P P QGP G P AH Sbjct: 209 PAGLHHHGLRDAHD---EPHHADHHPHPHSHPHQ-------QPPPPPPPQGPPGHPGAHH 258 Query: 319 D 317 D Sbjct: 259 D 259
>PO3F2_MOUSE (P31360) POU domain, class 3, transcription factor 2 (Nervous| system-specific octamer-binding transcription factor N-Oct-3) (Brain-specific homeobox/POU domain protein 2) (Brain-2) (Protein Brn-2) Length = 445 Score = 31.6 bits (70), Expect = 2.1 Identities = 20/61 (32%), Positives = 22/61 (36%) Frame = -3 Query: 499 PTHCHHDGQPHRHSCRLQPHHLQRDPAVEQAPGRCLLQLLGTGSPVPVRQGPHGAPRAHA 320 P HH G H +PHH P P + P P QGP G P AH Sbjct: 209 PAGLHHHGLRDAHD---EPHHADHHPHPHSHPHQ-------QPPPPPPPQGPPGHPGAHH 258 Query: 319 D 317 D Sbjct: 259 D 259
>PO3F2_HUMAN (P20265) POU domain, class 3, transcription factor 2 (Nervous| system-specific octamer-binding transcription factor N-Oct-3) (Brain-specific homeobox/POU domain protein 2) (Brain-2) (Protein Brn-2) Length = 443 Score = 31.6 bits (70), Expect = 2.1 Identities = 20/61 (32%), Positives = 22/61 (36%) Frame = -3 Query: 499 PTHCHHDGQPHRHSCRLQPHHLQRDPAVEQAPGRCLLQLLGTGSPVPVRQGPHGAPRAHA 320 P HH G H +PHH P P + P P QGP G P AH Sbjct: 207 PAGLHHHGLRDAHD---EPHHADHHPHPHSHPHQ-------QPPPPPPPQGPPGHPGAHH 256 Query: 319 D 317 D Sbjct: 257 D 257
>1A1D_CRYNE (Q5KMX3) Probable 1-aminocyclopropane-1-carboxylate deaminase (EC| 3.5.99.7) (ACC deaminase) (ACCD) Length = 345 Score = 31.6 bits (70), Expect = 2.1 Identities = 15/34 (44%), Positives = 19/34 (55%) Frame = -1 Query: 348 GLMGRRGRTPTIVFVWSGLLAITISLLWVAINPP 247 G+ R T V V SGL A+T+ WV I+PP Sbjct: 82 GVQSNHTRAVTAVAVASGLKAVTVQEKWVPIDPP 115
>HRPX_PLALO (P04929) Histidine-rich glycoprotein precursor| Length = 351 Score = 30.8 bits (68), Expect = 3.6 Identities = 11/24 (45%), Positives = 11/24 (45%) Frame = -3 Query: 508 PHDPTHCHHDGQPHRHSCRLQPHH 437 PH H HH PH H PHH Sbjct: 88 PHHEEHHHHHPHPHHHHHHHPPHH 111
>SNP29_ARATH (Q9SD96) SNAP25 homologous protein SNAP29 (AtSNAP29)| (Synaptosomal-associated protein SNAP25-like 2) Length = 251 Score = 30.8 bits (68), Expect = 3.6 Identities = 14/46 (30%), Positives = 26/46 (56%) Frame = +1 Query: 355 ERVQVSQYPEAEEDTAQELAPLRDLAVDGAAEADSYGDEVDHHDDN 492 ++ Q+++ EA D + L L+++AVD + +E+DH DN Sbjct: 185 QKTQIAKQDEALTDLSALLGELKNMAVDMGTAIERQTNELDHLQDN 230
>TF2AA_MOUSE (Q99PM3) Transcription initiation factor IIA subunit 1 (General| transcription factor IIA1) [Contains: Transcription initiation factor IIA alpha chain (TFIIA p35 subunit); Transcription initiation factor IIA beta chain (TFIIA p19 subunit)] Length = 378 Score = 30.4 bits (67), Expect = 4.7 Identities = 30/76 (39%), Positives = 38/76 (50%), Gaps = 4/76 (5%) Frame = +1 Query: 325 APA-APHEALGERVQVSQYPEAEEDTAQELAPLRDLAVDGAAEADSYGDE---VDHHDDN 492 APA AP A G+ Q P+A+ AQ+ APL L VDG + S DE D+ DD Sbjct: 246 APAQAPMPAAGQ-----QQPQAQP--AQQQAPLV-LQVDGTGDTSSEEDEDEEEDYDDDE 297 Query: 493 GWDHEGRPLDDVEVGE 540 D E +D +V E Sbjct: 298 EEDKEKDGAEDGQVEE 313
>RCEL_RHOPA (O83005) Reaction center protein L chain (Photosynthetic reaction| center L subunit) Length = 276 Score = 30.4 bits (67), Expect = 4.7 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 8/69 (11%) Frame = -1 Query: 408 LLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFV--------WSGLLAITISLLWVAIN 253 L+GG F FWV PF G+ G T+ F W+ L T +L +++N Sbjct: 16 LIGGDLFDFWV----GPFYVGIFG----VMTVFFALIGIALIAWNTALGPTWNLWQISVN 67 Query: 252 PPSQNSQIG 226 PP +G Sbjct: 68 PPDAKYGLG 76
>NRDC_RAT (P47245) Nardilysin precursor (EC 3.4.24.61) (N-arginine dibasic| convertase) (NRD convertase) (NRD-C) Length = 1161 Score = 30.0 bits (66), Expect = 6.2 Identities = 16/63 (25%), Positives = 32/63 (50%) Frame = +1 Query: 343 EALGERVQVSQYPEAEEDTAQELAPLRDLAVDGAAEADSYGDEVDHHDDNGWDHEGRPLD 522 E GE + + + ++D A ++D +G + + + D D HDD+ D+E L+ Sbjct: 148 EEEGEEEEEEEEDDDDDDDEDSGAEIQDDDEEGFDDEEEFDD--DEHDDDDLDNEENELE 205 Query: 523 DVE 531 ++E Sbjct: 206 ELE 208
>METRN_HUMAN (Q9UJH8) Meteorin precursor| Length = 293 Score = 29.6 bits (65), Expect = 8.0 Identities = 29/88 (32%), Positives = 37/88 (42%), Gaps = 10/88 (11%) Frame = +1 Query: 331 AAPHEALGERVQVSQYPEAEEDTAQELAP-LRDLAVDGAAE---------ADSYGDEVDH 480 A PH+ + RV ++ E ED EL P L VDGA A D V H Sbjct: 133 ATPHQDISRRVAAFRF-ELREDGRPELPPQAHGLGVDGACRPCSDAELLLAACTSDFVIH 191 Query: 481 HDDNGWDHEGRPLDDVEVGELIVFVVCA 564 +G H DVE+ E ++ VV A Sbjct: 192 GIIHGVTH------DVELQESVITVVAA 213
>NORB_PSEST (P98008) Nitric-oxide reductase subunit B (EC 1.7.99.7) (Nitric| oxide reductase cytochrome b subunit) (NOR large subunit) Length = 473 Score = 29.6 bits (65), Expect = 8.0 Identities = 13/36 (36%), Positives = 20/36 (55%) Frame = -1 Query: 417 WSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIV 310 W + + GVFF ++ +LY F +RGR P +V Sbjct: 437 WLRFIAGVFFLIGLVCYLYSFR-----QRGRVPVVV 467
>RCEL_RHOSH (P0C0Y8) Reaction center protein L chain (Photosynthetic reaction| center L subunit) Length = 281 Score = 29.6 bits (65), Expect = 8.0 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 4/67 (5%) Frame = -1 Query: 408 LLGGVFFSFWVLAHLYPFAKGLMGRR----GRTPTIVFVWSGLLAITISLLWVAINPPSQ 241 L+GG F FWV PF G G I+ WS +L T + +++ PP+ Sbjct: 16 LVGGNLFDFWV----GPFYVGFFGVATFFFAALGIILIAWSAVLQGTWNPQLISVYPPAL 71 Query: 240 NSQIGGS 220 +GG+ Sbjct: 72 EYGLGGA 78
>RCEL_RHOS4 (Q3J1A5) Reaction center protein L chain (Photosynthetic reaction| center L subunit) Length = 281 Score = 29.6 bits (65), Expect = 8.0 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 4/67 (5%) Frame = -1 Query: 408 LLGGVFFSFWVLAHLYPFAKGLMGRR----GRTPTIVFVWSGLLAITISLLWVAINPPSQ 241 L+GG F FWV PF G G I+ WS +L T + +++ PP+ Sbjct: 16 LVGGNLFDFWV----GPFYVGFFGVATFFFAALGIILIAWSAVLQGTWNPQLISVYPPAL 71 Query: 240 NSQIGGS 220 +GG+ Sbjct: 72 EYGLGGA 78 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 84,549,400 Number of Sequences: 219361 Number of extensions: 1796071 Number of successful extensions: 5520 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 5156 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5449 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6086476506 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
