ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags14a23 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_183432.2| Oryza sativa (japonica cultivar-group), mRNA Length = 2223 Score = 436 bits (220), Expect = e-119 Identities = 334/372 (89%) Strand = Plus / Minus Query: 338 tcgaggtagctcgtctagtcggttttcttttcttgtggaaggacccatggagagaatcca 397 ||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||| Sbjct: 1678 tcgaggttgctcgtctaatcggttttcttttcttgtggaaggatccatggagagaatcca 1619 Query: 398 tcattgaagcttcaggccacttgccacttctgtcagttggatccaagttgctagggcccc 457 ||| |||| ||||||||| ||||||||||| ||| |||||||||||||||||||||||| Sbjct: 1618 tcactgaactttcaggccatttgccacttctatcacttggatccaagttgctagggcccc 1559 Query: 458 aggtatacatcacaaacttcctcaccttatcccaattctgttgagctcgccttttgctca 517 |||||||||| ||||||||||||||||||||||||||||||||||| || ||||| |||| Sbjct: 1558 aggtatacatgacaaacttcctcaccttatcccaattctgttgagcacgtcttttcctca 1499 Query: 518 gaattttcagcattcttgtatcctcattacggagcttctttatcctagcttcacattgag 577 | ||||| |||||||| | |||||| | || ||||| |||||||||||||||||||||| Sbjct: 1498 gtatttttagcattctggaatcctcgtctcgaagcttttttatcctagcttcacattgag 1439 Query: 578 acatgaggcagagaaatattgctatactgaaggcataaaggccaccaatgctcgcaatta 637 ||| ||||| ||||||||||| | |||||||||||||||||||||||| || |||| || Sbjct: 1438 ccataaggcaaagaaatattgccacactgaaggcataaaggccaccaatacttgcaagta 1379 Query: 638 tactgactgggcctaacacactttcattgctaatctccacgatgtaatctgaaagataac 697 ||||||||||||||| |||| |||| |||||||||||||| ||||| | |||||||| | Sbjct: 1378 tactgactgggcctagcacattttcgttgctaatctccacaatgtagttggaaagatagc 1319 Query: 698 ttatgtagagtg 709 |||||||||||| Sbjct: 1318 ttatgtagagtg 1307
>dbj|AK067316.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013104J17, full insert sequence Length = 2223 Score = 436 bits (220), Expect = e-119 Identities = 334/372 (89%) Strand = Plus / Minus Query: 338 tcgaggtagctcgtctagtcggttttcttttcttgtggaaggacccatggagagaatcca 397 ||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||| Sbjct: 1678 tcgaggttgctcgtctaatcggttttcttttcttgtggaaggatccatggagagaatcca 1619 Query: 398 tcattgaagcttcaggccacttgccacttctgtcagttggatccaagttgctagggcccc 457 ||| |||| ||||||||| ||||||||||| ||| |||||||||||||||||||||||| Sbjct: 1618 tcactgaactttcaggccatttgccacttctatcacttggatccaagttgctagggcccc 1559 Query: 458 aggtatacatcacaaacttcctcaccttatcccaattctgttgagctcgccttttgctca 517 |||||||||| ||||||||||||||||||||||||||||||||||| || ||||| |||| Sbjct: 1558 aggtatacatgacaaacttcctcaccttatcccaattctgttgagcacgtcttttcctca 1499 Query: 518 gaattttcagcattcttgtatcctcattacggagcttctttatcctagcttcacattgag 577 | ||||| |||||||| | |||||| | || ||||| |||||||||||||||||||||| Sbjct: 1498 gtatttttagcattctggaatcctcgtctcgaagcttttttatcctagcttcacattgag 1439 Query: 578 acatgaggcagagaaatattgctatactgaaggcataaaggccaccaatgctcgcaatta 637 ||| ||||| ||||||||||| | |||||||||||||||||||||||| || |||| || Sbjct: 1438 ccataaggcaaagaaatattgccacactgaaggcataaaggccaccaatacttgcaagta 1379 Query: 638 tactgactgggcctaacacactttcattgctaatctccacgatgtaatctgaaagataac 697 ||||||||||||||| |||| |||| |||||||||||||| ||||| | |||||||| | Sbjct: 1378 tactgactgggcctagcacattttcgttgctaatctccacaatgtagttggaaagatagc 1319 Query: 698 ttatgtagagtg 709 |||||||||||| Sbjct: 1318 ttatgtagagtg 1307
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 212 bits (107), Expect = 1e-51 Identities = 137/147 (93%) Strand = Plus / Minus Query: 338 tcgaggtagctcgtctagtcggttttcttttcttgtggaaggacccatggagagaatcca 397 ||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||| Sbjct: 18286 tcgaggttgctcgtctaatcggttttcttttcttgtggaaggatccatggagagaatcca 18227 Query: 398 tcattgaagcttcaggccacttgccacttctgtcagttggatccaagttgctagggcccc 457 ||| |||| ||||||||| ||||||||||| ||| |||||||||||||||||||||||| Sbjct: 18226 tcactgaactttcaggccatttgccacttctatcacttggatccaagttgctagggcccc 18167 Query: 458 aggtatacatcacaaacttcctcacct 484 |||||||||| |||||||||||||||| Sbjct: 18166 aggtatacatgacaaacttcctcacct 18140 Score = 91.7 bits (46), Expect = 3e-15 Identities = 82/94 (87%) Strand = Plus / Minus Query: 479 tcaccttatcccaattctgttgagctcgccttttgctcagaattttcagcattcttgtat 538 ||||||||||||||||||||||||| || ||||| ||||| ||||| |||||||| | || Sbjct: 18061 tcaccttatcccaattctgttgagcacgtcttttcctcagtatttttagcattctggaat 18002 Query: 539 cctcattacggagcttctttatcctagcttcaca 572 |||| | || ||||| ||||||||||||||||| Sbjct: 18001 cctcgtctcgaagcttttttatcctagcttcaca 17968 Score = 83.8 bits (42), Expect = 8e-13 Identities = 66/74 (89%) Strand = Plus / Minus Query: 573 ttgagacatgaggcagagaaatattgctatactgaaggcataaaggccaccaatgctcgc 632 ||||| ||| ||||| ||||||||||| | |||||||||||||||||||||||| || || Sbjct: 17571 ttgagccataaggcaaagaaatattgccacactgaaggcataaaggccaccaatacttgc 17512 Query: 633 aattatactgactg 646 || ||||||||||| Sbjct: 17511 aagtatactgactg 17498 Score = 67.9 bits (34), Expect = 5e-08 Identities = 58/66 (87%) Strand = Plus / Minus Query: 644 ctgggcctaacacactttcattgctaatctccacgatgtaatctgaaagataacttatgt 703 ||||||||| |||| |||| |||||||||||||| ||||| | |||||||| ||||||| Sbjct: 17258 ctgggcctagcacattttcgttgctaatctccacaatgtagttggaaagatagcttatgt 17199 Query: 704 agagtg 709 |||||| Sbjct: 17198 agagtg 17193
>dbj|AP003727.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0672D08 Length = 173729 Score = 212 bits (107), Expect = 1e-51 Identities = 137/147 (93%) Strand = Plus / Minus Query: 338 tcgaggtagctcgtctagtcggttttcttttcttgtggaaggacccatggagagaatcca 397 ||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||| Sbjct: 16088 tcgaggttgctcgtctaatcggttttcttttcttgtggaaggatccatggagagaatcca 16029 Query: 398 tcattgaagcttcaggccacttgccacttctgtcagttggatccaagttgctagggcccc 457 ||| |||| ||||||||| ||||||||||| ||| |||||||||||||||||||||||| Sbjct: 16028 tcactgaactttcaggccatttgccacttctatcacttggatccaagttgctagggcccc 15969 Query: 458 aggtatacatcacaaacttcctcacct 484 |||||||||| |||||||||||||||| Sbjct: 15968 aggtatacatgacaaacttcctcacct 15942 Score = 91.7 bits (46), Expect = 3e-15 Identities = 82/94 (87%) Strand = Plus / Minus Query: 479 tcaccttatcccaattctgttgagctcgccttttgctcagaattttcagcattcttgtat 538 ||||||||||||||||||||||||| || ||||| ||||| ||||| |||||||| | || Sbjct: 15863 tcaccttatcccaattctgttgagcacgtcttttcctcagtatttttagcattctggaat 15804 Query: 539 cctcattacggagcttctttatcctagcttcaca 572 |||| | || ||||| ||||||||||||||||| Sbjct: 15803 cctcgtctcgaagcttttttatcctagcttcaca 15770 Score = 83.8 bits (42), Expect = 8e-13 Identities = 66/74 (89%) Strand = Plus / Minus Query: 573 ttgagacatgaggcagagaaatattgctatactgaaggcataaaggccaccaatgctcgc 632 ||||| ||| ||||| ||||||||||| | |||||||||||||||||||||||| || || Sbjct: 15373 ttgagccataaggcaaagaaatattgccacactgaaggcataaaggccaccaatacttgc 15314 Query: 633 aattatactgactg 646 || ||||||||||| Sbjct: 15313 aagtatactgactg 15300 Score = 67.9 bits (34), Expect = 5e-08 Identities = 58/66 (87%) Strand = Plus / Minus Query: 644 ctgggcctaacacactttcattgctaatctccacgatgtaatctgaaagataacttatgt 703 ||||||||| |||| |||| |||||||||||||| ||||| | |||||||| ||||||| Sbjct: 15060 ctgggcctagcacattttcgttgctaatctccacaatgtagttggaaagatagcttatgt 15001 Query: 704 agagtg 709 |||||| Sbjct: 15000 agagtg 14995
>dbj|AP008219.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, fosmid clone:OSJNOa264G09 Length = 31687 Score = 212 bits (107), Expect = 1e-51 Identities = 137/147 (93%) Strand = Plus / Minus Query: 338 tcgaggtagctcgtctagtcggttttcttttcttgtggaaggacccatggagagaatcca 397 ||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||| Sbjct: 18286 tcgaggttgctcgtctaatcggttttcttttcttgtggaaggatccatggagagaatcca 18227 Query: 398 tcattgaagcttcaggccacttgccacttctgtcagttggatccaagttgctagggcccc 457 ||| |||| ||||||||| ||||||||||| ||| |||||||||||||||||||||||| Sbjct: 18226 tcactgaactttcaggccatttgccacttctatcacttggatccaagttgctagggcccc 18167 Query: 458 aggtatacatcacaaacttcctcacct 484 |||||||||| |||||||||||||||| Sbjct: 18166 aggtatacatgacaaacttcctcacct 18140 Score = 91.7 bits (46), Expect = 3e-15 Identities = 82/94 (87%) Strand = Plus / Minus Query: 479 tcaccttatcccaattctgttgagctcgccttttgctcagaattttcagcattcttgtat 538 ||||||||||||||||||||||||| || ||||| ||||| ||||| |||||||| | || Sbjct: 18061 tcaccttatcccaattctgttgagcacgtcttttcctcagtatttttagcattctggaat 18002 Query: 539 cctcattacggagcttctttatcctagcttcaca 572 |||| | || ||||| ||||||||||||||||| Sbjct: 18001 cctcgtctcgaagcttttttatcctagcttcaca 17968 Score = 83.8 bits (42), Expect = 8e-13 Identities = 66/74 (89%) Strand = Plus / Minus Query: 573 ttgagacatgaggcagagaaatattgctatactgaaggcataaaggccaccaatgctcgc 632 ||||| ||| ||||| ||||||||||| | |||||||||||||||||||||||| || || Sbjct: 17571 ttgagccataaggcaaagaaatattgccacactgaaggcataaaggccaccaatacttgc 17512 Query: 633 aattatactgactg 646 || ||||||||||| Sbjct: 17511 aagtatactgactg 17498 Score = 67.9 bits (34), Expect = 5e-08 Identities = 58/66 (87%) Strand = Plus / Minus Query: 644 ctgggcctaacacactttcattgctaatctccacgatgtaatctgaaagataacttatgt 703 ||||||||| |||| |||| |||||||||||||| ||||| | |||||||| ||||||| Sbjct: 17258 ctgggcctagcacattttcgttgctaatctccacaatgtagttggaaagatagcttatgt 17199 Query: 704 agagtg 709 |||||| Sbjct: 17198 agagtg 17193
>dbj|AP003610.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0402A09 Length = 141966 Score = 212 bits (107), Expect = 1e-51 Identities = 137/147 (93%) Strand = Plus / Minus Query: 338 tcgaggtagctcgtctagtcggttttcttttcttgtggaaggacccatggagagaatcca 397 ||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||| Sbjct: 3216 tcgaggttgctcgtctaatcggttttcttttcttgtggaaggatccatggagagaatcca 3157 Query: 398 tcattgaagcttcaggccacttgccacttctgtcagttggatccaagttgctagggcccc 457 ||| |||| ||||||||| ||||||||||| ||| |||||||||||||||||||||||| Sbjct: 3156 tcactgaactttcaggccatttgccacttctatcacttggatccaagttgctagggcccc 3097 Query: 458 aggtatacatcacaaacttcctcacct 484 |||||||||| |||||||||||||||| Sbjct: 3096 aggtatacatgacaaacttcctcacct 3070 Score = 91.7 bits (46), Expect = 3e-15 Identities = 82/94 (87%) Strand = Plus / Minus Query: 479 tcaccttatcccaattctgttgagctcgccttttgctcagaattttcagcattcttgtat 538 ||||||||||||||||||||||||| || ||||| ||||| ||||| |||||||| | || Sbjct: 2991 tcaccttatcccaattctgttgagcacgtcttttcctcagtatttttagcattctggaat 2932 Query: 539 cctcattacggagcttctttatcctagcttcaca 572 |||| | || ||||| ||||||||||||||||| Sbjct: 2931 cctcgtctcgaagcttttttatcctagcttcaca 2898 Score = 83.8 bits (42), Expect = 8e-13 Identities = 66/74 (89%) Strand = Plus / Minus Query: 573 ttgagacatgaggcagagaaatattgctatactgaaggcataaaggccaccaatgctcgc 632 ||||| ||| ||||| ||||||||||| | |||||||||||||||||||||||| || || Sbjct: 2501 ttgagccataaggcaaagaaatattgccacactgaaggcataaaggccaccaatacttgc 2442 Query: 633 aattatactgactg 646 || ||||||||||| Sbjct: 2441 aagtatactgactg 2428 Score = 67.9 bits (34), Expect = 5e-08 Identities = 58/66 (87%) Strand = Plus / Minus Query: 644 ctgggcctaacacactttcattgctaatctccacgatgtaatctgaaagataacttatgt 703 ||||||||| |||| |||| |||||||||||||| ||||| | |||||||| ||||||| Sbjct: 2188 ctgggcctagcacattttcgttgctaatctccacaatgtagttggaaagatagcttatgt 2129 Query: 704 agagtg 709 |||||| Sbjct: 2128 agagtg 2123
>gb|AF384675.1| Mus musculus FGF15 (Fgf15) gene, complete cds; BC1 scRNA gene, complete sequence; hypothetical protein and cyclin D1 (Ccnd1) genes, complete cds Length = 154480 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 407 cttcaggccacttgccacttc 427 ||||||||||||||||||||| Sbjct: 111966 cttcaggccacttgccacttc 111946
>gb|AC123804.3| Mus musculus BAC clone RP24-140B5 from chromosome 7, complete sequence Length = 145046 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 407 cttcaggccacttgccacttc 427 ||||||||||||||||||||| Sbjct: 113999 cttcaggccacttgccacttc 114019
>gb|AC161763.3| Mus musculus BAC clone RP23-294B14 from chromosome 7, complete sequence Length = 221679 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 407 cttcaggccacttgccacttc 427 ||||||||||||||||||||| Sbjct: 19127 cttcaggccacttgccacttc 19147
>gb|AC091607.11| Homo sapiens 3 BAC RP11-118D22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 175447 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 267 ctgcatttacacagctctttcgatg 291 ||||| ||||||||||||||||||| Sbjct: 19162 ctgcacttacacagctctttcgatg 19138
>gb|AC101940.17| Mus musculus chromosome 3, clone RP24-111E3, complete sequence Length = 157242 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 430 tcagttggatccaagttgctagggc 454 ||||||||||||||||| ||||||| Sbjct: 70540 tcagttggatccaagttcctagggc 70564
>gb|AC158134.8| Mus musculus chromosome 3, clone RP24-384O20, complete sequence Length = 209278 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 430 tcagttggatccaagttgctagggc 454 ||||||||||||||||| ||||||| Sbjct: 207730 tcagttggatccaagttcctagggc 207706 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,179,058 Number of Sequences: 3902068 Number of extensions: 7179058 Number of successful extensions: 124615 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 124543 Number of HSP's gapped (non-prelim): 72 length of query: 746 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 723 effective length of database: 17,143,297,704 effective search space: 12394604239992 effective search space used: 12394604239992 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)
