ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags14a23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ATM_EMENI (Q5BHE2) Serine/threonine-protein kinase tel1 (EC 2.7.... 30 6.1
2NARW_ECOLI (P19317) Respiratory nitrate reductase 2 delta chain ... 30 8.0

>ATM_EMENI (Q5BHE2) Serine/threonine-protein kinase tel1 (EC 2.7.11.1)|
           (DNA-damage checkpoint kinase tel1) (Telomere length
           regulation protein 1) (ATM homolog)
          Length = 2793

 Score = 30.4 bits (67), Expect = 6.1
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = -1

Query: 497 QNWDKVRKFVMYTWGPSNLDPTDRSGKWPEASMMDSLHGSFHKKRKPTRRATSIATRTMR 318
           + W+ V KF +      N   + +S   P +S+MD   G+   +  P+R   S+A R   
Sbjct: 155 EEWESVLKFCLKVVNVRNDHNSQQSTWSPHSSVMDDYIGASGGRSTPSRMTPSLAVREKP 214

Query: 317 EHP 309
           + P
Sbjct: 215 KGP 217



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>NARW_ECOLI (P19317) Respiratory nitrate reductase 2 delta chain (EC 1.7.99.4)|
          Length = 231

 Score = 30.0 bits (66), Expect = 8.0
 Identities = 18/42 (42%), Positives = 25/42 (59%)
 Frame = -1

Query: 743 CRTLPMEY*TLPLYISYLSDYIVEISNESVLGPVSIIASIGG 618
           CR LP +Y  LPLY+ YLS    + + E +L    I+A +GG
Sbjct: 100 CRELP-DY--LPLYLEYLSVLPDDQAKEGLLNVAPILALLGG 138


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,368,028
Number of Sequences: 219361
Number of extensions: 2231173
Number of successful extensions: 5150
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5135
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7876239983
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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