ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags22a13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SUREJ_STRPU (Q26627) Sperm receptor for egg jelly precursor (suREJ) 30 2.9
2HYD_DROME (P51592) Ubiquitin--protein ligase hyd (EC 6.3.2.-) (P... 29 6.4

>SUREJ_STRPU (Q26627) Sperm receptor for egg jelly precursor (suREJ)|
          Length = 1450

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
 Frame = -3

Query: 426 WMHS*-TGVCYLLSDLGVLFA-GYEDLLESFSVDQSVHLIYKNVFLVNLIDGDLLLGVN 256
           W+H+  TG CY   + G +++ G E  L++ +   S+H   +N F+ +++   + LG+N
Sbjct: 205 WVHNPATGYCYFYEERGGMWSKGREFCLDAGADLASIHSAEENAFIFDMLTEFVWLGLN 263



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>HYD_DROME (P51592) Ubiquitin--protein ligase hyd (EC 6.3.2.-) (Protein|
           hyperplastic discs)
          Length = 2885

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +3

Query: 201 WFDLTVLNHLTISSVTFKSLLQGANL 278
           WFDL  +  +T+S+++  ++L G NL
Sbjct: 869 WFDLPPVKSITMSTISLPAMLSGVNL 894


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,500,674
Number of Sequences: 219361
Number of extensions: 1142785
Number of successful extensions: 2250
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2250
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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