Clone Name | rbags22j18 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_549806.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1686 Score = 311 bits (157), Expect = 1e-81 Identities = 343/405 (84%) Strand = Plus / Minus Query: 187 gtccatgaactctacaagtaactccttgaccgtgcctctatccggcatcttcccagccgc 246 |||||||||||| || || | |||| ||||| ||||||| ||||||||||| ||||| || Sbjct: 1674 gtccatgaactccaccagcagctccctgaccatgcctctgtccggcatcttgccagcagc 1615 Query: 247 cccgtagatcggagccatccccccgctgataggccctggattcgctttcacggtgtttac 306 ||||| |||||||| ||||||||| |||||||||||||| ||||| || |||| || Sbjct: 1614 tccgtaaatcggagctcgccccccgctaataggccctggatttgcttttacagtgtccac 1555 Query: 307 agaatcctcgagatccttgaggaattcctcgtaaattgccgtgtgttgaagtgtcacgca 366 ||||| | |||||||| ||||||||||| || || ||||||| || |||||||| || Sbjct: 1554 tgaatctttcagatccttcaggaattcctcatatatgaccgtgtgctgcagtgtcacaca 1495 Query: 367 gatgtgcaaactgttgggtctctgaagagcattgaggtgccatccttttgatgacattat 426 ||||| ||||||||||||||||| |||||||| |||||||| ||||||||||||||||| Sbjct: 1494 aatgtgtaaactgttgggtctctgcagagcattaaggtgccagccttttgatgacattat 1435 Query: 427 gtcattcacctcaaatatgtcgaccgcgtccgacccaaaggccacgacagtcatgtctgg 486 ||| |||||||||||||| || |||| || || ||||| |||||||||||||||||||| Sbjct: 1434 gtcgttcacctcaaatatatcaaccgaatctgagccaaatgccacgacagtcatgtctgg 1375 Query: 487 tttcccaatcacaaataaacctgagatatcatcaattcctttttgtatcttctttgagac 546 || ||||||||||| || |||| |||||| ||||| ||| ||||||| ||||| || || Sbjct: 1374 ctttccaatcacaaacaaccctgggatatcttcaatccctctttgtattttcttcgacac 1315 Query: 547 ttccatgatttgacccgtactttccaaataaccattcaatccaag 591 ||||||||| ||||| ||| |||||| |||||| |||| |||||| Sbjct: 1314 ttccatgatatgacctgtattttccatataaccgttcagtccaag 1270
>gb|AY972084.1| Oryza sativa (japonica cultivar-group) sphingosine-1-phosphate lyase (SPL) mRNA, complete cds Length = 1620 Score = 311 bits (157), Expect = 1e-81 Identities = 343/405 (84%) Strand = Plus / Minus Query: 187 gtccatgaactctacaagtaactccttgaccgtgcctctatccggcatcttcccagccgc 246 |||||||||||| || || | |||| ||||| ||||||| ||||||||||| ||||| || Sbjct: 1608 gtccatgaactccaccagcagctccctgaccatgcctctgtccggcatcttgccagcagc 1549 Query: 247 cccgtagatcggagccatccccccgctgataggccctggattcgctttcacggtgtttac 306 ||||| |||||||| ||||||||| |||||||||||||| ||||| || |||| || Sbjct: 1548 tccgtaaatcggagctcgccccccgctaataggccctggatttgcttttacagtgtccac 1489 Query: 307 agaatcctcgagatccttgaggaattcctcgtaaattgccgtgtgttgaagtgtcacgca 366 ||||| | |||||||| ||||||||||| || || ||||||| || |||||||| || Sbjct: 1488 tgaatctttcagatccttcaggaattcctcatatatgaccgtgtgctgcagtgtcacaca 1429 Query: 367 gatgtgcaaactgttgggtctctgaagagcattgaggtgccatccttttgatgacattat 426 ||||| ||||||||||||||||| |||||||| |||||||| ||||||||||||||||| Sbjct: 1428 aatgtgtaaactgttgggtctctgcagagcattaaggtgccagccttttgatgacattat 1369 Query: 427 gtcattcacctcaaatatgtcgaccgcgtccgacccaaaggccacgacagtcatgtctgg 486 ||| |||||||||||||| || |||| || || ||||| |||||||||||||||||||| Sbjct: 1368 gtcgttcacctcaaatatatcaaccgaatctgagccaaatgccacgacagtcatgtctgg 1309 Query: 487 tttcccaatcacaaataaacctgagatatcatcaattcctttttgtatcttctttgagac 546 || ||||||||||| || |||| |||||| ||||| ||| ||||||| ||||| || || Sbjct: 1308 ctttccaatcacaaacaaccctgggatatcttcaatccctctttgtattttcttcgacac 1249 Query: 547 ttccatgatttgacccgtactttccaaataaccattcaatccaag 591 ||||||||| ||||| ||| |||||| |||||| |||| |||||| Sbjct: 1248 ttccatgatatgacctgtattttccatataaccgttcagtccaag 1204
>gb|AY106741.1| Zea mays PCO149699 mRNA sequence Length = 329 Score = 190 bits (96), Expect = 4e-45 Identities = 252/304 (82%) Strand = Plus / Minus Query: 252 agatcggagccatccccccgctgataggccctggattcgctttcacggtgtttacagaat 311 |||| |||||| | || ||||| || || ||||| || |||||||| ||||| ||||| | Sbjct: 329 agataggagcctttccgccgctaatcgggcctgggtttgctttcacagtgttgacagagt 270 Query: 312 cctcgagatccttgaggaattcctcgtaaattgccgtgtgttgaagtgtcacgcagatgt 371 | | |||||||| ||||||| ||||||| | |||||||||||| ||||| ||||| | Sbjct: 269 cttgcagatccttcaggaattggtcgtaaacagtcgtgtgttgaagggtcacacagatat 210 Query: 372 gcaaactgttgggtctctgaagagcattgaggtgccatccttttgatgacattatgtcat 431 |||| ||||| |||||||| ||||||||||| ||||| |||||||||||||||||||| | Sbjct: 209 gcaagctgttaggtctctgcagagcattgagatgccaaccttttgatgacattatgtcgt 150 Query: 432 tcacctcaaatatgtcgaccgcgtccgacccaaaggccacgacagtcatgtctggtttcc 491 ||||||||||||||||||| |||| || || || ||||| || ||||| || ||||||| Sbjct: 149 tcacctcaaatatgtcgacaacgtctgagccgaacgccacaacggtcatatccggtttcc 90 Query: 492 caatcacaaataaacctgagatatcatcaattcctttttgtatcttctttgagacttcca 551 | |||||||| || |||| ||| || |||| ||| ||||||| |||||||| || |||| Sbjct: 89 ctatcacaaacaaccctgggatctctccaatccctctttgtattttctttgaaacatcca 30 Query: 552 tgat 555 |||| Sbjct: 29 tgat 26
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 155 bits (78), Expect = 2e-34 Identities = 129/146 (88%) Strand = Plus / Minus Query: 377 ctgttgggtctctgaagagcattgaggtgccatccttttgatgacattatgtcattcacc 436 |||||||||||||| |||||||| |||||||| |||||||||||||||||||| |||||| Sbjct: 39602 ctgttgggtctctgcagagcattaaggtgccagccttttgatgacattatgtcgttcacc 39543 Query: 437 tcaaatatgtcgaccgcgtccgacccaaaggccacgacagtcatgtctggtttcccaatc 496 |||||||| || |||| || || ||||| |||||||||||||||||||| || |||||| Sbjct: 39542 tcaaatatatcaaccgaatctgagccaaatgccacgacagtcatgtctggctttccaatc 39483 Query: 497 acaaataaacctgagatatcatcaat 522 ||||| || |||| |||||| ||||| Sbjct: 39482 acaaacaaccctgggatatcttcaat 39457 Score = 87.7 bits (44), Expect = 4e-14 Identities = 92/108 (85%) Strand = Plus / Minus Query: 187 gtccatgaactctacaagtaactccttgaccgtgcctctatccggcatcttcccagccgc 246 |||||||||||| || || | |||| ||||| ||||||| ||||||||||| ||||| || Sbjct: 39995 gtccatgaactccaccagcagctccctgaccatgcctctgtccggcatcttgccagcagc 39936 Query: 247 cccgtagatcggagccatccccccgctgataggccctggattcgcttt 294 ||||| |||||||| ||||||||| |||||||||||||| ||||| Sbjct: 39935 tccgtaaatcggagctcgccccccgctaataggccctggatttgcttt 39888 Score = 48.1 bits (24), Expect = 0.033 Identities = 45/52 (86%) Strand = Plus / Minus Query: 528 tttgtatcttctttgagacttccatgatttgacccgtactttccaaataacc 579 ||||||| ||||| || ||||||||||| ||||| ||| |||||| |||||| Sbjct: 39185 tttgtattttcttcgacacttccatgatatgacctgtattttccatataacc 39134 Score = 46.1 bits (23), Expect = 0.13 Identities = 53/63 (84%) Strand = Plus / Minus Query: 317 agatccttgaggaattcctcgtaaattgccgtgtgttgaagtgtcacgcagatgtgcaaa 376 |||||||| ||||||||||| || || ||||||| || |||||||| || ||||| ||| Sbjct: 39762 agatccttcaggaattcctcatatatgaccgtgtgctgcagtgtcacacaaatgtgtaaa 39703 Query: 377 ctg 379 ||| Sbjct: 39702 ctg 39700
>dbj|AP003727.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0672D08 Length = 173729 Score = 155 bits (78), Expect = 2e-34 Identities = 129/146 (88%) Strand = Plus / Minus Query: 377 ctgttgggtctctgaagagcattgaggtgccatccttttgatgacattatgtcattcacc 436 |||||||||||||| |||||||| |||||||| |||||||||||||||||||| |||||| Sbjct: 37404 ctgttgggtctctgcagagcattaaggtgccagccttttgatgacattatgtcgttcacc 37345 Query: 437 tcaaatatgtcgaccgcgtccgacccaaaggccacgacagtcatgtctggtttcccaatc 496 |||||||| || |||| || || ||||| |||||||||||||||||||| || |||||| Sbjct: 37344 tcaaatatatcaaccgaatctgagccaaatgccacgacagtcatgtctggctttccaatc 37285 Query: 497 acaaataaacctgagatatcatcaat 522 ||||| || |||| |||||| ||||| Sbjct: 37284 acaaacaaccctgggatatcttcaat 37259 Score = 87.7 bits (44), Expect = 4e-14 Identities = 92/108 (85%) Strand = Plus / Minus Query: 187 gtccatgaactctacaagtaactccttgaccgtgcctctatccggcatcttcccagccgc 246 |||||||||||| || || | |||| ||||| ||||||| ||||||||||| ||||| || Sbjct: 37797 gtccatgaactccaccagcagctccctgaccatgcctctgtccggcatcttgccagcagc 37738 Query: 247 cccgtagatcggagccatccccccgctgataggccctggattcgcttt 294 ||||| |||||||| ||||||||| |||||||||||||| ||||| Sbjct: 37737 tccgtaaatcggagctcgccccccgctaataggccctggatttgcttt 37690 Score = 48.1 bits (24), Expect = 0.033 Identities = 45/52 (86%) Strand = Plus / Minus Query: 528 tttgtatcttctttgagacttccatgatttgacccgtactttccaaataacc 579 ||||||| ||||| || ||||||||||| ||||| ||| |||||| |||||| Sbjct: 36987 tttgtattttcttcgacacttccatgatatgacctgtattttccatataacc 36936 Score = 46.1 bits (23), Expect = 0.13 Identities = 53/63 (84%) Strand = Plus / Minus Query: 317 agatccttgaggaattcctcgtaaattgccgtgtgttgaagtgtcacgcagatgtgcaaa 376 |||||||| ||||||||||| || || ||||||| || |||||||| || ||||| ||| Sbjct: 37564 agatccttcaggaattcctcatatatgaccgtgtgctgcagtgtcacacaaatgtgtaaa 37505 Query: 377 ctg 379 ||| Sbjct: 37504 ctg 37502
>dbj|AP003610.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0402A09 Length = 141966 Score = 155 bits (78), Expect = 2e-34 Identities = 129/146 (88%) Strand = Plus / Minus Query: 377 ctgttgggtctctgaagagcattgaggtgccatccttttgatgacattatgtcattcacc 436 |||||||||||||| |||||||| |||||||| |||||||||||||||||||| |||||| Sbjct: 24532 ctgttgggtctctgcagagcattaaggtgccagccttttgatgacattatgtcgttcacc 24473 Query: 437 tcaaatatgtcgaccgcgtccgacccaaaggccacgacagtcatgtctggtttcccaatc 496 |||||||| || |||| || || ||||| |||||||||||||||||||| || |||||| Sbjct: 24472 tcaaatatatcaaccgaatctgagccaaatgccacgacagtcatgtctggctttccaatc 24413 Query: 497 acaaataaacctgagatatcatcaat 522 ||||| || |||| |||||| ||||| Sbjct: 24412 acaaacaaccctgggatatcttcaat 24387 Score = 87.7 bits (44), Expect = 4e-14 Identities = 92/108 (85%) Strand = Plus / Minus Query: 187 gtccatgaactctacaagtaactccttgaccgtgcctctatccggcatcttcccagccgc 246 |||||||||||| || || | |||| ||||| ||||||| ||||||||||| ||||| || Sbjct: 24925 gtccatgaactccaccagcagctccctgaccatgcctctgtccggcatcttgccagcagc 24866 Query: 247 cccgtagatcggagccatccccccgctgataggccctggattcgcttt 294 ||||| |||||||| ||||||||| |||||||||||||| ||||| Sbjct: 24865 tccgtaaatcggagctcgccccccgctaataggccctggatttgcttt 24818 Score = 48.1 bits (24), Expect = 0.033 Identities = 45/52 (86%) Strand = Plus / Minus Query: 528 tttgtatcttctttgagacttccatgatttgacccgtactttccaaataacc 579 ||||||| ||||| || ||||||||||| ||||| ||| |||||| |||||| Sbjct: 24115 tttgtattttcttcgacacttccatgatatgacctgtattttccatataacc 24064 Score = 46.1 bits (23), Expect = 0.13 Identities = 53/63 (84%) Strand = Plus / Minus Query: 317 agatccttgaggaattcctcgtaaattgccgtgtgttgaagtgtcacgcagatgtgcaaa 376 |||||||| ||||||||||| || || ||||||| || |||||||| || ||||| ||| Sbjct: 24692 agatccttcaggaattcctcatatatgaccgtgtgctgcagtgtcacacaaatgtgtaaa 24633 Query: 377 ctg 379 ||| Sbjct: 24632 ctg 24630
>ref|NM_102563.2| Arabidopsis thaliana carboxy-lyase AT1G27980 mRNA, complete cds Length = 2082 Score = 48.1 bits (24), Expect = 0.033 Identities = 57/68 (83%) Strand = Plus / Minus Query: 377 ctgttgggtctctgaagagcattgaggtgccatccttttgatgacattatgtcattcacc 436 |||||||||||||| || ||||| | ||||| ||||| || ||||| |||||||| || Sbjct: 1490 ctgttgggtctctgtagtgcattcaaatgccaacctttagaagacatgatgtcattaact 1431 Query: 437 tcaaatat 444 |||||||| Sbjct: 1430 tcaaatat 1423
>gb|AY113914.1| Arabidopsis thaliana putative sphingosine-1-phosphate lyase (At1g27980) mRNA, complete cds Length = 1666 Score = 48.1 bits (24), Expect = 0.033 Identities = 57/68 (83%) Strand = Plus / Minus Query: 377 ctgttgggtctctgaagagcattgaggtgccatccttttgatgacattatgtcattcacc 436 |||||||||||||| || ||||| | ||||| ||||| || ||||| |||||||| || Sbjct: 1433 ctgttgggtctctgtagtgcattcaaatgccaacctttagaagacatgatgtcattaact 1374 Query: 437 tcaaatat 444 |||||||| Sbjct: 1373 tcaaatat 1366
>gb|AF360166.1| Arabidopsis thaliana putative sphingosine-1-phosphate lyase (At1g27980) mRNA, complete cds Length = 1836 Score = 48.1 bits (24), Expect = 0.033 Identities = 57/68 (83%) Strand = Plus / Minus Query: 377 ctgttgggtctctgaagagcattgaggtgccatccttttgatgacattatgtcattcacc 436 |||||||||||||| || ||||| | ||||| ||||| || ||||| |||||||| || Sbjct: 1492 ctgttgggtctctgtagtgcattcaaatgccaacctttagaagacatgatgtcattaact 1433 Query: 437 tcaaatat 444 |||||||| Sbjct: 1432 tcaaatat 1425
>emb|BX814065.1|CNS0AEBE Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB55ZB02 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1748 Score = 48.1 bits (24), Expect = 0.033 Identities = 57/68 (83%) Strand = Plus / Minus Query: 377 ctgttgggtctctgaagagcattgaggtgccatccttttgatgacattatgtcattcacc 436 |||||||||||||| || ||||| | ||||| ||||| || ||||| |||||||| || Sbjct: 1459 ctgttgggtctctgtagtgcattcaaatgccaacctttagaagacatgatgtcattaact 1400 Query: 437 tcaaatat 444 |||||||| Sbjct: 1399 tcaaatat 1392
>gb|AC069471.4|AC069471 Arabidopsis thaliana chromosome 1 BAC F13K9 genomic sequence, complete sequence Length = 126991 Score = 48.1 bits (24), Expect = 0.033 Identities = 57/68 (83%) Strand = Plus / Minus Query: 377 ctgttgggtctctgaagagcattgaggtgccatccttttgatgacattatgtcattcacc 436 |||||||||||||| || ||||| | ||||| ||||| || ||||| |||||||| || Sbjct: 38535 ctgttgggtctctgtagtgcattcaaatgccaacctttagaagacatgatgtcattaact 38476 Query: 437 tcaaatat 444 |||||||| Sbjct: 38475 tcaaatat 38468
>gb|AY085442.1| Arabidopsis thaliana clone 1518 mRNA, complete sequence Length = 531 Score = 48.1 bits (24), Expect = 0.033 Identities = 57/68 (83%) Strand = Plus / Minus Query: 377 ctgttgggtctctgaagagcattgaggtgccatccttttgatgacattatgtcattcacc 436 |||||||||||||| || ||||| | ||||| ||||| || ||||| |||||||| || Sbjct: 202 ctgttgggtctctgtagtgcattcaaatgccaacctttagaagacatgatgtcattaact 143 Query: 437 tcaaatat 444 |||||||| Sbjct: 142 tcaaatat 135
>dbj|AB175035.1| Arabidopsis thaliana AtSPL1 mRNA for sphingosine-1-phosphate lyase, complete cds Length = 1635 Score = 48.1 bits (24), Expect = 0.033 Identities = 57/68 (83%) Strand = Plus / Minus Query: 377 ctgttgggtctctgaagagcattgaggtgccatccttttgatgacattatgtcattcacc 436 |||||||||||||| || ||||| | ||||| ||||| || ||||| |||||||| || Sbjct: 1433 ctgttgggtctctgtagtgcattcaaatgccaacctttagaagacatgatgtcattaact 1374 Query: 437 tcaaatat 444 |||||||| Sbjct: 1373 tcaaatat 1366
>ref|XM_384589.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG04413.1) partial mRNA Length = 1719 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Minus Query: 386 ctctgaagagcattgaggtgccatcc 411 ||||||||||| |||||||||||||| Sbjct: 1469 ctctgaagagcgttgaggtgccatcc 1444
>emb|BX005167.12| Mouse DNA sequence from clone RP23-247K19 on chromosome X, complete sequence Length = 212046 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 417 atgacattatgtcattcacctc 438 |||||||||||||||||||||| Sbjct: 166299 atgacattatgtcattcacctc 166320
>emb|CR931763.8| Zebrafish DNA sequence from clone DKEY-65B12 in linkage group 5, complete sequence Length = 186739 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 412 ttttgatgacattatgtcatt 432 ||||||||||||||||||||| Sbjct: 6274 ttttgatgacattatgtcatt 6294
>gb|AC108442.6| Mus musculus chromosome 8, clone RP23-242M14, complete sequence Length = 209618 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 acagagagataaccaatggg 161 |||||||||||||||||||| Sbjct: 51873 acagagagataaccaatggg 51854
>gb|AC138334.11| Mus musculus chromosome 7, clone RP23-306H5, complete sequence Length = 177803 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 305 acagaatcctcgagatccttgagg 328 ||||||||||| |||||||||||| Sbjct: 176197 acagaatcctcaagatccttgagg 176220
>gb|AC160140.2| Mus musculus BAC clone RP23-40C13 from chromosome 13, complete sequence Length = 118653 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 481 gtctggtttcccaatcacaaataaacct 508 ||||||||||||| ||||||| |||||| Sbjct: 47753 gtctggtttcccactcacaaacaaacct 47780
>gb|AC139347.4| Mus musculus BAC clone RP24-334F11 from chromosome 16, complete sequence Length = 193398 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 527 ttttgtatcttctttgagac 546 |||||||||||||||||||| Sbjct: 4717 ttttgtatcttctttgagac 4736
>gb|AC146143.2| Pan troglodytes BAC clone RP43-37I19 from 7, complete sequence Length = 188333 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 ctcgagatccttgaggaatt 332 |||||||||||||||||||| Sbjct: 48216 ctcgagatccttgaggaatt 48197
>gb|AC124541.4| Mus musculus BAC clone RP23-257F7 from 7, complete sequence Length = 145556 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 ggttgtacatacatggtaca 144 |||||||||||||||||||| Sbjct: 79662 ggttgtacatacatggtaca 79681
>gb|AC129021.4| Mus musculus BAC clone RP23-312H15 from 16, complete sequence Length = 184961 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 527 ttttgtatcttctttgagac 546 |||||||||||||||||||| Sbjct: 163643 ttttgtatcttctttgagac 163662
>emb|Z78421.1|HSN121E8 Human DNA sequence from clone LL22NC03-121E8 on chromosome 22, complete sequence Length = 39372 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 222 ctctatccggcatcttccca 241 |||||||||||||||||||| Sbjct: 21617 ctctatccggcatcttccca 21598
>emb|AL606500.8| Human DNA sequence from clone RP11-274N19 on chromosome 1 Contains the 3' end of the KCNN3 gene for potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3, a novel gene and the 5' end of the ADAR gene for adenosine deaminase, RNA-specific, complete sequence Length = 173014 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 420 acattatgtcattcacctcaaatatgtc 447 |||| ||||||||||||||||| ||||| Sbjct: 83430 acatcatgtcattcacctcaaagatgtc 83403
>gb|AC090578.6| Homo sapiens chromosome 8, clone RP11-642C5, complete sequence Length = 187209 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 411 cttttgatgacattatgtca 430 |||||||||||||||||||| Sbjct: 178352 cttttgatgacattatgtca 178333
>dbj|AK156094.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830007M13 product:unclassifiable, full insert sequence Length = 3597 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 527 ttttgtatcttctttgagac 546 |||||||||||||||||||| Sbjct: 1689 ttttgtatcttctttgagac 1670
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 512 atatcatcaattcctttttg 531 |||||||||||||||||||| Sbjct: 25505487 atatcatcaattcctttttg 25505506
>gb|AC011901.4| Homo sapiens BAC clone RP11-547P13 from 2, complete sequence Length = 201567 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 ctgaaatgtaactttattga 20 |||||||||||||||||||| Sbjct: 138142 ctgaaatgtaactttattga 138123
>gb|AC017053.8| Homo sapiens BAC clone RP11-339D8 from 2, complete sequence Length = 181952 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 499 aaataaacctgagatatcat 518 |||||||||||||||||||| Sbjct: 54021 aaataaacctgagatatcat 54040
>gb|AC009107.11| Homo sapiens chromosome 16 clone RP11-459F6, complete sequence Length = 208220 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 274 gataggccctggattcgctt 293 |||||||||||||||||||| Sbjct: 125875 gataggccctggattcgctt 125856
>dbj|AP003573.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0523F01 Length = 146419 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 512 atatcatcaattcctttttg 531 |||||||||||||||||||| Sbjct: 23804 atatcatcaattcctttttg 23823
>emb|BX000696.19| Zebrafish DNA sequence from clone CH211-107E16 in linkage group 11, complete sequence Length = 154744 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 tttgcagccaaactaaatat 97 |||||||||||||||||||| Sbjct: 62335 tttgcagccaaactaaatat 62354
>gb|AC147652.4| Pan troglodytes BAC clone RP43-136A3 from chromosome 7, complete sequence Length = 196621 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 ctcgagatccttgaggaatt 332 |||||||||||||||||||| Sbjct: 73352 ctcgagatccttgaggaatt 73333
>emb|CT010575.15| Mouse DNA sequence from clone RP23-217J21 on chromosome 13, complete sequence Length = 201791 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 481 gtctggtttcccaatcacaaataaacct 508 ||||||||||||| ||||||| |||||| Sbjct: 189120 gtctggtttcccactcacaaacaaacct 189147
>gb|AC149605.7| Mus musculus BAC clone RP23-473E20 from 7, complete sequence Length = 195585 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 ggttgtacatacatggtaca 144 |||||||||||||||||||| Sbjct: 132640 ggttgtacatacatggtaca 132621
>gb|AC167659.7| Mus musculus chromosome 7, clone RP23-165I8, complete sequence Length = 248723 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 305 acagaatcctcgagatccttgagg 328 ||||||||||| |||||||||||| Sbjct: 34255 acagaatcctcaagatccttgagg 34278 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,051,732 Number of Sequences: 3902068 Number of extensions: 5051732 Number of successful extensions: 108077 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 107961 Number of HSP's gapped (non-prelim): 116 length of query: 591 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 568 effective length of database: 17,143,297,704 effective search space: 9737393095872 effective search space used: 9737393095872 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)