Clone Information

BLAST Search Result

Clone Name	rbags28o23
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	PHYC_SORBI (P93528) Phytochrome C	267	2e-71
2	PHYC_ORYSA (Q9ZWI9) Phytochrome C	261	1e-69
3	PHY_PICAB (Q40762) Phytochrome	158	2e-38
4	PHY1_SELMA (Q01549) Phytochrome 1	149	8e-36
5	PHYC_ARATH (P14714) Phytochrome C	149	1e-35
6	PHY1_PHYPA (P36505) Phytochrome 1	148	1e-35
7	PHY2_CERPU (Q39557) Phytochrome 2	145	1e-34
8	PHY_PINSY (Q41046) Phytochrome	137	3e-32
9	PHYB_SOYBN (P42499) Phytochrome B	126	5e-29
10	PHY_MOUSC (P33529) Phytochrome	122	8e-28
11	PHYB_TOBAC (P29130) Phytochrome B	120	3e-27
12	PHYB_SOLTU (P34094) Phytochrome B	119	9e-27
13	PHYB1_LYCES (Q9ZS62) Phytochrome B1	118	2e-26
14	PHYD_ARATH (P42497) Phytochrome D	117	2e-26
15	PHYA_CUCPE (P06592) Phytochrome A	115	2e-25
16	PHYA_ARATH (P14712) Phytochrome A	114	2e-25
17	PHYA_PEA (P15001) Phytochrome A	112	8e-25
18	PHYA_LATSA (P93673) Phytochrome type A	112	1e-24
19	PHYA_PETCR (P55141) Phytochrome A	110	4e-24
20	PHYA_SOLTU (P30733) Phytochrome A	108	1e-23
21	PHYB_ARATH (P14713) Phytochrome B	107	3e-23
22	PHYB_SORBI (P93527) Phytochrome B	107	4e-23
23	PHYE_IPONI (P55004) Phytochrome E	105	2e-22
24	PHYB_ORYSA (P25764) Phytochrome B	105	2e-22
25	PHYA1_TOBAC (P33530) Phytochrome A1	104	2e-22
26	PHYA_SOYBN (P42500) Phytochrome A	103	4e-22
27	PHY_ADICA (P42496) Phytochrome 1	100	4e-21
28	PHYA_POPTM (O49934) Phytochrome A	89	1e-17
29	PHYA4_AVESA (P06594) Phytochrome A type 4 (AP4)	87	5e-17
30	PHYA3_AVESA (P06593) Phytochrome A type 3 (AP3)	83	7e-16
31	PHYE_ARATH (P42498) Phytochrome E	82	1e-15
32	PHYA_ORYSA (P10931) Phytochrome A	82	2e-15
33	PHYA_SORBI (P93526) Phytochrome a	80	8e-15
34	PHYA1_MAIZE (P19862) Phytochrome A	79	2e-14
35	BVGS_BORPA (P40330) Virulence sensor protein bvgS precursor (EC ...	47	7e-05
36	BVGS_BORBR (P26762) Virulence sensor protein bvgS precursor (EC ...	46	1e-04
37	BVGS_BORPE (P16575) Virulence sensor protein bvgS precursor (EC ...	45	2e-04
38	RCSC_ECOLI (P14376) Sensor kinase protein rcsC (EC 2.7.13.3) (Ca...	45	3e-04
39	GACS_PSESY (P48027) Sensor protein gacS (EC 2.7.13.3)	43	8e-04
40	RCSC_SALTY (P58662) Sensor protein rcsC (EC 2.7.13.3) (Capsular ...	43	8e-04
41	RCSC_SALTI (Q56128) Sensor protein rcsC (EC 2.7.13.3) (Capsular ...	43	8e-04
42	RPFC_XANCP (P0C0F6) Sensory/regulatory protein rpfC (EC 2.7.13.3)	40	0.005
43	RPFC_XANC8 (P0C0F7) Sensory/regulatory protein rpfC (EC 2.7.13.3)	40	0.005
44	BARA_SHIFL (P59342) Signal transduction histidine-protein kinase...	40	0.007
45	BARA_ECOLI (P0AEC5) Signal transduction histidine-protein kinase...	40	0.007
46	BARA_ECOL6 (P0AEC6) Signal transduction histidine-protein kinase...	40	0.007
47	BARA_ECO57 (P0AEC7) Signal transduction histidine-protein kinase...	40	0.007
48	MAK2_SCHPO (O14002) Peroxide stress-activated histidine kinase m...	38	0.033
49	CUSS_ECO57 (Q8XBY4) Sensor kinase cusS (EC 2.7.13.3)	37	0.043
50	SASA_SYNP7 (Q06904) Adaptive-response sensory-kinase sasA (EC 2....	37	0.056
51	SASA_PROMM (Q7V6P7) Adaptive-response sensory-kinase sasA (EC 2....	37	0.073
52	DCTB_RHILE (P10047) C4-dicarboxylate transport sensor protein dc...	36	0.096
53	TCSB_EMENI (Q9P4U6) Two-component system protein B precursor (EC...	34	0.47
54	CUSS_ECOLI (P77485) Sensor kinase cusS (EC 2.7.13.3)	33	0.62
55	SYV_ENTFA (Q82ZW6) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--t...	33	0.81
56	LUXQ_VIBCH (Q9KLK7) Autoinducer 2 sensor kinase/phosphatase luxQ...	33	0.81
57	DCTB_RHIME (P13633) C4-dicarboxylate transport sensor protein dc...	32	1.4
58	CUSS_ECOL6 (Q8FK37) Sensor kinase cusS (EC 2.7.13.3)	32	1.8
59	PGTB_SALTY (P37433) Phosphoglycerate transport system sensor pro...	32	1.8
60	TMPSD_HUMAN (Q9BYE2) Transmembrane protease, serine 13 (EC 3.4.2...	31	3.1
61	MAK1_SCHPO (Q9P7Q7) Peroxide stress-activated histidine kinase m...	31	4.0
62	SYV_BACSK (Q5WEQ4) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--t...	30	5.2
63	RPOC2_LOTJA (Q9BBS7) DNA-directed RNA polymerase beta'' chain (E...	30	6.9
64	RESE_BACSU (P35164) Sensor protein resE (EC 2.7.13.3)	30	6.9
65	EVGS_ECOLI (P30855) Sensor protein evgS precursor (EC 2.7.13.3)	30	6.9
66	EVGS_ECO57 (P58402) Sensor protein evgS precursor (EC 2.7.13.3)	30	6.9
67	NTRB_BRASR (P10578) Nitrogen regulation protein ntrB (EC 2.7.13.3)	30	9.0
68	LEFTB_MOUSE (P57785) Left-right determination factor B precursor...	30	9.0

>PHYC_SORBI (P93528) Phytochrome C|
          Length = 1135

 Score =  267 bits (683), Expect = 2e-71
 Identities = 130/151 (86%), Positives = 144/151 (95%)
 Frame = -3

Query: 683  LNTVLMQGMSLSKEKQISLDRDWPVEVSSMYLYGDNLRLQQVLADYLACTLQFTRPAEGP 504
            LNTVLMQG+ L KEK+IS++RDWPVE+S MYLYGDNLRLQQVLADYLAC LQFT+PAEGP
Sbjct: 974  LNTVLMQGIPLGKEKRISIERDWPVEISRMYLYGDNLRLQQVLADYLACALQFTQPAEGP 1033

Query: 503  IVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFRHGPGVSREGLGLHISQKL 324
            IVLQVIPKKE+IGSGMQIAHLEFR+VHPAPGVPEALIQEMFRH P VSREGLGL+I QKL
Sbjct: 1034 IVLQVIPKKENIGSGMQIAHLEFRIVHPAPGVPEALIQEMFRHNPEVSREGLGLYICQKL 1093

Query: 323  VKTMSGTVQYLREAESSSFIVLVEFPVAQLN 231
            VKTMSGTVQYLREA++SSFI+L+EFPVAQL+
Sbjct: 1094 VKTMSGTVQYLREADTSSFIILIEFPVAQLS 1124

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>PHYC_ORYSA (Q9ZWI9) Phytochrome C|
          Length = 1137

 Score =  261 bits (668), Expect = 1e-69
 Identities = 131/151 (86%), Positives = 141/151 (93%)
 Frame = -3

Query: 683  LNTVLMQGMSLSKEKQISLDRDWPVEVSSMYLYGDNLRLQQVLADYLACTLQFTRPAEGP 504
            LNTVLMQ M  SKEKQIS+DRDWP EVS M+L GDNLRLQQVLAD+LAC LQFT+PAEGP
Sbjct: 976  LNTVLMQAMPQSKEKQISIDRDWPAEVSCMHLCGDNLRLQQVLADFLACMLQFTQPAEGP 1035

Query: 503  IVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFRHGPGVSREGLGLHISQKL 324
            IVLQVIP+ E+IGSGMQIAHLEFR+VHPAPGVPEALIQEMFRH PG SREGLGL+ISQKL
Sbjct: 1036 IVLQVIPRMENIGSGMQIAHLEFRLVHPAPGVPEALIQEMFRHSPGASREGLGLYISQKL 1095

Query: 323  VKTMSGTVQYLREAESSSFIVLVEFPVAQLN 231
            VKTMSGTVQYLRE+ESSSFIVLVEFPVAQL+
Sbjct: 1096 VKTMSGTVQYLRESESSSFIVLVEFPVAQLS 1126

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>PHY_PICAB (Q40762) Phytochrome|
          Length = 1136

 Score =  158 bits (399), Expect = 2e-38
 Identities = 79/149 (53%), Positives = 110/149 (73%)
 Frame = -3

Query: 683  LNTVLMQGMSLSKEKQISLDRDWPVEVSSMYLYGDNLRLQQVLADYLACTLQFTRPAEGP 504
            L+ V+ QGM LS+EK + L RD P E+ +M LYGD LRLQQ+L+++L   L+F+  +EG 
Sbjct: 985  LDAVVSQGMILSREKGLQLIRDSPEEIKTMCLYGDQLRLQQILSNFLINALRFST-SEGW 1043

Query: 503  IVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFRHGPGVSREGLGLHISQKL 324
            +  +V+P K H+GSG+ + H+EFR+ H   G+PE LI+EMF H   + +EGLGL++ Q+L
Sbjct: 1044 VGNKVVPTKRHLGSGVNVMHMEFRITHSGQGIPEELIKEMFVHNQDMFQEGLGLYMCQQL 1103

Query: 323  VKTMSGTVQYLREAESSSFIVLVEFPVAQ 237
            VK M+G VQYLREA  SSFI+ VEFP+AQ
Sbjct: 1104 VKIMNGDVQYLREAGRSSFIINVEFPLAQ 1132

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>PHY1_SELMA (Q01549) Phytochrome 1|
          Length = 1134

 Score =  149 bits (376), Expect = 8e-36
 Identities = 70/149 (46%), Positives = 106/149 (71%)
 Frame = -3

Query: 683  LNTVLMQGMSLSKEKQISLDRDWPVEVSSMYLYGDNLRLQQVLADYLACTLQFTRPAEGP 504
            ++ V+ QGM  SKEK + L R+ P E+ +M+LYGD +RLQQVLAD+L   ++FT  +E  
Sbjct: 973  MDAVISQGMITSKEKNLQLIRETPKEIKAMFLYGDQVRLQQVLADFLLNAIRFTPSSENW 1032

Query: 503  IVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFRHGPGVSREGLGLHISQKL 324
            + ++V   ++ +G  + + HLEFR+ HP  G+PE L+QEMF  G G+++EGLGL + +KL
Sbjct: 1033 VGIKVATSRKRLGGVVHVMHLEFRITHPGVGLPEELVQEMFDRGRGMTQEGLGLSMCRKL 1092

Query: 323  VKTMSGTVQYLREAESSSFIVLVEFPVAQ 237
            VK M+G V+Y+REA  + F+V +E P+AQ
Sbjct: 1093 VKLMNGEVEYIREAGKNYFLVSLELPLAQ 1121

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>PHYC_ARATH (P14714) Phytochrome C|
          Length = 1111

 Score =  149 bits (375), Expect = 1e-35
 Identities = 80/150 (53%), Positives = 109/150 (72%), Gaps = 3/150 (2%)
 Frame = -3

Query: 683  LNTVLMQGMSLSKEKQISLDRDWPVEVSSMYLYGDNLRLQQVLADYLACTLQFTRPAEGP 504
            L  V+ Q M LS E+++ +  D+P EVSSM LYGDNLRLQQ+L++ L  +++FT    G 
Sbjct: 961  LEAVVKQVMELSIERKVQISCDYPQEVSSMRLYGDNLRLQQILSETLLSSIRFTPALRGL 1020

Query: 503  IV-LQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFRH-GPGVSREGLGLHISQ 330
             V  +VI + E IG  M+   LEFR++HPAPG+PE L++EMF+    G SREGLGLHI+Q
Sbjct: 1021 CVSFKVIARIEAIGKRMKRVELEFRIIHPAPGLPEDLVREMFQPLRKGTSREGLGLHITQ 1080

Query: 329  KLVKTMS-GTVQYLREAESSSFIVLVEFPV 243
            KLVK M  GT++YLRE+E S+F++L EFP+
Sbjct: 1081 KLVKLMERGTLRYLRESEMSAFVILTEFPL 1110

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>PHY1_PHYPA (P36505) Phytochrome 1|
          Length = 1132

 Score =  148 bits (374), Expect = 1e-35
 Identities = 69/149 (46%), Positives = 107/149 (71%)
 Frame = -3

Query: 683  LNTVLMQGMSLSKEKQISLDRDWPVEVSSMYLYGDNLRLQQVLADYLACTLQFTRPAEGP 504
            +N V+ QGM+ S+EK + + R+ P E+++M L GD +RLQQVL+D+L  T++FT   EG 
Sbjct: 967  MNAVISQGMTTSREKGLQIFRETPREINTMRLLGDQIRLQQVLSDFLLNTVRFTPSPEGW 1026

Query: 503  IVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFRHGPGVSREGLGLHISQKL 324
            + ++V+P ++ +G  + + HLEFRV HP  G+PE L+ EM+  G G+++EGLGL++ +KL
Sbjct: 1027 VKIKVVPTRKRLGGSVHVVHLEFRVSHPGAGLPEELVLEMYDRGKGMTQEGLGLNMCRKL 1086

Query: 323  VKTMSGTVQYLREAESSSFIVLVEFPVAQ 237
            V+ M+G V Y+REA    F+V VE P+AQ
Sbjct: 1087 VRLMNGDVHYVREAMQCYFVVNVELPMAQ 1115

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>PHY2_CERPU (Q39557) Phytochrome 2|
          Length = 1121

 Score =  145 bits (365), Expect = 1e-34
 Identities = 66/149 (44%), Positives = 107/149 (71%)
 Frame = -3

Query: 683  LNTVLMQGMSLSKEKQISLDRDWPVEVSSMYLYGDNLRLQQVLADYLACTLQFTRPAEGP 504
            ++ V+ QGM+ S+EK + + R+ P E+S+M L+GD +RLQQVL+D+L   ++FT  +EG 
Sbjct: 965  MDAVISQGMTTSREKGLQIIRETPREISTMRLFGDQIRLQQVLSDFLINAIRFTPSSEGW 1024

Query: 503  IVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFRHGPGVSREGLGLHISQKL 324
            + ++V+P ++ +G  + + HLEFRV HP  G+P+ L+ EM+    G+++EGLGL++ +KL
Sbjct: 1025 VKIKVVPTRKRLGGNVHVMHLEFRVSHPGGGLPDELVLEMYDRAKGMTQEGLGLNMCRKL 1084

Query: 323  VKTMSGTVQYLREAESSSFIVLVEFPVAQ 237
            V+ M+G VQY+RE     F+V VE P+AQ
Sbjct: 1085 VRLMNGDVQYVRENAQCYFVVYVELPMAQ 1113

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>PHY_PINSY (Q41046) Phytochrome|
          Length = 1131

 Score =  137 bits (345), Expect = 3e-32
 Identities = 64/149 (42%), Positives = 102/149 (68%)
 Frame = -3

Query: 683  LNTVLMQGMSLSKEKQISLDRDWPVEVSSMYLYGDNLRLQQVLADYLACTLQFTRPAEGP 504
            ++ V+ QGM + +EK + L R+ P EV +M LYGD +++QQ+LAD+L   L+FT   EG 
Sbjct: 975  IDAVVSQGMIVLREKGLQLIREIPGEVKTMRLYGDEVKIQQILADFLLNVLRFTPSPEGW 1034

Query: 503  IVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFRHGPGVSREGLGLHISQKL 324
            + ++V P  + +G G+ + HLEFR+ HP  G+P  L+Q++F      ++EG+GL + +KL
Sbjct: 1035 VAIKVFPTLKQLGGGLHVVHLEFRITHPGLGLPAELVQDLFDRSQWATQEGVGLSMCRKL 1094

Query: 323  VKTMSGTVQYLREAESSSFIVLVEFPVAQ 237
            +K M+G V+Y+RE+    F+V VEFP+AQ
Sbjct: 1095 LKLMNGDVRYIRESGICYFLVNVEFPMAQ 1123

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>PHYB_SOYBN (P42499) Phytochrome B|
          Length = 1156

 Score =  126 bits (317), Expect = 5e-29
 Identities = 62/149 (41%), Positives = 99/149 (66%)
 Frame = -3

Query: 683  LNTVLMQGMSLSKEKQISLDRDWPVEVSSMYLYGDNLRLQQVLADYLACTLQFTRPAEGP 504
            +N V+ Q + L +E+ + L RD P E+ ++ +YGD LR+QQVL+D+L   +++    +G 
Sbjct: 1002 INAVVSQVILLLRERNLQLIRDIPEEIKTLAVYGDQLRIQQVLSDFLLNIVRYAPSPDGW 1061

Query: 503  IVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFRHGPGVSREGLGLHISQKL 324
            + + V P+ + I  G+ + H EFR+V P  G+P  LIQ+MF +    ++EGLGL +S+K+
Sbjct: 1062 VEIHVRPRIKQISDGLTLLHAEFRMVCPGEGLPPELIQDMFNNSRWGTQEGLGLSMSRKI 1121

Query: 323  VKTMSGTVQYLREAESSSFIVLVEFPVAQ 237
            +K M+G VQY+REAE   F VL+E PV +
Sbjct: 1122 LKLMNGEVQYIREAERCYFYVLLELPVTR 1150

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>PHY_MOUSC (P33529) Phytochrome|
          Length = 1124

 Score =  122 bits (307), Expect = 8e-28
 Identities = 66/151 (43%), Positives = 99/151 (65%), Gaps = 2/151 (1%)
 Frame = -3

Query: 683  LNTVLMQGMSLSKEKQISLDRDWPVEVSSMYLYGDNLRLQQVLADYLACTLQFTRPAEGP 504
            +N+V+ QGM  S +K + L  D P +  S+ ++GD +RLQQVLAD+L   +QFT P  G 
Sbjct: 967  MNSVVSQGMIQSTQKNLQLYCDTPPDFKSLSVFGDQVRLQQVLADFLLNAVQFT-PPSGW 1025

Query: 503  IVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFRHGPG--VSREGLGLHISQ 330
            + ++V P  + +  G+ +A+++FRV HP  G+PE LI +MF        S+EGLGL I +
Sbjct: 1026 VEIKVEPVVKKLPGGVSVANVDFRVSHPGEGLPEDLIDQMFDRADARVKSQEGLGLSICR 1085

Query: 329  KLVKTMSGTVQYLREAESSSFIVLVEFPVAQ 237
            KLV+ M+G VQY RE E + F++ +E P+AQ
Sbjct: 1086 KLVRLMNGEVQYRREGERNFFLLQLELPLAQ 1116

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>PHYB_TOBAC (P29130) Phytochrome B|
          Length = 1132

 Score =  120 bits (302), Expect = 3e-27
 Identities = 53/149 (35%), Positives = 99/149 (66%)
 Frame = -3

Query: 683  LNTVLMQGMSLSKEKQISLDRDWPVEVSSMYLYGDNLRLQQVLADYLACTLQFTRPAEGP 504
            ++ V+ Q M L +E+ + L RD P E+ ++ ++GD +R+QQVLAD+L   +++    +G 
Sbjct: 977  IDAVVSQVMLLLRERSVQLIRDIPEEIKTLTVHGDQVRIQQVLADFLLNMVRYAPSPDGW 1036

Query: 503  IVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFRHGPGVSREGLGLHISQKL 324
            + +Q+ P  + I   + + H+EFR+V P  G+P  L+Q+MF     V++EGLGL + +K+
Sbjct: 1037 VEIQLQPNMKQISDEVTVVHIEFRIVCPGEGLPPELVQDMFHSSRWVTKEGLGLSMCRKI 1096

Query: 323  VKTMSGTVQYLREAESSSFIVLVEFPVAQ 237
            +K M+G +QY+RE+E   F+++++ P+ +
Sbjct: 1097 LKLMNGDIQYIRESERCYFLIILDLPMTR 1125

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>PHYB_SOLTU (P34094) Phytochrome B|
          Length = 1130

 Score =  119 bits (298), Expect = 9e-27
 Identities = 53/149 (35%), Positives = 98/149 (65%)
 Frame = -3

Query: 683  LNTVLMQGMSLSKEKQISLDRDWPVEVSSMYLYGDNLRLQQVLADYLACTLQFTRPAEGP 504
            ++ V+ Q M L +EK + L RD P E+ ++ ++GD +R+QQVLAD+L   +++    +G 
Sbjct: 975  IDAVVSQVMLLLREKGVQLIRDIPEEIKTLTVHGDQVRIQQVLADFLLNMVRYAPSPDGW 1034

Query: 503  IVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFRHGPGVSREGLGLHISQKL 324
            + +Q+ P    I  G+ + H+E R++ P  G+P  L+Q+MF     V++EGLGL + +K+
Sbjct: 1035 VEIQLRPSMMPISDGVTVVHIELRIICPGEGLPPELVQDMFHSSRWVTQEGLGLSMCRKM 1094

Query: 323  VKTMSGTVQYLREAESSSFIVLVEFPVAQ 237
            +K M+G +QY+RE+E   F+++++ P+ +
Sbjct: 1095 LKLMNGEIQYIRESERCYFLIILDLPMTR 1123

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>PHYB1_LYCES (Q9ZS62) Phytochrome B1|
          Length = 1131

 Score =  118 bits (295), Expect = 2e-26
 Identities = 53/149 (35%), Positives = 97/149 (65%)
 Frame = -3

Query: 683  LNTVLMQGMSLSKEKQISLDRDWPVEVSSMYLYGDNLRLQQVLADYLACTLQFTRPAEGP 504
            ++ V+ Q M L +EK + L RD P E+ ++ ++GD +R+QQVLAD+L   +++    +G 
Sbjct: 976  IDAVVSQVMLLLREKGVQLIRDIPEEIKTLTVHGDQVRIQQVLADFLLNMVRYAPSPDGW 1035

Query: 503  IVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFRHGPGVSREGLGLHISQKL 324
            + +Q+ P    I  G  + H+E R++ P  G+P  L+Q+MF     V++EGLGL + +K+
Sbjct: 1036 VEIQLRPSMMPISDGATVVHIELRIICPGEGLPPELVQDMFHSSRWVTQEGLGLSMCRKM 1095

Query: 323  VKTMSGTVQYLREAESSSFIVLVEFPVAQ 237
            +K M+G +QY+RE+E   F+++++ P+ +
Sbjct: 1096 LKLMNGEIQYIRESERCYFMIILDLPMTR 1124

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>PHYD_ARATH (P42497) Phytochrome D|
          Length = 1164

 Score =  117 bits (294), Expect = 2e-26
 Identities = 60/146 (41%), Positives = 89/146 (60%)
 Frame = -3

Query: 680  NTVLMQGMSLSKEKQISLDRDWPVEVSSMYLYGDNLRLQQVLADYLACTLQFTRPAEGPI 501
            N V+ Q M + +E+ + L R+ P EV SM +YGD +RLQQVLA++L   +++  P EG +
Sbjct: 1011 NAVVSQVMLVVRERNLQLIRNIPTEVKSMAVYGDQIRLQQVLAEFLLSIVRYA-PMEGSV 1069

Query: 500  VLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFRHGPGVSREGLGLHISQKLV 321
             L + P    +  G     LEFR+     GVP   +Q+MF      S EGLGL + +K++
Sbjct: 1070 ELHLCPTLNQMADGFSAVRLEFRMACAGEGVPPEKVQDMFHSSRWTSPEGLGLSVCRKIL 1129

Query: 320  KTMSGTVQYLREAESSSFIVLVEFPV 243
            K M+G VQY+RE E S F++++E PV
Sbjct: 1130 KLMNGGVQYIREFERSYFLIVIELPV 1155

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>PHYA_CUCPE (P06592) Phytochrome A|
          Length = 1124

 Score =  115 bits (287), Expect = 2e-25
 Identities = 66/152 (43%), Positives = 90/152 (59%), Gaps = 4/152 (2%)
 Frame = -3

Query: 683  LNTVLM----QGMSLSKEKQISLDRDWPVEVSSMYLYGDNLRLQQVLADYLACTLQFTRP 516
            L+ VLM    Q M   K K I +  + P E  S  LYGD+LRLQQVLAD+L  ++ +  P
Sbjct: 968  LHEVLMVSISQVMLKIKGKGIQIVNETPEEAMSETLYGDSLRLQQVLADFLLISVSYA-P 1026

Query: 515  AEGPIVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFRHGPGVSREGLGLHI 336
            + G + +     K  +G  + + HLEFR+ +   G+PE+L+ EMF      S EG  L I
Sbjct: 1027 SGGQLTISTDVTKNQLGKSVHLVHLEFRITYAGGGIPESLLNEMFGSEEDASEEGFSLLI 1086

Query: 335  SQKLVKTMSGTVQYLREAESSSFIVLVEFPVA 240
            S+KLVK M+G V+Y+REA  SSFI+ VE   A
Sbjct: 1087 SRKLVKLMNGDVRYMREAGKSSFIITVELAAA 1118

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>PHYA_ARATH (P14712) Phytochrome A|
          Length = 1122

 Score =  114 bits (286), Expect = 2e-25
 Identities = 65/152 (42%), Positives = 91/152 (59%), Gaps = 4/152 (2%)
 Frame = -3

Query: 683  LNTVLM----QGMSLSKEKQISLDRDWPVEVSSMYLYGDNLRLQQVLADYLACTLQFTRP 516
            LN VL     Q M  S  K + +  +   EV S  LYGD++RLQQVLAD++   + FT P
Sbjct: 970  LNEVLTASTSQVMMKSNGKSVRITNETGEEVMSDTLYGDSIRLQQVLADFMLMAVNFT-P 1028

Query: 515  AEGPIVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFRHGPGVSREGLGLHI 336
            + G + +    +K+ +G  + +A+LE R+ H   G+PE L+ +MF     VS EGL L +
Sbjct: 1029 SGGQLTVSASLRKDQLGRSVHLANLEIRLTHTGAGIPEFLLNQMFGTEEDVSEEGLSLMV 1088

Query: 335  SQKLVKTMSGTVQYLREAESSSFIVLVEFPVA 240
            S+KLVK M+G VQYLR+A  SSFI+  E   A
Sbjct: 1089 SRKLVKLMNGDVQYLRQAGKSSFIITAELAAA 1120

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>PHYA_PEA (P15001) Phytochrome A|
          Length = 1124

 Score =  112 bits (281), Expect = 8e-25
 Identities = 64/148 (43%), Positives = 89/148 (60%)
 Frame = -3

Query: 683  LNTVLMQGMSLSKEKQISLDRDWPVEVSSMYLYGDNLRLQQVLADYLACTLQFTRPAEGP 504
            L T L Q M+ S  K I +  D    ++   LYGD+LRLQQVLAD+L  ++  T P  G 
Sbjct: 973  LVTSLSQVMNRSNTKGIRIANDVAEHIARETLYGDSLRLQQVLADFLLISINST-PNGGQ 1031

Query: 503  IVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFRHGPGVSREGLGLHISQKL 324
            +V+     KE +G  + + +LE  + H   GVPEA + +MF +    S EG+ LHIS+KL
Sbjct: 1032 VVIAASLTKEQLGKSVHLVNLELSITHGGSGVPEAALNQMFGNNVLESEEGISLHISRKL 1091

Query: 323  VKTMSGTVQYLREAESSSFIVLVEFPVA 240
            +K M+G V+YL+EA  SSFI+ VE   A
Sbjct: 1092 LKLMNGDVRYLKEAGKSSFILSVELAAA 1119

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>PHYA_LATSA (P93673) Phytochrome type A|
          Length = 1124

 Score =  112 bits (280), Expect = 1e-24
 Identities = 64/148 (43%), Positives = 89/148 (60%)
 Frame = -3

Query: 683  LNTVLMQGMSLSKEKQISLDRDWPVEVSSMYLYGDNLRLQQVLADYLACTLQFTRPAEGP 504
            L T L Q M+ S  K I +  D    ++   LYGD+LRLQQVLAD+L  ++  T P  G 
Sbjct: 973  LVTSLSQVMNRSNTKGIRIANDVAEHIAKESLYGDSLRLQQVLADFLLISINST-PNGGQ 1031

Query: 503  IVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFRHGPGVSREGLGLHISQKL 324
            +V+     KE +G  + + +LE  + H   GVPEA + +MF +    S EG+ LHIS+KL
Sbjct: 1032 VVIASSLTKEQLGKSVHLVNLELSITHGGSGVPEAALNQMFGNNVLESEEGISLHISRKL 1091

Query: 323  VKTMSGTVQYLREAESSSFIVLVEFPVA 240
            +K M+G V+YL+EA  SSFI+ VE   A
Sbjct: 1092 LKLMNGDVRYLKEAGKSSFILSVELAAA 1119

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>PHYA_PETCR (P55141) Phytochrome A|
          Length = 1129

 Score =  110 bits (275), Expect = 4e-24
 Identities = 59/137 (43%), Positives = 85/137 (62%)
 Frame = -3

Query: 650  SKEKQISLDRDWPVEVSSMYLYGDNLRLQQVLADYLACTLQFTRPAEGPIVLQVIPKKEH 471
            S  K I +  ++  E+ S  LYGD+LRLQ+VLAD+++  +  T P  G + + V   +++
Sbjct: 989  SNGKAIQVVDNFSEEMMSETLYGDSLRLQKVLADFMSVCVNLT-PVGGHLGISVTLTEDN 1047

Query: 470  IGSGMQIAHLEFRVVHPAPGVPEALIQEMFRHGPGVSREGLGLHISQKLVKTMSGTVQYL 291
            +G  +Q+ HLEFR+ H   GVPE  + +MF      S EG+ L IS+KLVK M+G V YL
Sbjct: 1048 LGQSVQLVHLEFRITHTGAGVPEEAVSQMFGSDSETSEEGISLLISRKLVKLMNGDVHYL 1107

Query: 290  REAESSSFIVLVEFPVA 240
            REA  S+FI+ VE   A
Sbjct: 1108 REAGKSTFIITVELAAA 1124

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>PHYA_SOLTU (P30733) Phytochrome A|
          Length = 1123

 Score =  108 bits (271), Expect = 1e-23
 Identities = 63/144 (43%), Positives = 88/144 (61%)
 Frame = -3

Query: 671  LMQGMSLSKEKQISLDRDWPVEVSSMYLYGDNLRLQQVLADYLACTLQFTRPAEGPIVLQ 492
            + Q M  S  K I +  D   ++ +  LYGD+ RLQQVLA++L  ++  T P+ G + + 
Sbjct: 977  ISQVMMKSNGKNIMISNDMVEDLLNETLYGDSPRLQQVLANFLLVSVNST-PSGGKLSIS 1035

Query: 491  VIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFRHGPGVSREGLGLHISQKLVKTM 312
                K+ IG  +Q+A LEFR+ H   GVPE L+ +MF      S EG+ L +S+KLVK M
Sbjct: 1036 GKLTKDRIGESVQLALLEFRIRHTGGGVPEELLSQMFGSEADASEEGISLLVSRKLVKLM 1095

Query: 311  SGTVQYLREAESSSFIVLVEFPVA 240
            +G VQYLREA  S+FI+ VE  VA
Sbjct: 1096 NGEVQYLREAGRSTFIISVELAVA 1119

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>PHYB_ARATH (P14713) Phytochrome B|
          Length = 1172

 Score =  107 bits (268), Expect = 3e-23
 Identities = 50/147 (34%), Positives = 92/147 (62%)
 Frame = -3

Query: 683  LNTVLMQGMSLSKEKQISLDRDWPVEVSSMYLYGDNLRLQQVLADYLACTLQFTRPAEGP 504
            +N ++ Q M L +++ + L RD P E+ S+ ++GD +R+QQ+LA++L   +++  P++  
Sbjct: 1006 INAIVSQAMFLLRDRGLQLIRDIPEEIKSIEVFGDQIRIQQLLAEFLLSIIRYA-PSQEW 1064

Query: 503  IVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFRHGPGVSREGLGLHISQKL 324
            + + +    + +  G      EFR+  P  G+P  L+++MF      S EGLGL + +K+
Sbjct: 1065 VEIHLSQLSKQMADGFAAIRTEFRMACPGEGLPPELVRDMFHSSRWTSPEGLGLSVCRKI 1124

Query: 323  VKTMSGTVQYLREAESSSFIVLVEFPV 243
            +K M+G VQY+RE+E S F++++E PV
Sbjct: 1125 LKLMNGEVQYIRESERSYFLIILELPV 1151

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>PHYB_SORBI (P93527) Phytochrome B|
          Length = 1178

 Score =  107 bits (266), Expect = 4e-23
 Identities = 53/146 (36%), Positives = 84/146 (57%)
 Frame = -3

Query: 683  LNTVLMQGMSLSKEKQISLDRDWPVEVSSMYLYGDNLRLQQVLADYLACTLQFTRPAEGP 504
            +N V+ Q M L +E+ + L RD P E+     YGD  R+QQVLAD+L   ++      G 
Sbjct: 1022 MNAVVSQAMLLLRERDLQLIRDIPDEIKDASAYGDQFRIQQVLADFLLSMVRSAPSENGW 1081

Query: 503  IVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFRHGPGVSREGLGLHISQKL 324
            + +QV P  +    G       FR  +P  G+P  ++Q+MF +    ++EG+GL   +K+
Sbjct: 1082 VEIQVRPNVKQNSDGTDTELFIFRFTYPGEGLPADIVQDMFSNSQWSTQEGVGLSTCRKI 1141

Query: 323  VKTMSGTVQYLREAESSSFIVLVEFP 246
            +K M G VQY+RE+E S F++++E P
Sbjct: 1142 LKLMGGEVQYIRESERSFFLIVLELP 1167

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>PHYE_IPONI (P55004) Phytochrome E|
          Length = 1115

 Score =  105 bits (261), Expect = 2e-22
 Identities = 54/146 (36%), Positives = 91/146 (62%), Gaps = 1/146 (0%)
 Frame = -3

Query: 683  LNTVLMQGMSLSKEKQISLDRDWPVEVSSMYLYGDNLRLQQVLADYLACTLQFTRPAEGP 504
            ++ V+ Q M   KEK + L  D P ++ S+ +YGD ++LQ VL+D+L   ++     +G 
Sbjct: 953  IDAVVSQVMIPLKEKNLQLLHDIPDQIKSLPIYGDQIKLQLVLSDFLLSIVRHAPSPDGW 1012

Query: 503  IVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFRHGP-GVSREGLGLHISQK 327
            + ++V P  + I  G    H++FR+ HP  G+P ALI++M R G    ++EG+ LH+SQK
Sbjct: 1013 VEIRVSPGLKLIQDGNVFIHIQFRMTHPGQGLPSALIEDMVRGGTRWTTQEGVVLHLSQK 1072

Query: 326  LVKTMSGTVQYLREAESSSFIVLVEF 249
            LV+ M+G V Y+RE +   F++ ++F
Sbjct: 1073 LVRMMNGHVHYVREQQKCYFLIDLDF 1098

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>PHYB_ORYSA (P25764) Phytochrome B|
          Length = 1171

 Score =  105 bits (261), Expect = 2e-22
 Identities = 54/149 (36%), Positives = 83/149 (55%)
 Frame = -3

Query: 683  LNTVLMQGMSLSKEKQISLDRDWPVEVSSMYLYGDNLRLQQVLADYLACTLQFTRPAEGP 504
            +N V+ Q M   +E+ + L RD P E+     YGD  R+QQVL D+L   ++F     G 
Sbjct: 1015 MNAVVSQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAENGW 1074

Query: 503  IVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFRHGPGVSREGLGLHISQKL 324
            + +QV P  +    G       FR   P  G+P  ++Q+MF +    ++EG+GL I +K+
Sbjct: 1075 VEIQVRPNIKQNSDGTDTMLFPFRFACPGEGLPPEIVQDMFSNSRWTTQEGIGLSICRKI 1134

Query: 323  VKTMSGTVQYLREAESSSFIVLVEFPVAQ 237
            +K M G VQY+RE+E S F +++E P  Q
Sbjct: 1135 LKLMGGEVQYIRESERSFFHIVLELPQPQ 1163

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>PHYA1_TOBAC (P33530) Phytochrome A1|
          Length = 1124

 Score =  104 bits (260), Expect = 2e-22
 Identities = 63/144 (43%), Positives = 86/144 (59%)
 Frame = -3

Query: 671  LMQGMSLSKEKQISLDRDWPVEVSSMYLYGDNLRLQQVLADYLACTLQFTRPAEGPIVLQ 492
            + Q M  S  K I +  D   ++ +  LYGD+ RLQQVLA++L   +  T P+ G + + 
Sbjct: 977  ISQIMMKSNGKNIMIVNDMVEDLLNETLYGDSPRLQQVLANFLLVCVNST-PSGGQLSIS 1035

Query: 491  VIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFRHGPGVSREGLGLHISQKLVKTM 312
                K+ IG  +Q+A LE R+ H   GVPE L+ +MF      S EG+ L IS+KLVK M
Sbjct: 1036 GTLTKDRIGESVQLALLEVRISHTGGGVPEELLSQMFGTEAEASEEGISLLISRKLVKLM 1095

Query: 311  SGTVQYLREAESSSFIVLVEFPVA 240
            +G VQYLREA  S+FI+ VE  VA
Sbjct: 1096 NGEVQYLREAGRSTFIISVELAVA 1119

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>PHYA_SOYBN (P42500) Phytochrome A|
          Length = 1131

 Score =  103 bits (258), Expect = 4e-22
 Identities = 62/148 (41%), Positives = 83/148 (56%)
 Frame = -3

Query: 683  LNTVLMQGMSLSKEKQISLDRDWPVEVSSMYLYGDNLRLQQVLADYLACTLQFTRPAEGP 504
            L T L Q M  S  K I +  D    +    LYGD+LRLQQVLAD+L  ++ FT P  G 
Sbjct: 980  LVTSLSQVMEKSNGKSIRIVNDVAGHIMMETLYGDSLRLQQVLADFLLISINFT-PNGGQ 1038

Query: 503  IVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFRHGPGVSREGLGLHISQKL 324
            +V+     KE +G  + +  LE  + H   GVPE L+ +MF +    S EG+ L I  KL
Sbjct: 1039 VVVAGSLTKEQLGKSVHLVKLELSITHGGSGVPEVLLNQMFGNNGLESEEGISLLIRAKL 1098

Query: 323  VKTMSGTVQYLREAESSSFIVLVEFPVA 240
            +K M+G V+YLREA  S+FI+  E   A
Sbjct: 1099 LKLMNGDVRYLREAGKSAFILSAELAAA 1126

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>PHY_ADICA (P42496) Phytochrome 1|
          Length = 1118

 Score =  100 bits (249), Expect = 4e-21
 Identities = 52/152 (34%), Positives = 85/152 (55%), Gaps = 4/152 (2%)
 Frame = -3

Query: 683  LNTVLMQGMSLSKEKQISLDRDWPVEVSSMYLYGDNLRLQQVLADYLACTLQFTRPAEGP 504
            ++ V+ QGM+ S+ K + +  + P +V  M L+GD  RLQQVLAD L C +         
Sbjct: 958  IDAVISQGMAASRGKGVQILTEIPNDVKLMCLFGDQARLQQVLADLLFCAINHATTTNED 1017

Query: 503  ----IVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFRHGPGVSREGLGLHI 336
                + ++V   K  +  G+ + H EFR+ H   G+ EAL++EM       + EGL + I
Sbjct: 1018 EKDWVTIKVSRTKTRLDDGVHLMHFEFRISHSGQGISEALVEEMTNKSQKWTPEGLAISI 1077

Query: 335  SQKLVKTMSGTVQYLREAESSSFIVLVEFPVA 240
            S  L++ M+G V+Y  +A +  F+V ++FP+A
Sbjct: 1078 SCTLIRLMNGDVKYTTDAGNKCFLVTIQFPLA 1109

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>PHYA_POPTM (O49934) Phytochrome A|
          Length = 1125

 Score = 89.0 bits (219), Expect = 1e-17
 Identities = 52/115 (45%), Positives = 74/115 (64%), Gaps = 2/115 (1%)
 Frame = -3

Query: 590  LYGDNLRLQQVLADYLACTLQFTRPAEGPIVLQVIPKKEHIGSGMQI-AHL-EFRVVHPA 417
            LYGD++RLQQVLAD+  C L  T P+ G + +     +  +G+ + I  H  + R+ H  
Sbjct: 1001 LYGDSIRLQQVLADFCRCQLILT-PSGGLLTVSASFFQRPVGAILFILVHSGKLRIRHLG 1059

Query: 416  PGVPEALIQEMFRHGPGVSREGLGLHISQKLVKTMSGTVQYLREAESSSFIVLVE 252
             G+PEAL+ +M+    G S EG+ L IS+KLVK M+G V+Y+REA  SSFI+ VE
Sbjct: 1060 AGIPEALVDQMYGEDTGASVEGISLVISRKLVKLMNGDVRYMREAGKSSFIISVE 1114

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>PHYA4_AVESA (P06594) Phytochrome A type 4 (AP4)|
          Length = 1128

 Score = 87.0 bits (214), Expect = 5e-17
 Identities = 50/135 (37%), Positives = 78/135 (57%), Gaps = 1/135 (0%)
 Frame = -3

Query: 641  KQISLDRDWPVEVSSMYLYGDNLRLQQVLADYLACTLQFTRPAEGPIVLQVIPKKEHIGS 462
            K I +  + P       +YGD +RLQQ+L+D+L  +++F+ P  G + +     K  IG 
Sbjct: 989  KGIRISCNLPERFMKQSVYGDGVRLQQILSDFLFISVKFS-PVGGSVEISSKLTKNSIGE 1047

Query: 461  GMQIAHLEFRVVHPAPGVPEALIQEMFRH-GPGVSREGLGLHISQKLVKTMSGTVQYLRE 285
             + +  LE R+ H   GVP  L+++MF       S EGLGL +S+KL++ M+G V++LRE
Sbjct: 1048 NLHLIDLELRIKHQGLGVPAELMEQMFEEDNKEQSDEGLGLLVSRKLLRLMNGDVRHLRE 1107

Query: 284  AESSSFIVLVEFPVA 240
            A  S+FI+  E   A
Sbjct: 1108 AGVSTFILTAELASA 1122

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>PHYA3_AVESA (P06593) Phytochrome A type 3 (AP3)|
          Length = 1128

 Score = 83.2 bits (204), Expect = 7e-16
 Identities = 48/135 (35%), Positives = 75/135 (55%), Gaps = 1/135 (0%)
 Frame = -3

Query: 641  KQISLDRDWPVEVSSMYLYGDNLRLQQVLADYLACTLQFTRPAEGPIVLQVIPKKEHIGS 462
            K I +  + P       +YGD +RLQQ+L+D+L  +++F+ P  G + +     K  IG 
Sbjct: 989  KGIRISCNLPERFMKQSVYGDGVRLQQILSDFLFISVKFS-PVGGSVEISSKLTKNSIGE 1047

Query: 461  GMQIAHLEFRVVHPAPGVPEALIQEMFRH-GPGVSREGLGLHISQKLVKTMSGTVQYLRE 285
             + +  LE R+ H   GVP  L+ +MF       S EGL L +S+ L++ M+G V++LRE
Sbjct: 1048 NLHLIDLELRIKHQGLGVPAELMAQMFEEDNKEQSEEGLSLLVSRNLLRLMNGDVRHLRE 1107

Query: 284  AESSSFIVLVEFPVA 240
            A  S+FI+  E   A
Sbjct: 1108 AGVSTFIITAELASA 1122

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>PHYE_ARATH (P42498) Phytochrome E|
          Length = 1112

 Score = 82.4 bits (202), Expect = 1e-15
 Identities = 46/142 (32%), Positives = 80/142 (56%), Gaps = 1/142 (0%)
 Frame = -3

Query: 683  LNTVLMQGMSLSKEKQISLDRDWPVEVSSMYLYGDNLRLQQVLADYLACTLQFTRPAEGP 504
            L+T++ Q M + +E+   L  +   E+ ++ L GD ++LQ +LAD L   +         
Sbjct: 949  LDTIISQVMIILRERNSQLRVEVAEEIKTLPLNGDRVKLQLILADLLRNIVNHAPFPNSW 1008

Query: 503  IVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFRHGPG-VSREGLGLHISQK 327
            + + + P +E      +  HL+FR++HP  G+P  ++ +MF    G V+ +GLGL +S+K
Sbjct: 1009 VGISISPGQELSRDNGRYIHLQFRMIHPGKGLPSEMLSDMFETRDGWVTPDGLGLKLSRK 1068

Query: 326  LVKTMSGTVQYLREAESSSFIV 261
            L++ M+G V Y+RE E   F V
Sbjct: 1069 LLEQMNGRVSYVREDERCFFQV 1090

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>PHYA_ORYSA (P10931) Phytochrome A|
          Length = 1128

 Score = 82.0 bits (201), Expect = 2e-15
 Identities = 46/135 (34%), Positives = 76/135 (56%), Gaps = 1/135 (0%)
 Frame = -3

Query: 641  KQISLDRDWPVEVSSMYLYGDNLRLQQVLADYLACTLQFTRPAEGPIVLQVIPKKEHIGS 462
            K I +  + P       +YGD +RLQQ+L+D+L  +++F+ P  G + +     K  IG 
Sbjct: 992  KGIRVSCNLPERYMKQTVYGDGVRLQQILSDFLFVSVKFS-PVGGSVEISCSLTKNSIGE 1050

Query: 461  GMQIAHLEFRVVHPAPGVPEALIQEMFRH-GPGVSREGLGLHISQKLVKTMSGTVQYLRE 285
             + +  LE R+ H   GVP  L+ +M+       S EG+ L +S+ L++ M+G V+++RE
Sbjct: 1051 NLHLIDLELRIKHQGKGVPADLLSQMYEDDNKEQSDEGMSLAVSRNLLRLMNGDVRHMRE 1110

Query: 284  AESSSFIVLVEFPVA 240
            A  S+FI+ VE   A
Sbjct: 1111 AGMSTFILSVELASA 1125

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>PHYA_SORBI (P93526) Phytochrome a|
          Length = 1131

 Score = 79.7 bits (195), Expect = 8e-15
 Identities = 43/135 (31%), Positives = 74/135 (54%), Gaps = 1/135 (0%)
 Frame = -3

Query: 641  KQISLDRDWPVEVSSMYLYGDNLRLQQVLADYLACTLQFTRPAEGPIVLQVIPKKEHIGS 462
            K I +  + P       +YGD +RLQQ+L+D+L  +++F+ P  G + +     K  IG 
Sbjct: 992  KGIRVACNLPERFMKQKVYGDGIRLQQILSDFLFVSVKFS-PVGGSVDISSKLTKNSIGE 1050

Query: 461  GMQIAHLEFRVVHPAPGVPEALIQEMFRH-GPGVSREGLGLHISQKLVKTMSGTVQYLRE 285
             + +   E R+ H   GVP  ++ +M+       S EGL L +S+ L++ M+G ++++RE
Sbjct: 1051 NLHLIDFELRIKHQGAGVPAEILSQMYEEDNKEPSEEGLSLLVSRNLLRLMNGNIRHIRE 1110

Query: 284  AESSSFIVLVEFPVA 240
            A  S+FI+  E   A
Sbjct: 1111 AGMSTFILTAELAAA 1125

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>PHYA1_MAIZE (P19862) Phytochrome A|
          Length = 1131

 Score = 78.6 bits (192), Expect = 2e-14
 Identities = 43/135 (31%), Positives = 74/135 (54%), Gaps = 1/135 (0%)
 Frame = -3

Query: 641  KQISLDRDWPVEVSSMYLYGDNLRLQQVLADYLACTLQFTRPAEGPIVLQVIPKKEHIGS 462
            K I +  + P       +YGD +RLQQ+++D+L  +++F+ PA G + +     K  IG 
Sbjct: 992  KGIRVACNLPERSMKQKVYGDGIRLQQIVSDFLFVSVKFS-PAGGSVDISSKLTKNSIGE 1050

Query: 461  GMQIAHLEFRVVHPAPGVPEALIQEMFRH-GPGVSREGLGLHISQKLVKTMSGTVQYLRE 285
             + +   E R+ H   GVP  ++ +M+       S EG  L +S+ L++ M+G +++LRE
Sbjct: 1051 NLHLIDFELRIKHRGAGVPAEILSQMYEEDNKEQSEEGFSLAVSRNLLRLMNGDIRHLRE 1110

Query: 284  AESSSFIVLVEFPVA 240
            A  S+FI+  E   A
Sbjct: 1111 AGMSTFILTAELAAA 1125

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>BVGS_BORPA (P40330) Virulence sensor protein bvgS precursor (EC 2.7.13.3)|
          Length = 1238

 Score = 46.6 bits (109), Expect = 7e-05
 Identities = 45/156 (28%), Positives = 77/156 (49%), Gaps = 10/156 (6%)
 Frame = -3

Query: 671  LMQGMSLSKEKQISLDRDWPVEVSSMYLYGDNLRLQQVLADYLACTLQFTRPAEGPIVLQ 492
            L  G++  K  ++ L  D  V V  + +  D LR++QVL++ +   ++FT   EG +VL 
Sbjct: 806  LFDGLARQKGIELVLKTDI-VGVDDVLI--DPLRMKQVLSNLVGNAIKFT--TEGQVVLT 860

Query: 491  VIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFRH----------GPGVSREGLGL 342
            V  + +      + AH++F V     G+ EA  +++F+           GP     GLGL
Sbjct: 861  VTARPDG-----EAAHVQFSVSDTGCGISEADQRQLFKPFSQVGGSAEAGPAPGT-GLGL 914

Query: 341  HISQKLVKTMSGTVQYLREAESSSFIVLVEFPVAQL 234
             IS++LV+ M GT+  +R A      V V+  +  +
Sbjct: 915  SISRRLVELMGGTL-VMRSAPGVGTTVSVDLRLTMI 949

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>BVGS_BORBR (P26762) Virulence sensor protein bvgS precursor (EC 2.7.13.3)|
          Length = 1238

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 10/104 (9%)
 Frame = -3

Query: 581  DNLRLQQVLADYLACTLQFTRPAEGPIVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPE 402
            D LR++QVL++ +   ++FT   EG +VL V  + +      + AH++F V     G+ E
Sbjct: 833  DPLRMKQVLSNLVGNAIKFT--TEGQVVLTVTARPDG-----EAAHVQFSVSDTGCGISE 885

Query: 401  ALIQEMFRH----------GPGVSREGLGLHISQKLVKTMSGTV 300
            A  +++F+           GP     GLGL IS++LV+ M GT+
Sbjct: 886  ADQRQLFKPFSQVGGSAEAGPAPGT-GLGLSISRRLVELMGGTL 928

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>BVGS_BORPE (P16575) Virulence sensor protein bvgS precursor (EC 2.7.13.3)|
          Length = 1238

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 34/104 (32%), Positives = 55/104 (52%), Gaps = 10/104 (9%)
 Frame = -3

Query: 581  DNLRLQQVLADYLACTLQFTRPAEGPIVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPE 402
            D LR++QVL++ +   ++FT   EG +VL V  + +        AH++F V     G+ E
Sbjct: 833  DPLRMKQVLSNLVGNAIKFT--TEGQVVLAVTARPDG-----DAAHVQFSVSDTGCGISE 885

Query: 401  ALIQEMFRH----------GPGVSREGLGLHISQKLVKTMSGTV 300
            A  +++F+           GP     GLGL IS++LV+ M GT+
Sbjct: 886  ADQRQLFKPFSQVGGSAEAGPAPGT-GLGLSISRRLVELMGGTL 928

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>RCSC_ECOLI (P14376) Sensor kinase protein rcsC (EC 2.7.13.3) (Capsular|
           synthesis regulator component C)
          Length = 949

 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 49/162 (30%), Positives = 71/162 (43%), Gaps = 13/162 (8%)
 Frame = -3

Query: 683 LNTVLMQGMSLSKEKQISL----DRDWPVEVSSMYLYGDNLRLQQVLADYLACTLQFTRP 516
           +N +    + L   KQ+ L    + D PV ++     GD +RLQQV+++ L+  ++FT  
Sbjct: 549 MNHITANYLPLVVRKQLGLYCFIEPDVPVALN-----GDPMRLQQVISNLLSNAIKFT-- 601

Query: 515 AEGPIVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPE----ALIQEMFRHGPGVSRE-- 354
             G IVL V    +         +L  RV     G+P      L    F+ G GV R   
Sbjct: 602 DTGCIVLHVRADGD---------YLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQ 652

Query: 353 --GLGLHISQKLVKTMSGTVQYLRE-AESSSFIVLVEFPVAQ 237
             GLGL I +KL+  M G +    E    S F V +    AQ
Sbjct: 653 GTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIPLYGAQ 694

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>GACS_PSESY (P48027) Sensor protein gacS (EC 2.7.13.3)|
          Length = 907

 Score = 43.1 bits (100), Expect = 8e-04
 Identities = 41/140 (29%), Positives = 68/140 (48%), Gaps = 11/140 (7%)
 Frame = -3

Query: 623 RDWPVEVSSMYLYGDNLRLQQVLADYLACTLQFTRPAEGPIVLQVIPKKEHIGSGMQIAH 444
           RD P+ +S     GD LRL+Q+L + ++  ++FTR  EG IV + + + E         H
Sbjct: 378 RDTPLALS-----GDPLRLRQILTNLVSNAIKFTR--EGTIVARAMLEDE------TEEH 424

Query: 443 LEFRVVHPAPGV------PEALIQEMFRHGPGVSRE----GLGLHISQKLVKTMSGTVQY 294
            + R+     G+        AL Q   +    +SR+    GLGL IS++L++ M G +  
Sbjct: 425 AQLRISVQDTGIGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGV 484

Query: 293 -LREAESSSFIVLVEFPVAQ 237
                E S F + ++ P A+
Sbjct: 485 DSTPGEGSEFWISLKLPKAR 504

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>RCSC_SALTY (P58662) Sensor protein rcsC (EC 2.7.13.3) (Capsular synthesis|
           regulator component C)
          Length = 948

 Score = 43.1 bits (100), Expect = 8e-04
 Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 12/140 (8%)
 Frame = -3

Query: 683 LNTVLMQGMSLSKEKQISL----DRDWPVEVSSMYLYGDNLRLQQVLADYLACTLQFTRP 516
           +N +    + L   KQ+ L    + D PV ++     GD +RLQQV+++ L+  ++FT  
Sbjct: 549 MNHITANYLPLVVRKQLGLYCFIEPDVPVSLN-----GDPMRLQQVISNLLSNAIKFT-- 601

Query: 515 AEGPIVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPE----ALIQEMFRHGPGVSRE-- 354
             G IVL V    +         +L  RV     G+P      L    F+ G GV R   
Sbjct: 602 DIGCIVLHVRCDGD---------YLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQ 652

Query: 353 --GLGLHISQKLVKTMSGTV 300
             GLGL I +KL+  M G +
Sbjct: 653 GTGLGLAICEKLISMMDGDI 672

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>RCSC_SALTI (Q56128) Sensor protein rcsC (EC 2.7.13.3) (Capsular synthesis|
           regulator component C)
          Length = 948

 Score = 43.1 bits (100), Expect = 8e-04
 Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 12/140 (8%)
 Frame = -3

Query: 683 LNTVLMQGMSLSKEKQISL----DRDWPVEVSSMYLYGDNLRLQQVLADYLACTLQFTRP 516
           +N +    + L   KQ+ L    + D PV ++     GD +RLQQV+++ L+  ++FT  
Sbjct: 549 MNHITANYLPLVVRKQLGLYCFIEPDVPVSLN-----GDPMRLQQVISNLLSNAIKFT-- 601

Query: 515 AEGPIVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPE----ALIQEMFRHGPGVSRE-- 354
             G IVL V    +         +L  RV     G+P      L    F+ G GV R   
Sbjct: 602 DIGCIVLHVRCDGD---------YLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQ 652

Query: 353 --GLGLHISQKLVKTMSGTV 300
             GLGL I +KL+  M G +
Sbjct: 653 GTGLGLAICEKLISMMDGDI 672

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>RPFC_XANCP (P0C0F6) Sensory/regulatory protein rpfC (EC 2.7.13.3)|
          Length = 677

 Score = 40.4 bits (93), Expect = 0.005
 Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 8/125 (6%)
 Frame = -3

Query: 590 LYGDNLRLQQVLADYLACTLQFTRPAEGPIVLQVIPKKEHIGSGMQIAHLEFRVVHPAPG 411
           L GD   L+QVL + +   ++FT    G ++L+V       GS      L F V     G
Sbjct: 249 LKGDTAHLRQVLLNLVGNAVKFTE--HGHVLLRVTRVS---GSAEDAVRLRFDVEDTGIG 303

Query: 410 VPEALIQEMF----RHGPGVSRE----GLGLHISQKLVKTMSGTVQYLREAESSSFIVLV 255
           VP  +   +F    +   G+SR     GLG  I++ LV+ M G++ + +E + S  +   
Sbjct: 304 VPMDMRPRLFEAFEQADVGLSRRYEGTGLGTTIAKGLVEAMGGSIGF-KENQPSGSVFWF 362

Query: 254 EFPVA 240
           E P+A
Sbjct: 363 ELPMA 367

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>RPFC_XANC8 (P0C0F7) Sensory/regulatory protein rpfC (EC 2.7.13.3)|
          Length = 677

 Score = 40.4 bits (93), Expect = 0.005
 Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 8/125 (6%)
 Frame = -3

Query: 590 LYGDNLRLQQVLADYLACTLQFTRPAEGPIVLQVIPKKEHIGSGMQIAHLEFRVVHPAPG 411
           L GD   L+QVL + +   ++FT    G ++L+V       GS      L F V     G
Sbjct: 249 LKGDTAHLRQVLLNLVGNAVKFTE--HGHVLLRVTRVS---GSAEDAVRLRFDVEDTGIG 303

Query: 410 VPEALIQEMF----RHGPGVSRE----GLGLHISQKLVKTMSGTVQYLREAESSSFIVLV 255
           VP  +   +F    +   G+SR     GLG  I++ LV+ M G++ + +E + S  +   
Sbjct: 304 VPMDMRPRLFEAFEQADVGLSRRYEGTGLGTTIAKGLVEAMGGSIGF-KENQPSGSVFWF 362

Query: 254 EFPVA 240
           E P+A
Sbjct: 363 ELPMA 367

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>BARA_SHIFL (P59342) Signal transduction histidine-protein kinase barA (EC|
           2.7.13.3)
          Length = 918

 Score = 40.0 bits (92), Expect = 0.007
 Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 8/105 (7%)
 Frame = -3

Query: 584 GDNLRLQQVLADYLACTLQFTRPAEGPIVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVP 405
           GD LRLQQ++ + +   ++FT      I+++   K+    + +QI   E ++     G+P
Sbjct: 404 GDPLRLQQIITNLVGNAIKFTENGNIDILVE---KRALSNTKVQI---EVQIRDTGIGIP 457

Query: 404 EA----LIQEMFRHGPGVSRE----GLGLHISQKLVKTMSGTVQY 294
           E     L Q   +    +SR     GLGL I+QKLV  M G + +
Sbjct: 458 ERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISF 502

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>BARA_ECOLI (P0AEC5) Signal transduction histidine-protein kinase barA (EC|
           2.7.13.3)
          Length = 918

 Score = 40.0 bits (92), Expect = 0.007
 Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 8/105 (7%)
 Frame = -3

Query: 584 GDNLRLQQVLADYLACTLQFTRPAEGPIVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVP 405
           GD LRLQQ++ + +   ++FT      I+++   K+    + +QI   E ++     G+P
Sbjct: 404 GDPLRLQQIITNLVGNAIKFTENGNIDILVE---KRALSNTKVQI---EVQIRDTGIGIP 457

Query: 404 EA----LIQEMFRHGPGVSRE----GLGLHISQKLVKTMSGTVQY 294
           E     L Q   +    +SR     GLGL I+QKLV  M G + +
Sbjct: 458 ERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISF 502

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>BARA_ECOL6 (P0AEC6) Signal transduction histidine-protein kinase barA (EC|
           2.7.13.3)
          Length = 918

 Score = 40.0 bits (92), Expect = 0.007
 Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 8/105 (7%)
 Frame = -3

Query: 584 GDNLRLQQVLADYLACTLQFTRPAEGPIVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVP 405
           GD LRLQQ++ + +   ++FT      I+++   K+    + +QI   E ++     G+P
Sbjct: 404 GDPLRLQQIITNLVGNAIKFTENGNIDILVE---KRALSNTKVQI---EVQIRDTGIGIP 457

Query: 404 EA----LIQEMFRHGPGVSRE----GLGLHISQKLVKTMSGTVQY 294
           E     L Q   +    +SR     GLGL I+QKLV  M G + +
Sbjct: 458 ERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISF 502

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>BARA_ECO57 (P0AEC7) Signal transduction histidine-protein kinase barA (EC|
           2.7.13.3)
          Length = 918

 Score = 40.0 bits (92), Expect = 0.007
 Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 8/105 (7%)
 Frame = -3

Query: 584 GDNLRLQQVLADYLACTLQFTRPAEGPIVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVP 405
           GD LRLQQ++ + +   ++FT      I+++   K+    + +QI   E ++     G+P
Sbjct: 404 GDPLRLQQIITNLVGNAIKFTENGNIDILVE---KRALSNTKVQI---EVQIRDTGIGIP 457

Query: 404 EA----LIQEMFRHGPGVSRE----GLGLHISQKLVKTMSGTVQY 294
           E     L Q   +    +SR     GLGL I+QKLV  M G + +
Sbjct: 458 ERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISF 502

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>MAK2_SCHPO (O14002) Peroxide stress-activated histidine kinase mak2 (EC|
            2.7.13.3) (Mcs4-associated kinase 2) (His-Asp
            phosphorelay kinase phk1)
          Length = 2310

 Score = 37.7 bits (86), Expect = 0.033
 Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 8/105 (7%)
 Frame = -3

Query: 590  LYGDNLRLQQVLADYLACTLQFTRPAEGPIVLQVIPKKEHIGSGMQIAHLEFRVVHPAPG 411
            L GD+ +L+QV+ + L  +++FT   EG I+L+ +   E I +      L F +     G
Sbjct: 1864 LAGDSAKLRQVITNLLGNSVKFT--TEGHILLRCMAIDEEINAEENQCKLRFEIEDTGIG 1921

Query: 410  VPEALIQEMFRHGPGV--------SREGLGLHISQKLVKTMSGTV 300
            + E  ++ +F     V           GLGL I  ++ K M G +
Sbjct: 1922 LKEEQLKLLFNPFTQVDGSTTRIYGGSGLGLSICLQICKIMDGDI 1966

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>CUSS_ECO57 (Q8XBY4) Sensor kinase cusS (EC 2.7.13.3)|
          Length = 482

 Score = 37.4 bits (85), Expect = 0.043
 Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 10/120 (8%)
 Frame = -3

Query: 584 GDNLRLQQVLADYLACTLQFTRPAEGPIVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVP 405
           GD L L++ L++ L+  L++T P E  +V               + HL  +V+   PG P
Sbjct: 371 GDPLMLRRALSNLLSNALRYTPPGEAIVV-----------RCQTVDHL-VQVIVENPGTP 418

Query: 404 EA------LIQEMFRHGPGVSREG----LGLHISQKLVKTMSGTVQYLREAESSSFIVLV 255
            A      L    +R  P   R+G    +GL I + +V    GTV     A  + F++++
Sbjct: 419 IAPEHLPRLFDRFYRVDPSRQRKGEGSGIGLAIVKSIVVAHKGTVAVTSNARGTRFVIVL 478

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>SASA_SYNP7 (Q06904) Adaptive-response sensory-kinase sasA (EC 2.7.13.3)|
           (Synechococcus adaptive sensor protein A)
          Length = 387

 Score = 37.0 bits (84), Expect = 0.056
 Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 6/144 (4%)
 Frame = -3

Query: 683 LNTVLMQGMSLSKEKQISLDRDWPVEVSSMYLYGDNLRLQQVLADYLACTLQFTRPAEGP 504
           L  VL Q     + KQ  L  D P ++ +  LY D  RL+QVL + L   +++T P  G 
Sbjct: 240 LQQVLEQLHERWRSKQQQLITDVPGDLPT--LYADPDRLRQVLVNLLDNAIKYTPPG-GT 296

Query: 503 IVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFRHGPGVSRE------GLGL 342
           I +  + +            ++  +     G+P   +  +F++   +SR+      G+GL
Sbjct: 297 ITIAALHRTSQ--------KVQISISDTGSGIPRDQLSVIFKNLVRLSRDSSQEGYGIGL 348

Query: 341 HISQKLVKTMSGTVQYLREAESSS 270
            + Q++V+   G +    E    S
Sbjct: 349 SVCQRIVQAHFGRIWVASELGQGS 372

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>SASA_PROMM (Q7V6P7) Adaptive-response sensory-kinase sasA (EC 2.7.13.3)|
          Length = 370

 Score = 36.6 bits (83), Expect = 0.073
 Identities = 32/145 (22%), Positives = 64/145 (44%), Gaps = 7/145 (4%)
 Frame = -3

Query: 644 EKQISLDRDWPVEVSSMYLYGDNLRLQQVLADYLACTLQFTRPAEGPIVLQVIPKKEHIG 465
           ++ I +  D P ++  ++   D  R++QVL + L   L+FT    G + L ++ +  H  
Sbjct: 235 DRNIEIRTDIPSDLPKVF--ADQRRMRQVLLNLLENALKFTEDG-GEVSLTMLHRTSH-- 289

Query: 464 SGMQIAHLEFRVVHPAPGVPEALIQEMF-------RHGPGVSREGLGLHISQKLVKTMSG 306
                  ++  +    PG+PE   + +F       +     S  G+GL + +++V+   G
Sbjct: 290 ------WVQVSICDNGPGIPEDEQERIFLDRVRLPQTSVSTSGFGVGLSVCRRIVEVHGG 343

Query: 305 TVQYLREAESSSFIVLVEFPVAQLN 231
            +  + E +  +   L   PV Q N
Sbjct: 344 KIWVVSEPDKGACFYLT-VPVWQRN 367

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>DCTB_RHILE (P10047) C4-dicarboxylate transport sensor protein dctB (EC|
           2.7.13.3)
          Length = 622

 Score = 36.2 bits (82), Expect = 0.096
 Identities = 34/127 (26%), Positives = 60/127 (47%), Gaps = 3/127 (2%)
 Frame = -3

Query: 632 SLDRDWPVEVSSMYLYGDNLRLQQVLADYLACTLQFTRPAEGPIVLQVIPKKEHIGSGMQ 453
           +LD D P +   + + G+ +RL+QVL + L   L+   P  G   +++   +    +GM 
Sbjct: 501 TLDIDLPPD--ELQVMGNRIRLEQVLINLLQNALEAVAPKAGEGRVEI---RTSTDAGM- 554

Query: 452 IAHLEFRVVHPAPGVPEALIQEMFRHGPGVSRE---GLGLHISQKLVKTMSGTVQYLREA 282
              +   V    PG+P  + + +F      S+E   GLGL IS+ +V    G +    ++
Sbjct: 555 ---VTVTVADNGPGIPTEIRKGLFTPF-NTSKESGLGLGLVISKDIVGDYGGRMDVASDS 610

Query: 281 ESSSFIV 261
             + FIV
Sbjct: 611 GGTRFIV 617

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>TCSB_EMENI (Q9P4U6) Two-component system protein B precursor (EC 2.7.13.3) (NHK1|
            protein) (SLN1 homolog)
          Length = 1070

 Score = 33.9 bits (76), Expect = 0.47
 Identities = 37/175 (21%), Positives = 65/175 (37%), Gaps = 53/175 (30%)
 Frame = -3

Query: 608  EVSSMYLYGDNLRLQQVLADYLACTLQFTRPAEGPIVLQV-------------------I 486
            ++  M L+GD  R+ Q+L + +  +L+FT P +G + +++                   +
Sbjct: 675  KLKDMVLWGDQHRILQILINLVGNSLKFT-PEQGTVAIRIKCVGEEKNPSASPRPESRAL 733

Query: 485  PKKEHIGSG--------------------------MQIAHLEFRVVHPAPGVPEALIQEM 384
             +   IGS                           ++   L+F V    PG+P+ L   +
Sbjct: 734  SRWRSIGSSHASSRPKTSLDRPRDGGDEETTRPPNLRTLILQFEVEDTGPGIPQHLQNRV 793

Query: 383  F--------RHGPGVSREGLGLHISQKLVKTMSGTVQYLREAESSSFIVLVEFPV 243
            F        R        GLGL I  +L + M G +Q L   +    + LV  P+
Sbjct: 794  FEPFVQGDLRLNRKYGGTGLGLSICSQLARLMRGQIQ-LNSEQGRGTLFLVRIPL 847

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>CUSS_ECOLI (P77485) Sensor kinase cusS (EC 2.7.13.3)|
          Length = 480

 Score = 33.5 bits (75), Expect = 0.62
 Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 10/118 (8%)
 Frame = -3

Query: 584 GDNLRLQQVLADYLACTLQFTRPAEGPIVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVP 405
           GD L L++ L++ L+  L++T   E  +V               + HL  +V+   PG P
Sbjct: 371 GDPLMLRRALSNLLSNALRYTPTGETIVV-----------RCQTVDHL-VQVIVENPGTP 418

Query: 404 EA------LIQEMFRHGPGVSREG----LGLHISQKLVKTMSGTVQYLREAESSSFIV 261
            A      L    +R  P   R+G    +GL I + +V    GTV    +A  + F++
Sbjct: 419 IAPEHLPRLFDRFYRVDPSRQRKGEGSGIGLAIVKSIVVAHKGTVAVTSDARGTRFVI 476

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>SYV_ENTFA (Q82ZW6) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 880

 Score = 33.1 bits (74), Expect = 0.81
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
 Frame = -3

Query: 620 DWPVEVSSMYLYGDNLRLQQVLADYLACT----LQFTRPAEGPIVLQVIPKKEHIGSGMQ 453
           DW +E+S   LYGDN   +Q     L  T    L+   P    +  ++  K  H G  + 
Sbjct: 647 DWYIEMSKEILYGDNEAAKQTTRSILVYTLDQILRLLHPIMPFVTEEIWEKIPHQGESLV 706

Query: 452 IAHLEFRVVH 423
           +A  E+ VVH
Sbjct: 707 VA--EYPVVH 714

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>LUXQ_VIBCH (Q9KLK7) Autoinducer 2 sensor kinase/phosphatase luxQ (EC 2.7.13.3)|
           (EC 3.1.3.-)
          Length = 857

 Score = 33.1 bits (74), Expect = 0.81
 Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 8/107 (7%)
 Frame = -3

Query: 581 DNLRLQQVLADYLACTLQFTRPAEGPIVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPE 402
           D +R+ Q+L + L   ++FT      + LQ+I        G  +A L  +VV    G+ E
Sbjct: 592 DQIRINQILFNLLNNAIKFTHQGSIRVELQLI-------EGDPLAQLVIQVVDTGIGIRE 644

Query: 401 ---ALIQEMFRHGPGVSR-----EGLGLHISQKLVKTMSGTVQYLRE 285
               +I E F      +       GLGL I   LV+ +SG +    E
Sbjct: 645 QDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSE 691

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>DCTB_RHIME (P13633) C4-dicarboxylate transport sensor protein dctB (EC|
           2.7.13.3)
          Length = 621

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
 Frame = -3

Query: 584 GDNLRLQQVLADYLACTLQFTRPAEGPIVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVP 405
           G+ +RL+QVL + L   L+    +E   + QV  + E    G+ +      V    PG+ 
Sbjct: 515 GNRIRLEQVLINLLQNALEAIGDSEDGAI-QV--RCEEAAGGIALT-----VADNGPGIA 566

Query: 404 EALIQEMFRHGPGVSRE---GLGLHISQKLVKTMSGTVQYLREAESSSFIV 261
             + +E+F      S+E   GLGL IS+++V    GT++       ++F V
Sbjct: 567 ADVREELFTPF-NTSKEDGLGLGLAISKEIVSDYGGTIEVESGPSGTTFAV 616

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>CUSS_ECOL6 (Q8FK37) Sensor kinase cusS (EC 2.7.13.3)|
          Length = 480

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 10/120 (8%)
 Frame = -3

Query: 584 GDNLRLQQVLADYLACTLQFTRPAEGPIVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVP 405
           GD L L++ L++ L+  L++T   E  +V               + HL  +V    PG P
Sbjct: 371 GDPLMLRRALSNLLSNALRYTPTGETIVV-----------RCQTVDHL-VQVTVENPGTP 418

Query: 404 EA------LIQEMFRHGPGVSREG----LGLHISQKLVKTMSGTVQYLREAESSSFIVLV 255
            A      L    +R  P   R+G    +GL I + +V    GTV    +   + F++++
Sbjct: 419 IAPEHLPRLFDRFYRVDPSRQRKGEGSGIGLAIVKSIVVAHKGTVAVTSDVRGTRFVIIL 478

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>PGTB_SALTY (P37433) Phosphoglycerate transport system sensor protein pgtB (EC|
           2.7.13.3)
          Length = 668

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 4/144 (2%)
 Frame = -3

Query: 650 SKEKQISLDRDWPVEVSSMYLYGDNLRLQQVLADYLACTLQFTRPAEGPIVLQVIPKKEH 471
           S++  +SL  D      ++++ GD +R+QQVL + LA  L          V+ V  +   
Sbjct: 541 SRQGALSLPTD------TVWVSGDEVRIQQVLVNVLANALD---ACSHDAVIAVTWQ--- 588

Query: 470 IGSGMQIAHLEFRVVHPAPGVPEALIQEMFRHGPGVSRE----GLGLHISQKLVKTMSGT 303
                Q   LE  +    PG P AL+  + +  P  + +    G+GL IS  L+  M G 
Sbjct: 589 ----TQGEALEVYIADNGPGWPVALLPSLLK--PFTTSKAVGLGIGLSISVSLMAQMKGD 642

Query: 302 VQYLREAESSSFIVLVEFPVAQLN 231
           ++ L    + +  V+++F V  ++
Sbjct: 643 LR-LASTLTRNACVVLQFSVTDVD 665

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>TMPSD_HUMAN (Q9BYE2) Transmembrane protease, serine 13 (EC 3.4.21.-) (Mosaic|
           serine protease) (Membrane-type mosaic serine protease)
          Length = 581

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +2

Query: 242 PPGTPPER*TRSSLLPGGTVPCRSSSSRAS 331
           P GTPP R + +   P GT P R+S  RAS
Sbjct: 46  PAGTPPGRASPAQASPAGTPPGRASPGRAS 75

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>MAK1_SCHPO (Q9P7Q7) Peroxide stress-activated histidine kinase mak1 (EC|
            2.7.13.3) (Mcs4-associated kinase 1) (His-Asp
            phosphorelay kinase phk3)
          Length = 1639

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 12/131 (9%)
 Frame = -3

Query: 656  SLSKEKQISLDRDWPVEVSSMYLYGDNLRLQQVLADYLACTLQFTRPAEGPIVLQVIPKK 477
            +L+  K I L+    ++V  + ++GDN+R++QV  + +   ++FT   E      V    
Sbjct: 1082 TLAFSKGIELNYTVDIDVPDI-VFGDNMRMRQVALNVIGNAIKFTNVGEVFTRCSV---- 1136

Query: 476  EHIGSGMQIAHLEFRVVHPAPGVPEALIQEMF------------RHGPGVSREGLGLHIS 333
            E I        L++  +    G       +MF            RHG      GLGL IS
Sbjct: 1137 EKIDYSTNTVVLKWECIDTGQGFNRDDQLQMFKPFSQVESSTLPRHG----GSGLGLVIS 1192

Query: 332  QKLVKTMSGTV 300
            ++LV+  +G++
Sbjct: 1193 KELVELHNGSM 1203

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>SYV_BACSK (Q5WEQ4) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 880

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
 Frame = -3

Query: 620 DWPVEVSSMYLYGDNLRLQQ----VLADYLACTLQFTRPAEGPIVLQVIPKKEHIGSGMQ 453
           DW +E++ + LYG+N + +Q    VLA  L  T++   P    I  ++     H G  + 
Sbjct: 648 DWYIEMAKLALYGENEQAKQATRSVLAHVLDQTMRMLHPFMPFITEEIWQHLPHEGESIT 707

Query: 452 IAH 444
           +A+
Sbjct: 708 VAN 710

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>RPOC2_LOTJA (Q9BBS7) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)|
            (Plastid-encoded RNA polymerase beta'' subunit) (RNA
            polymerase beta'' subunit)
          Length = 1332

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +2

Query: 560  LAEALSYPHIGTLMILLLANHDQEKFVFPCSETCLALGPYS 682
            + ++LS  H GT+ +LL  N +   F+   S  C  +GP++
Sbjct: 889  IQQSLSQKH-GTIRMLLNRNKENRSFIILSSSNCFQMGPFN 928

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>RESE_BACSU (P35164) Sensor protein resE (EC 2.7.13.3)|
          Length = 589

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 30/136 (22%), Positives = 60/136 (44%), Gaps = 8/136 (5%)
 Frame = -3

Query: 683 LNTVLMQGMSLSKEKQISLDRDWPVEVSSMYLYGDNLRLQQVLADYLACTLQFTRPAEGP 504
           L  ++ +   ++KEK I+LD D  + ++      D  +++QV  + +   L+ T  A G 
Sbjct: 446 LEKIIRKFSGVAKEKNIALDHD--ISLTEEEFMFDEDKMEQVFTNLIDNALRHT-SAGGS 502

Query: 503 IVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFR--------HGPGVSREGL 348
           + + V   K+          L+  +     G+PE  +  +F            G +  GL
Sbjct: 503 VSISVHSVKD---------GLKIDIKDSGSGIPEEDLPFIFERFYKADKARTRGRAGTGL 553

Query: 347 GLHISQKLVKTMSGTV 300
           GL I + +V+  +G++
Sbjct: 554 GLAIVKNIVEAHNGSI 569

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>EVGS_ECOLI (P30855) Sensor protein evgS precursor (EC 2.7.13.3)|
          Length = 1197

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 6/98 (6%)
 Frame = -3

Query: 581  DNLRLQQVLADYLACTLQFTRPAEGPIVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPE 402
            D    +QVL++ L+  L+FT   EG +  ++     HI     +  ++  ++    G+ +
Sbjct: 825  DPQAFKQVLSNLLSNALKFT--TEGAV--KITTSLGHIDDNHAV--IKMTIMDSGSGLSQ 878

Query: 401  ALIQEMFRH------GPGVSREGLGLHISQKLVKTMSG 306
               Q++F+       G   +  GLGL I ++L+K M G
Sbjct: 879  EEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQG 916

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>EVGS_ECO57 (P58402) Sensor protein evgS precursor (EC 2.7.13.3)|
          Length = 1197

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
 Frame = -3

Query: 581  DNLRLQQVLADYLACTLQFTRPAEGPIVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPE 402
            D    +QVL++ L+  L+FT      I   ++    HI     +  ++  ++    G+ +
Sbjct: 825  DPQAFKQVLSNLLSNALKFTTEGAVKITTSLV----HIDDNHAV--IKMTIMDSGSGLSQ 878

Query: 401  ALIQEMFRH------GPGVSREGLGLHISQKLVKTMSG 306
               Q++F+       G   +  GLGL I ++L+K M G
Sbjct: 879  EEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQG 916

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>NTRB_BRASR (P10578) Nitrogen regulation protein ntrB (EC 2.7.13.3)|
          Length = 377

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
 Frame = -3

Query: 533 LQFTRPAEGPIVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFRHGPGVSRE 354
           +Q T      + L V  KK  +        LEF V     GVPE L+  +F   P V+ +
Sbjct: 273 IQLTTAFRPGVRLSVPGKKSRVS-----LPLEFCVKDNGSGVPEDLLPNLF--DPFVTTK 325

Query: 353 ----GLGLHISQKLVKTMSGTVQYLREAESSSFIVL 258
               GLGL +  K+V    G ++   +   ++F VL
Sbjct: 326 QTGSGLGLALVAKIVGDHGGIIECESQPRKTTFRVL 361

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>LEFTB_MOUSE (P57785) Left-right determination factor B precursor (Lefty-2|
           protein)
          Length = 368

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = -3

Query: 530 QFTRPAEGPIVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPE 402
           Q +RP + P++LQV  ++EH+G G   AH   R    A G P+
Sbjct: 189 QLSRPRQ-PLLLQVSVQREHLGPGTWSAHKLVRFA--AQGTPD 228


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,889,323
Number of Sequences: 219361
Number of extensions: 2063630
Number of successful extensions: 5895
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 5665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5851
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6769072002
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result