ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaak39e02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_549806.1| Oryza sativa (japonica cultivar-group), mRNA 297 2e-77
2gb|AY972084.1| Oryza sativa (japonica cultivar-group) sphingosin... 297 2e-77
3gb|AY106741.1| Zea mays PCO149699 mRNA sequence 190 3e-45
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 155 2e-34
5dbj|AP003727.3| Oryza sativa (japonica cultivar-group) genomic D... 155 2e-34
6dbj|AP003610.2| Oryza sativa (japonica cultivar-group) genomic D... 155 2e-34
7ref|NM_102563.2| Arabidopsis thaliana carboxy-lyase AT1G27980 mR... 48 0.032
8gb|AY113914.1| Arabidopsis thaliana putative sphingosine-1-phosp... 48 0.032
9gb|AF360166.1| Arabidopsis thaliana putative sphingosine-1-phosp... 48 0.032
10emb|BX814065.1|CNS0AEBE Arabidopsis thaliana Full-length cDNA Co... 48 0.032
11gb|AC069471.4|AC069471 Arabidopsis thaliana chromosome 1 BAC F13... 48 0.032
12gb|AY085442.1| Arabidopsis thaliana clone 1518 mRNA, complete se... 48 0.032
13dbj|AB175035.1| Arabidopsis thaliana AtSPL1 mRNA for sphingosine... 48 0.032
14ref|XM_384589.1| Gibberella zeae PH-1 chromosome 2 hypothetical ... 44 0.50
15emb|BX005167.12| Mouse DNA sequence from clone RP23-247K19 on ch... 44 0.50
16emb|CR931763.8| Zebrafish DNA sequence from clone DKEY-65B12 in ... 42 2.0
17gb|AC011901.4| Homo sapiens BAC clone RP11-547P13 from 2, comple... 42 2.0
18gb|AC108442.6| Mus musculus chromosome 8, clone RP23-242M14, com... 40 7.8
19gb|AC138334.11| Mus musculus chromosome 7, clone RP23-306H5, com... 40 7.8
20gb|AC160140.2| Mus musculus BAC clone RP23-40C13 from chromosome... 40 7.8
21gb|AC139347.4| Mus musculus BAC clone RP24-334F11 from chromosom... 40 7.8
22gb|AC146143.2| Pan troglodytes BAC clone RP43-37I19 from 7, comp... 40 7.8
23gb|AC124541.4| Mus musculus BAC clone RP23-257F7 from 7, complet... 40 7.8
24gb|AC129021.4| Mus musculus BAC clone RP23-312H15 from 16, compl... 40 7.8
25emb|AL606500.8| Human DNA sequence from clone RP11-274N19 on chr... 40 7.8
26gb|AC093015.5| Homo sapiens 12q BAC RP11-534K23 (Roswell Park Ca... 40 7.8
27gb|AC090578.6| Homo sapiens chromosome 8, clone RP11-642C5, comp... 40 7.8
28dbj|AK156094.1| Mus musculus activated spleen cDNA, RIKEN full-l... 40 7.8
29dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.8
30gb|AC017053.8| Homo sapiens BAC clone RP11-339D8 from 2, complet... 40 7.8
31gb|AC009107.11| Homo sapiens chromosome 16 clone RP11-459F6, com... 40 7.8
32dbj|AP003573.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.8
33gb|AC147652.4| Pan troglodytes BAC clone RP43-136A3 from chromos... 40 7.8
34emb|CT010575.15| Mouse DNA sequence from clone RP23-217J21 on ch... 40 7.8
35gb|AC149605.7| Mus musculus BAC clone RP23-473E20 from 7, comple... 40 7.8
36gb|AC167659.7| Mus musculus chromosome 7, clone RP23-165I8, comp... 40 7.8 
>ref|XM_549806.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1686

 Score =  297 bits (150), Expect = 2e-77
 Identities = 327/386 (84%)
 Strand = Plus / Minus

                                                                        
Query: 189  gtccatgaactctacaagtaactccttgaccgtgcctctgtctggcatcttcccagccgc 248
            |||||||||||| || || | |||| ||||| |||||||||| |||||||| ||||| ||
Sbjct: 1674 gtccatgaactccaccagcagctccctgaccatgcctctgtccggcatcttgccagcagc 1615

                                                                        
Query: 249  gccgtagatcggagccatccccccgctgataggccctggattcgctttcacggtgtttac 308
             ||||| ||||||||   ||||||||| |||||||||||||| ||||| || ||||  ||
Sbjct: 1614 tccgtaaatcggagctcgccccccgctaataggccctggatttgcttttacagtgtccac 1555

                                                                        
Query: 309  agaatcctcgagatccttgaggaattcctcgtaaattgccgtgtgttgaagtgtcacgca 368
             ||||| |  |||||||| ||||||||||| || ||  ||||||| || |||||||| ||
Sbjct: 1554 tgaatctttcagatccttcaggaattcctcatatatgaccgtgtgctgcagtgtcacaca 1495

                                                                        
Query: 369  gatgtgcaaactgttgggtctctgaagagcattgaggtgccatccttttgatgacattat 428
             ||||| ||||||||||||||||| |||||||| |||||||| |||||||||||||||||
Sbjct: 1494 aatgtgtaaactgttgggtctctgcagagcattaaggtgccagccttttgatgacattat 1435

                                                                        
Query: 429  gtcattcacctcaaatatgtcgaccgcgtccgacccaaaggccacgacagtcatgtctgg 488
            ||| |||||||||||||| || ||||  || || ||||| ||||||||||||||||||||
Sbjct: 1434 gtcgttcacctcaaatatatcaaccgaatctgagccaaatgccacgacagtcatgtctgg 1375

                                                                        
Query: 489  tttcccaatcacaaataaacctgagatatcatcaattcctttttgtatcttctttgagac 548
             || ||||||||||| || |||| |||||| ||||| ||| ||||||| ||||| || ||
Sbjct: 1374 ctttccaatcacaaacaaccctgggatatcttcaatccctctttgtattttcttcgacac 1315

                                      
Query: 549  ttccatgatttgacccgtactttcca 574
            ||||||||| ||||| ||| ||||||
Sbjct: 1314 ttccatgatatgacctgtattttcca 1289
to top
>gb|AY972084.1| Oryza sativa (japonica cultivar-group) sphingosine-1-phosphate lyase
            (SPL) mRNA, complete cds
          Length = 1620

 Score =  297 bits (150), Expect = 2e-77
 Identities = 327/386 (84%)
 Strand = Plus / Minus

                                                                        
Query: 189  gtccatgaactctacaagtaactccttgaccgtgcctctgtctggcatcttcccagccgc 248
            |||||||||||| || || | |||| ||||| |||||||||| |||||||| ||||| ||
Sbjct: 1608 gtccatgaactccaccagcagctccctgaccatgcctctgtccggcatcttgccagcagc 1549

                                                                        
Query: 249  gccgtagatcggagccatccccccgctgataggccctggattcgctttcacggtgtttac 308
             ||||| ||||||||   ||||||||| |||||||||||||| ||||| || ||||  ||
Sbjct: 1548 tccgtaaatcggagctcgccccccgctaataggccctggatttgcttttacagtgtccac 1489

                                                                        
Query: 309  agaatcctcgagatccttgaggaattcctcgtaaattgccgtgtgttgaagtgtcacgca 368
             ||||| |  |||||||| ||||||||||| || ||  ||||||| || |||||||| ||
Sbjct: 1488 tgaatctttcagatccttcaggaattcctcatatatgaccgtgtgctgcagtgtcacaca 1429

                                                                        
Query: 369  gatgtgcaaactgttgggtctctgaagagcattgaggtgccatccttttgatgacattat 428
             ||||| ||||||||||||||||| |||||||| |||||||| |||||||||||||||||
Sbjct: 1428 aatgtgtaaactgttgggtctctgcagagcattaaggtgccagccttttgatgacattat 1369

                                                                        
Query: 429  gtcattcacctcaaatatgtcgaccgcgtccgacccaaaggccacgacagtcatgtctgg 488
            ||| |||||||||||||| || ||||  || || ||||| ||||||||||||||||||||
Sbjct: 1368 gtcgttcacctcaaatatatcaaccgaatctgagccaaatgccacgacagtcatgtctgg 1309

                                                                        
Query: 489  tttcccaatcacaaataaacctgagatatcatcaattcctttttgtatcttctttgagac 548
             || ||||||||||| || |||| |||||| ||||| ||| ||||||| ||||| || ||
Sbjct: 1308 ctttccaatcacaaacaaccctgggatatcttcaatccctctttgtattttcttcgacac 1249

                                      
Query: 549  ttccatgatttgacccgtactttcca 574
            ||||||||| ||||| ||| ||||||
Sbjct: 1248 ttccatgatatgacctgtattttcca 1223
to top
>gb|AY106741.1| Zea mays PCO149699 mRNA sequence
          Length = 329

 Score =  190 bits (96), Expect = 3e-45
 Identities = 252/304 (82%)
 Strand = Plus / Minus

                                                                       
Query: 254 agatcggagccatccccccgctgataggccctggattcgctttcacggtgtttacagaat 313
           |||| |||||| | || ||||| || || ||||| || |||||||| ||||| ||||| |
Sbjct: 329 agataggagcctttccgccgctaatcgggcctgggtttgctttcacagtgttgacagagt 270

                                                                       
Query: 314 cctcgagatccttgaggaattcctcgtaaattgccgtgtgttgaagtgtcacgcagatgt 373
           | |  |||||||| |||||||  |||||||  | |||||||||||| ||||| ||||| |
Sbjct: 269 cttgcagatccttcaggaattggtcgtaaacagtcgtgtgttgaagggtcacacagatat 210

                                                                       
Query: 374 gcaaactgttgggtctctgaagagcattgaggtgccatccttttgatgacattatgtcat 433
           |||| ||||| |||||||| ||||||||||| ||||| |||||||||||||||||||| |
Sbjct: 209 gcaagctgttaggtctctgcagagcattgagatgccaaccttttgatgacattatgtcgt 150

                                                                       
Query: 434 tcacctcaaatatgtcgaccgcgtccgacccaaaggccacgacagtcatgtctggtttcc 493
           |||||||||||||||||||  |||| || || || ||||| || ||||| || |||||||
Sbjct: 149 tcacctcaaatatgtcgacaacgtctgagccgaacgccacaacggtcatatccggtttcc 90

                                                                       
Query: 494 caatcacaaataaacctgagatatcatcaattcctttttgtatcttctttgagacttcca 553
           | |||||||| || |||| ||| ||  |||| ||| ||||||| |||||||| || ||||
Sbjct: 89  ctatcacaaacaaccctgggatctctccaatccctctttgtattttctttgaaacatcca 30

               
Query: 554 tgat 557
           ||||
Sbjct: 29  tgat 26
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             complete sequence
          Length = 43261740

 Score =  155 bits (78), Expect = 2e-34
 Identities = 129/146 (88%)
 Strand = Plus / Minus

                                                                         
Query: 379   ctgttgggtctctgaagagcattgaggtgccatccttttgatgacattatgtcattcacc 438
             |||||||||||||| |||||||| |||||||| |||||||||||||||||||| ||||||
Sbjct: 39602 ctgttgggtctctgcagagcattaaggtgccagccttttgatgacattatgtcgttcacc 39543

                                                                         
Query: 439   tcaaatatgtcgaccgcgtccgacccaaaggccacgacagtcatgtctggtttcccaatc 498
             |||||||| || ||||  || || ||||| |||||||||||||||||||| || ||||||
Sbjct: 39542 tcaaatatatcaaccgaatctgagccaaatgccacgacagtcatgtctggctttccaatc 39483

                                       
Query: 499   acaaataaacctgagatatcatcaat 524
             ||||| || |||| |||||| |||||
Sbjct: 39482 acaaacaaccctgggatatcttcaat 39457



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 92/108 (85%)
 Strand = Plus / Minus

                                                                         
Query: 189   gtccatgaactctacaagtaactccttgaccgtgcctctgtctggcatcttcccagccgc 248
             |||||||||||| || || | |||| ||||| |||||||||| |||||||| ||||| ||
Sbjct: 39995 gtccatgaactccaccagcagctccctgaccatgcctctgtccggcatcttgccagcagc 39936

                                                             
Query: 249   gccgtagatcggagccatccccccgctgataggccctggattcgcttt 296
              ||||| ||||||||   ||||||||| |||||||||||||| |||||
Sbjct: 39935 tccgtaaatcggagctcgccccccgctaataggccctggatttgcttt 39888



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                         
Query: 319   agatccttgaggaattcctcgtaaattgccgtgtgttgaagtgtcacgcagatgtgcaaa 378
             |||||||| ||||||||||| || ||  ||||||| || |||||||| || ||||| |||
Sbjct: 39762 agatccttcaggaattcctcatatatgaccgtgtgctgcagtgtcacacaaatgtgtaaa 39703

                
Query: 379   ctg 381
             |||
Sbjct: 39702 ctg 39700



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                          
Query: 530   tttgtatcttctttgagacttccatgatttgacccgtactttcca 574
             ||||||| ||||| || ||||||||||| ||||| ||| ||||||
Sbjct: 39185 tttgtattttcttcgacacttccatgatatgacctgtattttcca 39141
to top
>dbj|AP003727.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0672D08
          Length = 173729

 Score =  155 bits (78), Expect = 2e-34
 Identities = 129/146 (88%)
 Strand = Plus / Minus

                                                                         
Query: 379   ctgttgggtctctgaagagcattgaggtgccatccttttgatgacattatgtcattcacc 438
             |||||||||||||| |||||||| |||||||| |||||||||||||||||||| ||||||
Sbjct: 37404 ctgttgggtctctgcagagcattaaggtgccagccttttgatgacattatgtcgttcacc 37345

                                                                         
Query: 439   tcaaatatgtcgaccgcgtccgacccaaaggccacgacagtcatgtctggtttcccaatc 498
             |||||||| || ||||  || || ||||| |||||||||||||||||||| || ||||||
Sbjct: 37344 tcaaatatatcaaccgaatctgagccaaatgccacgacagtcatgtctggctttccaatc 37285

                                       
Query: 499   acaaataaacctgagatatcatcaat 524
             ||||| || |||| |||||| |||||
Sbjct: 37284 acaaacaaccctgggatatcttcaat 37259



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 92/108 (85%)
 Strand = Plus / Minus

                                                                         
Query: 189   gtccatgaactctacaagtaactccttgaccgtgcctctgtctggcatcttcccagccgc 248
             |||||||||||| || || | |||| ||||| |||||||||| |||||||| ||||| ||
Sbjct: 37797 gtccatgaactccaccagcagctccctgaccatgcctctgtccggcatcttgccagcagc 37738

                                                             
Query: 249   gccgtagatcggagccatccccccgctgataggccctggattcgcttt 296
              ||||| ||||||||   ||||||||| |||||||||||||| |||||
Sbjct: 37737 tccgtaaatcggagctcgccccccgctaataggccctggatttgcttt 37690



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                         
Query: 319   agatccttgaggaattcctcgtaaattgccgtgtgttgaagtgtcacgcagatgtgcaaa 378
             |||||||| ||||||||||| || ||  ||||||| || |||||||| || ||||| |||
Sbjct: 37564 agatccttcaggaattcctcatatatgaccgtgtgctgcagtgtcacacaaatgtgtaaa 37505

                
Query: 379   ctg 381
             |||
Sbjct: 37504 ctg 37502



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                          
Query: 530   tttgtatcttctttgagacttccatgatttgacccgtactttcca 574
             ||||||| ||||| || ||||||||||| ||||| ||| ||||||
Sbjct: 36987 tttgtattttcttcgacacttccatgatatgacctgtattttcca 36943
to top
>dbj|AP003610.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0402A09
          Length = 141966

 Score =  155 bits (78), Expect = 2e-34
 Identities = 129/146 (88%)
 Strand = Plus / Minus

                                                                         
Query: 379   ctgttgggtctctgaagagcattgaggtgccatccttttgatgacattatgtcattcacc 438
             |||||||||||||| |||||||| |||||||| |||||||||||||||||||| ||||||
Sbjct: 24532 ctgttgggtctctgcagagcattaaggtgccagccttttgatgacattatgtcgttcacc 24473

                                                                         
Query: 439   tcaaatatgtcgaccgcgtccgacccaaaggccacgacagtcatgtctggtttcccaatc 498
             |||||||| || ||||  || || ||||| |||||||||||||||||||| || ||||||
Sbjct: 24472 tcaaatatatcaaccgaatctgagccaaatgccacgacagtcatgtctggctttccaatc 24413

                                       
Query: 499   acaaataaacctgagatatcatcaat 524
             ||||| || |||| |||||| |||||
Sbjct: 24412 acaaacaaccctgggatatcttcaat 24387



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 92/108 (85%)
 Strand = Plus / Minus

                                                                         
Query: 189   gtccatgaactctacaagtaactccttgaccgtgcctctgtctggcatcttcccagccgc 248
             |||||||||||| || || | |||| ||||| |||||||||| |||||||| ||||| ||
Sbjct: 24925 gtccatgaactccaccagcagctccctgaccatgcctctgtccggcatcttgccagcagc 24866

                                                             
Query: 249   gccgtagatcggagccatccccccgctgataggccctggattcgcttt 296
              ||||| ||||||||   ||||||||| |||||||||||||| |||||
Sbjct: 24865 tccgtaaatcggagctcgccccccgctaataggccctggatttgcttt 24818



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                         
Query: 319   agatccttgaggaattcctcgtaaattgccgtgtgttgaagtgtcacgcagatgtgcaaa 378
             |||||||| ||||||||||| || ||  ||||||| || |||||||| || ||||| |||
Sbjct: 24692 agatccttcaggaattcctcatatatgaccgtgtgctgcagtgtcacacaaatgtgtaaa 24633

                
Query: 379   ctg 381
             |||
Sbjct: 24632 ctg 24630



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                          
Query: 530   tttgtatcttctttgagacttccatgatttgacccgtactttcca 574
             ||||||| ||||| || ||||||||||| ||||| ||| ||||||
Sbjct: 24115 tttgtattttcttcgacacttccatgatatgacctgtattttcca 24071
to top
>ref|NM_102563.2| Arabidopsis thaliana carboxy-lyase AT1G27980 mRNA, complete cds
          Length = 2082

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                        
Query: 379  ctgttgggtctctgaagagcattgaggtgccatccttttgatgacattatgtcattcacc 438
            |||||||||||||| || ||||| |  ||||| ||||| || ||||| |||||||| || 
Sbjct: 1490 ctgttgggtctctgtagtgcattcaaatgccaacctttagaagacatgatgtcattaact 1431

                    
Query: 439  tcaaatat 446
            ||||||||
Sbjct: 1430 tcaaatat 1423
to top
>gb|AY113914.1| Arabidopsis thaliana putative sphingosine-1-phosphate lyase
            (At1g27980) mRNA, complete cds
          Length = 1666

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                        
Query: 379  ctgttgggtctctgaagagcattgaggtgccatccttttgatgacattatgtcattcacc 438
            |||||||||||||| || ||||| |  ||||| ||||| || ||||| |||||||| || 
Sbjct: 1433 ctgttgggtctctgtagtgcattcaaatgccaacctttagaagacatgatgtcattaact 1374

                    
Query: 439  tcaaatat 446
            ||||||||
Sbjct: 1373 tcaaatat 1366
to top
>gb|AF360166.1| Arabidopsis thaliana putative sphingosine-1-phosphate lyase
            (At1g27980) mRNA, complete cds
          Length = 1836

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                        
Query: 379  ctgttgggtctctgaagagcattgaggtgccatccttttgatgacattatgtcattcacc 438
            |||||||||||||| || ||||| |  ||||| ||||| || ||||| |||||||| || 
Sbjct: 1492 ctgttgggtctctgtagtgcattcaaatgccaacctttagaagacatgatgtcattaact 1433

                    
Query: 439  tcaaatat 446
            ||||||||
Sbjct: 1432 tcaaatat 1425
to top
>emb|BX814065.1|CNS0AEBE Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB55ZB02 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1748

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                        
Query: 379  ctgttgggtctctgaagagcattgaggtgccatccttttgatgacattatgtcattcacc 438
            |||||||||||||| || ||||| |  ||||| ||||| || ||||| |||||||| || 
Sbjct: 1459 ctgttgggtctctgtagtgcattcaaatgccaacctttagaagacatgatgtcattaact 1400

                    
Query: 439  tcaaatat 446
            ||||||||
Sbjct: 1399 tcaaatat 1392
to top
>gb|AC069471.4|AC069471 Arabidopsis thaliana chromosome 1 BAC F13K9 genomic sequence, complete
             sequence
          Length = 126991

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                         
Query: 379   ctgttgggtctctgaagagcattgaggtgccatccttttgatgacattatgtcattcacc 438
             |||||||||||||| || ||||| |  ||||| ||||| || ||||| |||||||| || 
Sbjct: 38535 ctgttgggtctctgtagtgcattcaaatgccaacctttagaagacatgatgtcattaact 38476

                     
Query: 439   tcaaatat 446
             ||||||||
Sbjct: 38475 tcaaatat 38468
to top
>gb|AY085442.1| Arabidopsis thaliana clone 1518 mRNA, complete sequence
          Length = 531

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                       
Query: 379 ctgttgggtctctgaagagcattgaggtgccatccttttgatgacattatgtcattcacc 438
           |||||||||||||| || ||||| |  ||||| ||||| || ||||| |||||||| || 
Sbjct: 202 ctgttgggtctctgtagtgcattcaaatgccaacctttagaagacatgatgtcattaact 143

                   
Query: 439 tcaaatat 446
           ||||||||
Sbjct: 142 tcaaatat 135
to top
>dbj|AB175035.1| Arabidopsis thaliana AtSPL1 mRNA for sphingosine-1-phosphate lyase,
            complete cds
          Length = 1635

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                        
Query: 379  ctgttgggtctctgaagagcattgaggtgccatccttttgatgacattatgtcattcacc 438
            |||||||||||||| || ||||| |  ||||| ||||| || ||||| |||||||| || 
Sbjct: 1433 ctgttgggtctctgtagtgcattcaaatgccaacctttagaagacatgatgtcattaact 1374

                    
Query: 439  tcaaatat 446
            ||||||||
Sbjct: 1373 tcaaatat 1366
to top
>ref|XM_384589.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG04413.1)
            partial mRNA
          Length = 1719

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 388  ctctgaagagcattgaggtgccatcc 413
            ||||||||||| ||||||||||||||
Sbjct: 1469 ctctgaagagcgttgaggtgccatcc 1444
to top
>emb|BX005167.12| Mouse DNA sequence from clone RP23-247K19 on chromosome X, complete
              sequence
          Length = 212046

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 419    atgacattatgtcattcacctc 440
              ||||||||||||||||||||||
Sbjct: 166299 atgacattatgtcattcacctc 166320
to top
>emb|CR931763.8| Zebrafish DNA sequence from clone DKEY-65B12 in linkage group 5,
            complete sequence
          Length = 186739

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 414  ttttgatgacattatgtcatt 434
            |||||||||||||||||||||
Sbjct: 6274 ttttgatgacattatgtcatt 6294
to top
>gb|AC011901.4| Homo sapiens BAC clone RP11-547P13 from 2, complete sequence
          Length = 201567

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 2      gctgaaatgtaactttattga 22
              |||||||||||||||||||||
Sbjct: 138143 gctgaaatgtaactttattga 138123
to top
>gb|AC108442.6| Mus musculus chromosome 8, clone RP23-242M14, complete sequence
          Length = 209618

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 144   acagagagataaccaatggg 163
             ||||||||||||||||||||
Sbjct: 51873 acagagagataaccaatggg 51854
to top
>gb|AC138334.11| Mus musculus chromosome 7, clone RP23-306H5, complete sequence
          Length = 177803

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 307    acagaatcctcgagatccttgagg 330
              ||||||||||| ||||||||||||
Sbjct: 176197 acagaatcctcaagatccttgagg 176220
to top
>gb|AC160140.2| Mus musculus BAC clone RP23-40C13 from chromosome 13, complete sequence
          Length = 118653

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 483   gtctggtttcccaatcacaaataaacct 510
             ||||||||||||| ||||||| ||||||
Sbjct: 47753 gtctggtttcccactcacaaacaaacct 47780
to top
>gb|AC139347.4| Mus musculus BAC clone RP24-334F11 from chromosome 16, complete
            sequence
          Length = 193398

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 529  ttttgtatcttctttgagac 548
            ||||||||||||||||||||
Sbjct: 4717 ttttgtatcttctttgagac 4736
to top
>gb|AC146143.2| Pan troglodytes BAC clone RP43-37I19 from 7, complete sequence
          Length = 188333

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 315   ctcgagatccttgaggaatt 334
             ||||||||||||||||||||
Sbjct: 48216 ctcgagatccttgaggaatt 48197
to top
>gb|AC124541.4| Mus musculus BAC clone RP23-257F7 from 7, complete sequence
          Length = 145556

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 127   ggttgtacatacatggtaca 146
             ||||||||||||||||||||
Sbjct: 79662 ggttgtacatacatggtaca 79681
to top
>gb|AC129021.4| Mus musculus BAC clone RP23-312H15 from 16, complete sequence
          Length = 184961

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 529    ttttgtatcttctttgagac 548
              ||||||||||||||||||||
Sbjct: 163643 ttttgtatcttctttgagac 163662
to top
>emb|AL606500.8| Human DNA sequence from clone RP11-274N19 on chromosome 1 Contains the
             3' end of the KCNN3 gene for potassium intermediate/small
             conductance calcium-activated channel, subfamily N, member
             3, a novel gene and the 5' end of the ADAR gene for
             adenosine deaminase, RNA-specific, complete sequence
          Length = 173014

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 422   acattatgtcattcacctcaaatatgtc 449
             |||| ||||||||||||||||| |||||
Sbjct: 83430 acatcatgtcattcacctcaaagatgtc 83403
to top
>gb|AC093015.5| Homo sapiens 12q BAC RP11-534K23 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 115294

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     ggctgaaatgtaactttatt 20
             ||||||||||||||||||||
Sbjct: 51955 ggctgaaatgtaactttatt 51974
to top
>gb|AC090578.6| Homo sapiens chromosome 8, clone RP11-642C5, complete sequence
          Length = 187209

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 413    cttttgatgacattatgtca 432
              ||||||||||||||||||||
Sbjct: 178352 cttttgatgacattatgtca 178333
to top
>dbj|AK156094.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched
            library, clone:F830007M13 product:unclassifiable, full
            insert sequence
          Length = 3597

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 529  ttttgtatcttctttgagac 548
            ||||||||||||||||||||
Sbjct: 1689 ttttgtatcttctttgagac 1670
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 514      atatcatcaattcctttttg 533
                ||||||||||||||||||||
Sbjct: 25505487 atatcatcaattcctttttg 25505506
to top
>gb|AC017053.8| Homo sapiens BAC clone RP11-339D8 from 2, complete sequence
          Length = 181952

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 501   aaataaacctgagatatcat 520
             ||||||||||||||||||||
Sbjct: 54021 aaataaacctgagatatcat 54040
to top
>gb|AC009107.11| Homo sapiens chromosome 16 clone RP11-459F6, complete sequence
          Length = 208220

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 276    gataggccctggattcgctt 295
              ||||||||||||||||||||
Sbjct: 125875 gataggccctggattcgctt 125856
to top
>dbj|AP003573.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0523F01
          Length = 146419

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 514   atatcatcaattcctttttg 533
             ||||||||||||||||||||
Sbjct: 23804 atatcatcaattcctttttg 23823
to top
>gb|AC147652.4| Pan troglodytes BAC clone RP43-136A3 from chromosome 7, complete
             sequence
          Length = 196621

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 315   ctcgagatccttgaggaatt 334
             ||||||||||||||||||||
Sbjct: 73352 ctcgagatccttgaggaatt 73333
to top
>emb|CT010575.15| Mouse DNA sequence from clone RP23-217J21 on chromosome 13, complete
              sequence
          Length = 201791

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 483    gtctggtttcccaatcacaaataaacct 510
              ||||||||||||| ||||||| ||||||
Sbjct: 189120 gtctggtttcccactcacaaacaaacct 189147
to top
>gb|AC149605.7| Mus musculus BAC clone RP23-473E20 from 7, complete sequence
          Length = 195585

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 127    ggttgtacatacatggtaca 146
              ||||||||||||||||||||
Sbjct: 132640 ggttgtacatacatggtaca 132621
to top
>gb|AC167659.7| Mus musculus chromosome 7, clone RP23-165I8, complete sequence
          Length = 248723

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 307   acagaatcctcgagatccttgagg 330
             ||||||||||| ||||||||||||
Sbjct: 34255 acagaatcctcaagatccttgagg 34278


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,863,148
Number of Sequences: 3902068
Number of extensions: 4863148
Number of successful extensions: 103893
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103771
Number of HSP's gapped (non-prelim): 122
length of query: 576
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 553
effective length of database: 17,143,297,704
effective search space: 9480243630312
effective search space used: 9480243630312
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top