ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal26g22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GUN1_ACICE (P54583) Endoglucanase E1 precursor (EC 3.2.1.4) (End... 31 3.7
2PLEC1_RAT (P30427) Plectin-1 (PLTN) (PCN) 30 8.2
3SLOU_DROME (P22807) Homeobox protein slou (S59/2) (Protein slouc... 30 8.2
4S27A5_MOUSE (Q4LDG0) Bile acyl-CoA synthetase (EC 6.2.1.7) (BACS... 30 8.2

>GUN1_ACICE (P54583) Endoglucanase E1 precursor (EC 3.2.1.4)|
           (Endo-1,4-beta-glucanase E1) (Cellulase E1)
           (Endocellulase E1)
          Length = 562

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -3

Query: 576 NSFGLKASVAESLTLAMKPWKFEQSVHGN-TATLNWFLHDGMNGREVCASKPSKLSLLQP 400
           N F +  +V  S ++A K W    +  GN T T +W      NG+ V A   S  +++QP
Sbjct: 477 NGFTVTVAVTNSGSVATKTWTVSWTFGGNQTITNSWNAAVTQNGQSVTARNMSYNNVIQP 536



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>PLEC1_RAT (P30427) Plectin-1 (PLTN) (PCN)|
          Length = 4687

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = -2

Query: 505  VCARKHCNLELVSARRHERKGGLCFKAFQAFAASAE----GLVPRQVLE 371
            +   K   + +     HERKG LCF+  +A   +AE    G++  +V +
Sbjct: 3090 ITVEKIIKIVITVVEEHERKGQLCFEGLRALVPAAELLDSGVISHEVYQ 3138



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>SLOU_DROME (P22807) Homeobox protein slou (S59/2) (Protein slouch) (Homeobox|
           protein NK-1)
          Length = 659

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +2

Query: 545 SATEALRPNEFGGSNEPSMPFSRPNSW 625
           S    L PN+F G+  PS PF  P  W
Sbjct: 448 SVENILDPNKFTGNKLPSGPFGHPRQW 474



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>S27A5_MOUSE (Q4LDG0) Bile acyl-CoA synthetase (EC 6.2.1.7) (BACS) (Bile acid|
           CoA ligase) (BA-CoA ligase) (BAL) (Cholate--CoA ligase)
           (Very long chain acyl-CoA synthetase-related protein)
           (VLACS-related) (VLACSR) (Fatty acid transport protein
           5) (FATP-5)
          Length = 689

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = -3

Query: 567 GLKASVAESLTLAMKP---WKFEQSVHGNTATLNWFLHDGMNGREVC 436
           GL+A+V ++      P   W+F  S  GN   +N+  H G  GR  C
Sbjct: 409 GLRANVWKNFQQRFGPIRIWEFYGSTEGNVGLMNYVGHCGAVGRTSC 455


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,619,690
Number of Sequences: 219361
Number of extensions: 2046588
Number of successful extensions: 5287
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5286
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6200242422
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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