ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal7p23 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC132491.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0599F04, complete sequence Length = 169073 Score = 159 bits (80), Expect = 1e-35 Identities = 125/140 (89%) Strand = Plus / Minus Query: 321 tctgccatctccttgaggaaggagacgacgtcctccgacgagttgagcaggtaacgggcg 380 ||||||||||||||||||||||||||||| ||||| |||||||| |||||||| |||||| Sbjct: 37593 tctgccatctccttgaggaaggagacgacctcctctgacgagttaagcaggtagcgggcg 37534 Query: 381 ttggagcgcttcctaccgacggcacaggagaagtagttgtcgccgttgaggtccagcacc 440 ||||| |||||||| || || || |||||||| || || ||||| |||||||| || ||| Sbjct: 37533 ttggaccgcttccttccaacagcgcaggagaaataattctcgcccttgaggtcaaggacc 37474 Query: 441 gaggacccttcgcgccagtc 460 |||||||||||||||||||| Sbjct: 37473 gaggacccttcgcgccagtc 37454 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 249 tactgcctatccaagaacatgtaatc 274 |||||||||||||||||||||||||| Sbjct: 37659 tactgcctatccaagaacatgtaatc 37634
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 159 bits (80), Expect = 1e-35 Identities = 125/140 (89%) Strand = Plus / Minus Query: 321 tctgccatctccttgaggaaggagacgacgtcctccgacgagttgagcaggtaacgggcg 380 ||||||||||||||||||||||||||||| ||||| |||||||| |||||||| |||||| Sbjct: 25521186 tctgccatctccttgaggaaggagacgacctcctctgacgagttaagcaggtagcgggcg 25521127 Query: 381 ttggagcgcttcctaccgacggcacaggagaagtagttgtcgccgttgaggtccagcacc 440 ||||| |||||||| || || || |||||||| || || ||||| |||||||| || ||| Sbjct: 25521126 ttggaccgcttccttccaacagcgcaggagaaataattctcgcccttgaggtcaaggacc 25521067 Query: 441 gaggacccttcgcgccagtc 460 |||||||||||||||||||| Sbjct: 25521066 gaggacccttcgcgccagtc 25521047 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 249 tactgcctatccaagaacatgtaatc 274 |||||||||||||||||||||||||| Sbjct: 25521252 tactgcctatccaagaacatgtaatc 25521227
>dbj|AK067066.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013093P17, full insert sequence Length = 2792 Score = 159 bits (80), Expect = 1e-35 Identities = 125/140 (89%) Strand = Plus / Minus Query: 321 tctgccatctccttgaggaaggagacgacgtcctccgacgagttgagcaggtaacgggcg 380 ||||||||||||||||||||||||||||| ||||| |||||||| |||||||| |||||| Sbjct: 2189 tctgccatctccttgaggaaggagacgacctcctctgacgagttaagcaggtagcgggcg 2130 Query: 381 ttggagcgcttcctaccgacggcacaggagaagtagttgtcgccgttgaggtccagcacc 440 ||||| |||||||| || || || |||||||| || || ||||| |||||||| || ||| Sbjct: 2129 ttggaccgcttccttccaacagcgcaggagaaataattctcgcccttgaggtcaaggacc 2070 Query: 441 gaggacccttcgcgccagtc 460 |||||||||||||||||||| Sbjct: 2069 gaggacccttcgcgccagtc 2050 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 249 tactgcctatccaagaacatgtaatc 274 |||||||||||||||||||||||||| Sbjct: 2255 tactgcctatccaagaacatgtaatc 2230
>gb|AY107344.1| Zea mays PCO141849 mRNA sequence Length = 700 Score = 153 bits (77), Expect = 8e-34 Identities = 125/141 (88%) Strand = Plus / Minus Query: 323 tgccatctccttgaggaaggagacgacgtcctccgacgagttgagcaggtaacgggcgtt 382 ||||| ||| ||||||||||||||||| ||||| ||||| | ||||||||||||||||| Sbjct: 582 tgccaactctttgaggaaggagacgacctcctctgacgaactcagcaggtaacgggcgtt 523 Query: 383 ggagcgcttcctaccgacggcacaggagaagtagttgtcgccgttgaggtccagcaccga 442 ||| |||||||| |||||||| |||||||||||||| ||| | ||||| || || ||||| Sbjct: 522 ggaccgcttccttccgacggcgcaggagaagtagttctcggccttgagatcgaggaccga 463 Query: 443 ggacccttcgcgccagtcgtg 463 ||||||||||||||||||||| Sbjct: 462 ggacccttcgcgccagtcgtg 442 Score = 60.0 bits (30), Expect = 9e-06 Identities = 30/30 (100%) Strand = Plus / Minus Query: 248 ttactgcctatccaagaacatgtaatcagc 277 |||||||||||||||||||||||||||||| Sbjct: 642 ttactgcctatccaagaacatgtaatcagc 613
>gb|AC018545.14| Homo sapiens 3 BAC RP11-145F16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 170359 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 516 ggcggtggctgcggcagcggcg 537 |||||||||||||||||||||| Sbjct: 100279 ggcggtggctgcggcagcggcg 100300
>gb|AC121794.3| Mus musculus BAC clone RP23-413C3 from chromosome 3, complete sequence Length = 195453 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 516 ggcggtggctgcggcagcggcg 537 |||||||||||||||||||||| Sbjct: 131048 ggcggtggctgcggcagcggcg 131027
>gb|BC036355.1| Homo sapiens TSC22 domain family, member 2, mRNA (cDNA clone IMAGE:5170441) Length = 1596 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 516 ggcggtggctgcggcagcggcg 537 |||||||||||||||||||||| Sbjct: 1411 ggcggtggctgcggcagcggcg 1390
>ref|XM_579989.1| PREDICTED: Rattus norvegicus LOC499623 (LOC499623), mRNA Length = 1420 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 516 ggcggtggctgcggcagcggcg 537 |||||||||||||||||||||| Sbjct: 1255 ggcggtggctgcggcagcggcg 1234
>ref|NM_192884.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2319 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 495 gacgacgaggatgacctctccggcg 519 |||||||||||||||| |||||||| Sbjct: 178 gacgacgaggatgaccactccggcg 202
>ref|NM_186183.1| Oryza sativa (japonica cultivar-group), mRNA Length = 279 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 495 gacgacgaggatgacctctccggcg 519 |||||||||||||||| |||||||| Sbjct: 29 gacgacgaggatgaccactccggcg 5
>gb|AC129162.5| Rattus norvegicus 9 BAC CH230-108L13 (Children's Hospital Oakland Research Institute) complete sequence Length = 245677 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 228 gtagagaaaagaaacttggcttact 252 |||||||||||||||| |||||||| Sbjct: 150400 gtagagaaaagaaactgggcttact 150376
>ref|NM_198423.2| Mus musculus BAH domain and coiled-coil containing 1 (Bahcc1), mRNA Length = 6178 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 517 gcggtggctgcggcagcggcg 537 ||||||||||||||||||||| Sbjct: 2247 gcggtggctgcggcagcggcg 2267
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 93 aattatactttgtacaggatt 113 ||||||||||||||||||||| Sbjct: 31135475 aattatactttgtacaggatt 31135455
>gb|AC084282.6| Oryza sativa chromosome 3 BAC OSJNBb0048A17 genomic sequence, complete sequence Length = 128017 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 93 aattatactttgtacaggatt 113 ||||||||||||||||||||| Sbjct: 56116 aattatactttgtacaggatt 56096
>dbj|AK147400.1| Mus musculus adult male brain UNDEFINED_CELL_LINE cDNA, RIKEN full-length enriched library, clone:M5C1031K16 product:hypothetical Bromo adjacent region containing protein, full insert sequence Length = 7597 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 517 gcggtggctgcggcagcggcg 537 ||||||||||||||||||||| Sbjct: 3717 gcggtggctgcggcagcggcg 3737
>dbj|AK147250.1| Mus musculus cDNA, RIKEN full-length enriched library, clone:M5C1002D21 product:B930044J06 protein (Fragment), full insert sequence Length = 10713 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 517 gcggtggctgcggcagcggcg 537 ||||||||||||||||||||| Sbjct: 6809 gcggtggctgcggcagcggcg 6829
>dbj|AK164229.1| Mus musculus 9 days embryo whole body cDNA, RIKEN full-length enriched library, clone:D030023H12 product:B930044J06 protein (Fragment), full insert sequence Length = 4916 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 517 gcggtggctgcggcagcggcg 537 ||||||||||||||||||||| Sbjct: 1050 gcggtggctgcggcagcggcg 1070
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 495 gacgacgaggatgacctctccggcg 519 |||||||||||||||| |||||||| Sbjct: 611531 gacgacgaggatgaccactccggcg 611507
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 93 aattatactttgtacaggatt 113 ||||||||||||||||||||| Sbjct: 31225998 aattatactttgtacaggatt 31225978
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 495 gacgacgaggatgacctctccggcg 519 |||||||||||||||| |||||||| Sbjct: 24975355 gacgacgaggatgaccactccggcg 24975331
>dbj|AP002744.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0006C01 Length = 153865 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 495 gacgacgaggatgacctctccggcg 519 |||||||||||||||| |||||||| Sbjct: 47878 gacgacgaggatgaccactccggcg 47854
>dbj|AP003746.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1123_C12 Length = 114309 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 495 gacgacgaggatgacctctccggcg 519 |||||||||||||||| |||||||| Sbjct: 46033 gacgacgaggatgaccactccggcg 46009
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 194 cttctccggtgggccgccgggccgg 218 ||||||||||| ||||||||||||| Sbjct: 4294497 cttctccggtgcgccgccgggccgg 4294521
>gb|BC072602.1| Mus musculus BAH domain and coiled-coil containing 1, mRNA (cDNA clone MGC:99902 IMAGE:6830770), complete cds Length = 6178 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 517 gcggtggctgcggcagcggcg 537 ||||||||||||||||||||| Sbjct: 2247 gcggtggctgcggcagcggcg 2267
>gb|BC060615.1| Mus musculus BAH domain and coiled-coil containing 1, mRNA (cDNA clone MGC:79150 IMAGE:6417635), complete cds Length = 5004 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 517 gcggtggctgcggcagcggcg 537 ||||||||||||||||||||| Sbjct: 1081 gcggtggctgcggcagcggcg 1101
>emb|AL928567.6| Mouse DNA sequence from clone RP23-296K20 on chromosome 11, complete sequence Length = 111073 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 517 gcggtggctgcggcagcggcg 537 ||||||||||||||||||||| Sbjct: 57921 gcggtggctgcggcagcggcg 57941
>gb|DQ215469.1| Taeniopygia guttata clone 0058P0016B07 high mobility group nucleosomal binding domain 3 isoform HMGN3a variant 1-like mRNA, complete sequence Length = 916 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 514 ccggcggtggctgcggcagcggcg 537 ||||||||||| |||||||||||| Sbjct: 128 ccggcggtggcggcggcagcggcg 105
>gb|AC139170.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0058P12, complete sequence Length = 173073 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 515 cggcggtggctgcggcagcg 534 |||||||||||||||||||| Sbjct: 153271 cggcggtggctgcggcagcg 153290
>ref|XM_617417.2| PREDICTED: Bos taurus similar to Cysteine-rich motor neuron 1 protein precursor (CRIM-1) (LOC537260), partial mRNA Length = 1348 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 520 gtggctgcggcagcggcgcagcct 543 ||||| |||||||||||||||||| Sbjct: 187 gtggcggcggcagcggcgcagcct 164
>ref|XM_362172.1| Magnaporthe grisea 70-15 hypothetical protein (MG04617.4) partial cds Length = 5721 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 462 tgttggttgttgttgtttcc 481 |||||||||||||||||||| Sbjct: 1304 tgttggttgttgttgtttcc 1285
>gb|AC183103.2| Pan troglodytes BAC clone CH251-712L4 from chromosome 3, complete sequence Length = 191366 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 gccaggctggaggccagcgg 303 |||||||||||||||||||| Sbjct: 170925 gccaggctggaggccagcgg 170944
>gb|AC166244.4| Mus musculus chromosome 15, clone RP24-403A9, complete sequence Length = 133354 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 515 cggcggtggctgcggcagcggcgc 538 |||||||||| ||||||||||||| Sbjct: 4579 cggcggtggcggcggcagcggcgc 4602
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 522 ggctgcggcagcggcgcagc 541 |||||||||||||||||||| Sbjct: 580663 ggctgcggcagcggcgcagc 580682
>gb|AC131721.4| Mus musculus BAC clone RP23-142L24 from chromosome 15, complete sequence Length = 230892 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 515 cggcggtggctgcggcagcggcgc 538 |||||||||| ||||||||||||| Sbjct: 186435 cggcggtggcggcggcagcggcgc 186458
>ref|XM_811045.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053506999.120) partial mRNA Length = 1509 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 421 cgccgttgaggtccagcacc 440 |||||||||||||||||||| Sbjct: 217 cgccgttgaggtccagcacc 198
>ref|XM_812139.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053510759.100) partial mRNA Length = 1509 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 421 cgccgttgaggtccagcacc 440 |||||||||||||||||||| Sbjct: 217 cgccgttgaggtccagcacc 198
>gb|BC058531.1| Mus musculus phosphodiesterase 1B, Ca2+-calmodulin dependent, mRNA (cDNA clone MGC:67093 IMAGE:6826674), complete cds Length = 4233 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 515 cggcggtggctgcggcagcggcgc 538 |||||||||| ||||||||||||| Sbjct: 189 cggcggtggcggcggcagcggcgc 212
>gb|AC167554.9| Mus musculus chromosome 15, clone RP24-281M24, complete sequence Length = 166875 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 515 cggcggtggctgcggcagcggcgc 538 |||||||||| ||||||||||||| Sbjct: 26864 cggcggtggcggcggcagcggcgc 26841
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 421 cgccgttgaggtccagcacc 440 |||||||||||||||||||| Sbjct: 4162887 cgccgttgaggtccagcacc 4162868 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 gccaggctggaggccagcgg 303 |||||||||||||||||||| Sbjct: 1112686 gccaggctggaggccagcgg 1112667
>gb|AC117422.5| Homo sapiens 3 BAC RP11-158I23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 31686 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 gccaggctggaggccagcgg 303 |||||||||||||||||||| Sbjct: 21347 gccaggctggaggccagcgg 21328
>gb|AC090433.10| Chlamydomonas reinhardtii clone cr-19b23, complete sequence Length = 118183 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 cggccagacagccacggcgg 149 |||||||||||||||||||| Sbjct: 48900 cggccagacagccacggcgg 48881
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 511 tctccggcggtggctgcggc 530 |||||||||||||||||||| Sbjct: 4068411 tctccggcggtggctgcggc 4068392
>gb|AC092782.2| Homo sapiens chromosome 1 clone RP11-411G13, complete sequence Length = 155355 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 515 cggcggtggctgcggcagcggcgc 538 |||||||||||||||| ||||||| Sbjct: 144944 cggcggtggctgcggctgcggcgc 144967
>gb|AC092806.2| Homo sapiens chromosome 1 clone RP11-156F12, complete sequence Length = 153527 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 515 cggcggtggctgcggcagcggcgc 538 |||||||||||||||| ||||||| Sbjct: 36333 cggcggtggctgcggctgcggcgc 36356
>gb|AC157373.3| Medicago truncatula chromosome 7 BAC clone mth2-108g9, complete sequence Length = 95326 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 459 tcgtgttggttgttgttgtt 478 |||||||||||||||||||| Sbjct: 50577 tcgtgttggttgttgttgtt 50558 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 459 tcgtgttggttgttgttgtt 478 |||||||||||||||||||| Sbjct: 36691 tcgtgttggttgttgttgtt 36672
>gb|AC108858.16| Mus musculus chromosome 15, clone RP24-390C21, complete sequence Length = 194163 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 515 cggcggtggctgcggcagcggcgc 538 |||||||||| ||||||||||||| Sbjct: 155346 cggcggtggcggcggcagcggcgc 155323
>gb|AF225492.1|AF225492 Eustenogaster fraterna clone EF211CTT microsatellite sequence Length = 515 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 515 cggcggtggctgcggcagcg 534 |||||||||||||||||||| Sbjct: 213 cggcggtggctgcggcagcg 194
>gb|AF327876.1|AF327876 Chlamydomonas reinhardtii PF6 protein gene, promoter and complete cds Length = 11462 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 274 cagcggcggcgccaggctgg 293 |||||||||||||||||||| Sbjct: 6587 cagcggcggcgccaggctgg 6568
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 515 cggcggtggctgcggcagcg 534 |||||||||||||||||||| Sbjct: 4841622 cggcggtggctgcggcagcg 4841603
>gb|DQ317418.1| Panicum miliaceum KNOTTED1 homeodomain protein (KN1) mRNA, partial cds Length = 1002 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 515 cggcggtggctgcggcagcggcgc 538 |||||||||||||||| ||||||| Sbjct: 111 cggcggtggctgcggcggcggcgc 88
>dbj|AK120356.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013067B07, full insert sequence Length = 4790 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 515 cggcggtggctgcggcagcg 534 |||||||||||||||||||| Sbjct: 117 cggcggtggctgcggcagcg 136
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 515 cggcggtggctgcggcagcg 534 |||||||||||||||||||| Sbjct: 4860406 cggcggtggctgcggcagcg 4860387 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,270,528 Number of Sequences: 3902068 Number of extensions: 6270528 Number of successful extensions: 111803 Number of sequences better than 10.0: 52 Number of HSP's better than 10.0 without gapping: 52 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 111005 Number of HSP's gapped (non-prelim): 798 length of query: 599 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 576 effective length of database: 17,143,297,704 effective search space: 9874539477504 effective search space used: 9874539477504 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
