ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags14a23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_183432.2| Oryza sativa (japonica cultivar-group), mRNA 484 e-133
2dbj|AK067316.1| Oryza sativa (japonica cultivar-group) cDNA clon... 484 e-133
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 228 2e-56
4dbj|AP003727.3| Oryza sativa (japonica cultivar-group) genomic D... 228 2e-56
5dbj|AP008219.1| Oryza sativa (japonica cultivar-group) genomic D... 228 2e-56
6dbj|AP003610.2| Oryza sativa (japonica cultivar-group) genomic D... 228 2e-56
7gb|AC147025.2| Pan troglodytes BAC clone RP43-92C7 from 7, compl... 44 0.58
8gb|AC004885.2| Homo sapiens PAC clone RP4-781A18 from 7, complet... 44 0.58
9gb|AC116692.15| Mus musculus chromosome 1, clone RP24-355C22, co... 42 2.3
10gb|AC123760.9| Mus musculus chromosome 1, clone RP24-327B7, comp... 42 2.3
11gb|AC101940.17| Mus musculus chromosome 3, clone RP24-111E3, com... 42 2.3
12gb|AC158134.8| Mus musculus chromosome 3, clone RP24-384O20, com... 42 2.3
13gb|AC167466.6| Mus musculus chromosome 7, clone RP24-220N8, comp... 40 9.1
14gb|AC159416.1| Trypanosoma brucei chromosome 8 clone RPCI93-25E9... 40 9.1
15gb|AC008146.10| Trypanosoma brucei chromosome 6 clone RPCI93-30P... 40 9.1
16gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence 40 9.1
17gb|AC140113.3| Homo sapiens PAC clone RP1-85D24 from Y, complete... 40 9.1
18gb|AC102432.9| Mus musculus chromosome 19, clone RP24-114A21, co... 40 9.1
19gb|AC161413.5| Mus musculus chromosome 19, clone RP23-106D17, co... 40 9.1
20gb|AC117402.9| Homo sapiens 3 BAC RP11-553A10 (Roswell Park Canc... 40 9.1
21gb|AC153546.10| Mus musculus 10 BAC RP23-356P21 (Roswell Park Ca... 40 9.1
22gb|AC126182.2| Homo sapiens 3 BAC RP11-359H3 (Roswell Park Cance... 40 9.1
23gb|AC140937.1| Gallus gallus chromosome UNK clone TAM32-30E15, c... 40 9.1
24gb|AC128678.8| Homo sapiens 12 BAC RP11-81H3 (Roswell Park Cance... 40 9.1
25gb|AC009289.8|AC009289 Homo sapiens, clone RP11-44J3, complete s... 40 9.1
26dbj|AK181237.1| Mus musculus cDNA, clone:Y0G0117G12, strand:minu... 40 9.1
27gb|AF091042.1|AF091042 Cercospora kikuchii putative cercosporin ... 40 9.1
28emb|AL669982.10| Mouse DNA sequence from clone RP23-297N24 on ch... 40 9.1

>ref|NM_183432.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2223

 Score =  484 bits (244), Expect = e-133
 Identities = 553/655 (84%), Gaps = 1/655 (0%)
 Strand = Plus / Plus

                                                                        
Query: 11   ggctgcagaatgcctccaagngnaccactacgtgtcctggcagtttgttgacctgccgag 70
            ||||||||||| || ||||| | |||||||||| |||||||| ||| |||||||||| ||
Sbjct: 940  ggctgcagaatcccgccaagag-accactacgtatcctggcaatttattgacctgccaag 998

                                                                        
Query: 71   gcaaccggcactagctgttggcttccagttcaacctgactaccaagcaaaccggagacga 130
            |||||| ||    ||||||||||||||||| || || ||| | ||||||   ||||| ||
Sbjct: 999  gcaaccagctgccgctgttggcttccagtttaatctcactgcgaagcaacatggagatga 1058

                                                                        
Query: 131  tgagcacgtgagctttgtcagtgggaccataaactctgacaactatggtgatgagaagct 190
              | || ||||||| ||||||||| || |||||||| ||||| | |  |||||| |||||
Sbjct: 1059 caaacatgtgagctctgtcagtggaactataaactccgacaattttactgatgacaagct 1118

                                                                        
Query: 191  caagacattcagagggacagactccaacgtgctcaagattcagctgtttccccagatata 250
             |||||||||||||||| ||| ||||| ||||||||||||||  ||||||| || | |||
Sbjct: 1119 gaagacattcagagggagagattccaatgtgctcaagattcaattgtttcctcaaacata 1178

                                                                        
Query: 251  caacaaacttaataacctgaagctcttgcagccactgcttcaggacttcactccagggtc 310
            || ||| | | | ||  |||||||  |||| || ||| ||||||||||||||| ||| ||
Sbjct: 1179 catcaatcatcacaatttgaagcttctgcaacctctggttcaggacttcactcaaggttc 1238

                                                                        
Query: 311  taccttttcggatgtcacgagcttgaatgcttccctgcagaaccctaccgatggagtatt 370
            |||||||||  |||| |  | ||||||||||||| |||| |||||||  |||||| || |
Sbjct: 1239 taccttttcaaatgttagaaacttgaatgcttccttgcaaaaccctatggatggaataat 1298

                                                                        
Query: 371  aaacactacactctacataagttatctttcagattacatcgtggagattagcaatgaaag 430
            ||| ||||||||||||||||| ||||||||  | ||||| |||||||||||||| |||| 
Sbjct: 1299 aaatactacactctacataagctatctttccaactacattgtggagattagcaacgaaaa 1358

                                                                        
Query: 431  tgtgttaggcccagtcagtataattgcgagcattggtggcctttatgccttcagtatagc 490
            |||| ||||||||||||||||| |||| || |||||||||||||||||||||||| | ||
Sbjct: 1359 tgtgctaggcccagtcagtatacttgcaagtattggtggcctttatgccttcagtgtggc 1418

                                                                        
Query: 491  aatatttctctgcctcatgtctcaatgtgaagctaggataaagaagctccgtaatgagga 550
            ||||||||| ||||| ||| |||||||||||||||||||||| ||||| ||  | |||||
Sbjct: 1419 aatatttctttgccttatggctcaatgtgaagctaggataaaaaagcttcgagacgagga 1478

                                                                        
Query: 551  tacaagaatgctgaaaattctgagcaaaaggcgagctcaacagaattgggataaggtgag 610
            | | |||||||| ||||| ||||| ||||| || ||||||||||||||||||||||||||
Sbjct: 1479 ttccagaatgctaaaaatactgaggaaaagacgtgctcaacagaattgggataaggtgag 1538

                                                                   
Query: 611  gaagtttgtgatgtatacctggggccctagcaacttggatccaactgacagaagt 665
            ||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 1539 gaagtttgtcatgtatacctggggccctagcaacttggatccaagtgatagaagt 1593



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>dbj|AK067316.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013104J17, full
            insert sequence
          Length = 2223

 Score =  484 bits (244), Expect = e-133
 Identities = 553/655 (84%), Gaps = 1/655 (0%)
 Strand = Plus / Plus

                                                                        
Query: 11   ggctgcagaatgcctccaagngnaccactacgtgtcctggcagtttgttgacctgccgag 70
            ||||||||||| || ||||| | |||||||||| |||||||| ||| |||||||||| ||
Sbjct: 940  ggctgcagaatcccgccaagag-accactacgtatcctggcaatttattgacctgccaag 998

                                                                        
Query: 71   gcaaccggcactagctgttggcttccagttcaacctgactaccaagcaaaccggagacga 130
            |||||| ||    ||||||||||||||||| || || ||| | ||||||   ||||| ||
Sbjct: 999  gcaaccagctgccgctgttggcttccagtttaatctcactgcgaagcaacatggagatga 1058

                                                                        
Query: 131  tgagcacgtgagctttgtcagtgggaccataaactctgacaactatggtgatgagaagct 190
              | || ||||||| ||||||||| || |||||||| ||||| | |  |||||| |||||
Sbjct: 1059 caaacatgtgagctctgtcagtggaactataaactccgacaattttactgatgacaagct 1118

                                                                        
Query: 191  caagacattcagagggacagactccaacgtgctcaagattcagctgtttccccagatata 250
             |||||||||||||||| ||| ||||| ||||||||||||||  ||||||| || | |||
Sbjct: 1119 gaagacattcagagggagagattccaatgtgctcaagattcaattgtttcctcaaacata 1178

                                                                        
Query: 251  caacaaacttaataacctgaagctcttgcagccactgcttcaggacttcactccagggtc 310
            || ||| | | | ||  |||||||  |||| || ||| ||||||||||||||| ||| ||
Sbjct: 1179 catcaatcatcacaatttgaagcttctgcaacctctggttcaggacttcactcaaggttc 1238

                                                                        
Query: 311  taccttttcggatgtcacgagcttgaatgcttccctgcagaaccctaccgatggagtatt 370
            |||||||||  |||| |  | ||||||||||||| |||| |||||||  |||||| || |
Sbjct: 1239 taccttttcaaatgttagaaacttgaatgcttccttgcaaaaccctatggatggaataat 1298

                                                                        
Query: 371  aaacactacactctacataagttatctttcagattacatcgtggagattagcaatgaaag 430
            ||| ||||||||||||||||| ||||||||  | ||||| |||||||||||||| |||| 
Sbjct: 1299 aaatactacactctacataagctatctttccaactacattgtggagattagcaacgaaaa 1358

                                                                        
Query: 431  tgtgttaggcccagtcagtataattgcgagcattggtggcctttatgccttcagtatagc 490
            |||| ||||||||||||||||| |||| || |||||||||||||||||||||||| | ||
Sbjct: 1359 tgtgctaggcccagtcagtatacttgcaagtattggtggcctttatgccttcagtgtggc 1418

                                                                        
Query: 491  aatatttctctgcctcatgtctcaatgtgaagctaggataaagaagctccgtaatgagga 550
            ||||||||| ||||| ||| |||||||||||||||||||||| ||||| ||  | |||||
Sbjct: 1419 aatatttctttgccttatggctcaatgtgaagctaggataaaaaagcttcgagacgagga 1478

                                                                        
Query: 551  tacaagaatgctgaaaattctgagcaaaaggcgagctcaacagaattgggataaggtgag 610
            | | |||||||| ||||| ||||| ||||| || ||||||||||||||||||||||||||
Sbjct: 1479 ttccagaatgctaaaaatactgaggaaaagacgtgctcaacagaattgggataaggtgag 1538

                                                                   
Query: 611  gaagtttgtgatgtatacctggggccctagcaacttggatccaactgacagaagt 665
            ||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 1539 gaagtttgtcatgtatacctggggccctagcaacttggatccaagtgatagaagt 1593



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             complete sequence
          Length = 43261740

 Score =  228 bits (115), Expect = 2e-56
 Identities = 355/434 (81%), Gaps = 1/434 (0%)
 Strand = Plus / Plus

                                                                         
Query: 11    ggctgcagaatgcctccaagngnaccactacgtgtcctggcagtttgttgacctgccgag 70
             ||||||||||| || ||||| | |||||||||| |||||||| ||| |||||||||| ||
Sbjct: 16826 ggctgcagaatcccgccaagag-accactacgtatcctggcaatttattgacctgccaag 16884

                                                                         
Query: 71    gcaaccggcactagctgttggcttccagttcaacctgactaccaagcaaaccggagacga 130
             |||||| ||    ||||||||||||||||| || || ||| | ||||||   ||||| ||
Sbjct: 16885 gcaaccagctgccgctgttggcttccagtttaatctcactgcgaagcaacatggagatga 16944

                                                                         
Query: 131   tgagcacgtgagctttgtcagtgggaccataaactctgacaactatggtgatgagaagct 190
               | || ||||||| ||||||||| || |||||||| ||||| | |  |||||| |||||
Sbjct: 16945 caaacatgtgagctctgtcagtggaactataaactccgacaattttactgatgacaagct 17004

                                                                         
Query: 191   caagacattcagagggacagactccaacgtgctcaagattcagctgtttccccagatata 250
              |||||||||||||||| ||| ||||| ||||||||||||||  ||||||| || | |||
Sbjct: 17005 gaagacattcagagggagagattccaatgtgctcaagattcaattgtttcctcaaacata 17064

                                                                         
Query: 251   caacaaacttaataacctgaagctcttgcagccactgcttcaggacttcactccagggtc 310
             || ||| | | | ||  |||||||  |||| || ||| ||||||||||||||| ||| ||
Sbjct: 17065 catcaatcatcacaatttgaagcttctgcaacctctggttcaggacttcactcaaggttc 17124

                                                                         
Query: 311   taccttttcggatgtcacgagcttgaatgcttccctgcagaaccctaccgatggagtatt 370
             |||||||||  |||| |  | ||||||||||||| |||| |||||||  |||||| || |
Sbjct: 17125 taccttttcaaatgttagaaacttgaatgcttccttgcaaaaccctatggatggaataat 17184

                                                                         
Query: 371   aaacactacactctacataagttatctttcagattacatcgtggagattagcaatgaaag 430
             ||| ||||||||||||||||| ||||||||  | ||||| |||||||||||||| |||| 
Sbjct: 17185 aaatactacactctacataagctatctttccaactacattgtggagattagcaacgaaaa 17244

                           
Query: 431   tgtgttaggcccag 444
             |||| |||||||||
Sbjct: 17245 tgtgctaggcccag 17258



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 59/62 (95%)
 Strand = Plus / Plus

                                                                         
Query: 604   aggtgaggaagtttgtgatgtatacctggggccctagcaacttggatccaactgacagaa 663
             |||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 18140 aggtgaggaagtttgtcatgtatacctggggccctagcaacttggatccaagtgatagaa 18199

               
Query: 664   gt 665
             ||
Sbjct: 18200 gt 18201



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 82/94 (87%)
 Strand = Plus / Plus

                                                                         
Query: 516   tgtgaagctaggataaagaagctccgtaatgaggatacaagaatgctgaaaattctgagc 575
             ||||||||||||||||| ||||| ||  | |||||| | |||||||| ||||| ||||| 
Sbjct: 17968 tgtgaagctaggataaaaaagcttcgagacgaggattccagaatgctaaaaatactgagg 18027

                                               
Query: 576   aaaaggcgagctcaacagaattgggataaggtga 609
             ||||| || |||||||||||||||||||||||||
Sbjct: 18028 aaaagacgtgctcaacagaattgggataaggtga 18061



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 66/74 (89%)
 Strand = Plus / Plus

                                                                         
Query: 442   cagtcagtataattgcgagcattggtggcctttatgccttcagtatagcaatatttctct 501
             ||||||||||| |||| || |||||||||||||||||||||||| | ||||||||||| |
Sbjct: 17498 cagtcagtatacttgcaagtattggtggcctttatgccttcagtgtggcaatatttcttt 17557

                           
Query: 502   gcctcatgtctcaa 515
             |||| ||| |||||
Sbjct: 17558 gccttatggctcaa 17571



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>dbj|AP003727.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0672D08
          Length = 173729

 Score =  228 bits (115), Expect = 2e-56
 Identities = 355/434 (81%), Gaps = 1/434 (0%)
 Strand = Plus / Plus

                                                                         
Query: 11    ggctgcagaatgcctccaagngnaccactacgtgtcctggcagtttgttgacctgccgag 70
             ||||||||||| || ||||| | |||||||||| |||||||| ||| |||||||||| ||
Sbjct: 14628 ggctgcagaatcccgccaagag-accactacgtatcctggcaatttattgacctgccaag 14686

                                                                         
Query: 71    gcaaccggcactagctgttggcttccagttcaacctgactaccaagcaaaccggagacga 130
             |||||| ||    ||||||||||||||||| || || ||| | ||||||   ||||| ||
Sbjct: 14687 gcaaccagctgccgctgttggcttccagtttaatctcactgcgaagcaacatggagatga 14746

                                                                         
Query: 131   tgagcacgtgagctttgtcagtgggaccataaactctgacaactatggtgatgagaagct 190
               | || ||||||| ||||||||| || |||||||| ||||| | |  |||||| |||||
Sbjct: 14747 caaacatgtgagctctgtcagtggaactataaactccgacaattttactgatgacaagct 14806

                                                                         
Query: 191   caagacattcagagggacagactccaacgtgctcaagattcagctgtttccccagatata 250
              |||||||||||||||| ||| ||||| ||||||||||||||  ||||||| || | |||
Sbjct: 14807 gaagacattcagagggagagattccaatgtgctcaagattcaattgtttcctcaaacata 14866

                                                                         
Query: 251   caacaaacttaataacctgaagctcttgcagccactgcttcaggacttcactccagggtc 310
             || ||| | | | ||  |||||||  |||| || ||| ||||||||||||||| ||| ||
Sbjct: 14867 catcaatcatcacaatttgaagcttctgcaacctctggttcaggacttcactcaaggttc 14926

                                                                         
Query: 311   taccttttcggatgtcacgagcttgaatgcttccctgcagaaccctaccgatggagtatt 370
             |||||||||  |||| |  | ||||||||||||| |||| |||||||  |||||| || |
Sbjct: 14927 taccttttcaaatgttagaaacttgaatgcttccttgcaaaaccctatggatggaataat 14986

                                                                         
Query: 371   aaacactacactctacataagttatctttcagattacatcgtggagattagcaatgaaag 430
             ||| ||||||||||||||||| ||||||||  | ||||| |||||||||||||| |||| 
Sbjct: 14987 aaatactacactctacataagctatctttccaactacattgtggagattagcaacgaaaa 15046

                           
Query: 431   tgtgttaggcccag 444
             |||| |||||||||
Sbjct: 15047 tgtgctaggcccag 15060



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 59/62 (95%)
 Strand = Plus / Plus

                                                                         
Query: 604   aggtgaggaagtttgtgatgtatacctggggccctagcaacttggatccaactgacagaa 663
             |||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 15942 aggtgaggaagtttgtcatgtatacctggggccctagcaacttggatccaagtgatagaa 16001

               
Query: 664   gt 665
             ||
Sbjct: 16002 gt 16003



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 82/94 (87%)
 Strand = Plus / Plus

                                                                         
Query: 516   tgtgaagctaggataaagaagctccgtaatgaggatacaagaatgctgaaaattctgagc 575
             ||||||||||||||||| ||||| ||  | |||||| | |||||||| ||||| ||||| 
Sbjct: 15770 tgtgaagctaggataaaaaagcttcgagacgaggattccagaatgctaaaaatactgagg 15829

                                               
Query: 576   aaaaggcgagctcaacagaattgggataaggtga 609
             ||||| || |||||||||||||||||||||||||
Sbjct: 15830 aaaagacgtgctcaacagaattgggataaggtga 15863



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 66/74 (89%)
 Strand = Plus / Plus

                                                                         
Query: 442   cagtcagtataattgcgagcattggtggcctttatgccttcagtatagcaatatttctct 501
             ||||||||||| |||| || |||||||||||||||||||||||| | ||||||||||| |
Sbjct: 15300 cagtcagtatacttgcaagtattggtggcctttatgccttcagtgtggcaatatttcttt 15359

                           
Query: 502   gcctcatgtctcaa 515
             |||| ||| |||||
Sbjct: 15360 gccttatggctcaa 15373



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>dbj|AP008219.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             fosmid clone:OSJNOa264G09
          Length = 31687

 Score =  228 bits (115), Expect = 2e-56
 Identities = 355/434 (81%), Gaps = 1/434 (0%)
 Strand = Plus / Plus

                                                                         
Query: 11    ggctgcagaatgcctccaagngnaccactacgtgtcctggcagtttgttgacctgccgag 70
             ||||||||||| || ||||| | |||||||||| |||||||| ||| |||||||||| ||
Sbjct: 16826 ggctgcagaatcccgccaagag-accactacgtatcctggcaatttattgacctgccaag 16884

                                                                         
Query: 71    gcaaccggcactagctgttggcttccagttcaacctgactaccaagcaaaccggagacga 130
             |||||| ||    ||||||||||||||||| || || ||| | ||||||   ||||| ||
Sbjct: 16885 gcaaccagctgccgctgttggcttccagtttaatctcactgcgaagcaacatggagatga 16944

                                                                         
Query: 131   tgagcacgtgagctttgtcagtgggaccataaactctgacaactatggtgatgagaagct 190
               | || ||||||| ||||||||| || |||||||| ||||| | |  |||||| |||||
Sbjct: 16945 caaacatgtgagctctgtcagtggaactataaactccgacaattttactgatgacaagct 17004

                                                                         
Query: 191   caagacattcagagggacagactccaacgtgctcaagattcagctgtttccccagatata 250
              |||||||||||||||| ||| ||||| ||||||||||||||  ||||||| || | |||
Sbjct: 17005 gaagacattcagagggagagattccaatgtgctcaagattcaattgtttcctcaaacata 17064

                                                                         
Query: 251   caacaaacttaataacctgaagctcttgcagccactgcttcaggacttcactccagggtc 310
             || ||| | | | ||  |||||||  |||| || ||| ||||||||||||||| ||| ||
Sbjct: 17065 catcaatcatcacaatttgaagcttctgcaacctctggttcaggacttcactcaaggttc 17124

                                                                         
Query: 311   taccttttcggatgtcacgagcttgaatgcttccctgcagaaccctaccgatggagtatt 370
             |||||||||  |||| |  | ||||||||||||| |||| |||||||  |||||| || |
Sbjct: 17125 taccttttcaaatgttagaaacttgaatgcttccttgcaaaaccctatggatggaataat 17184

                                                                         
Query: 371   aaacactacactctacataagttatctttcagattacatcgtggagattagcaatgaaag 430
             ||| ||||||||||||||||| ||||||||  | ||||| |||||||||||||| |||| 
Sbjct: 17185 aaatactacactctacataagctatctttccaactacattgtggagattagcaacgaaaa 17244

                           
Query: 431   tgtgttaggcccag 444
             |||| |||||||||
Sbjct: 17245 tgtgctaggcccag 17258



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 59/62 (95%)
 Strand = Plus / Plus

                                                                         
Query: 604   aggtgaggaagtttgtgatgtatacctggggccctagcaacttggatccaactgacagaa 663
             |||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 18140 aggtgaggaagtttgtcatgtatacctggggccctagcaacttggatccaagtgatagaa 18199

               
Query: 664   gt 665
             ||
Sbjct: 18200 gt 18201



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 82/94 (87%)
 Strand = Plus / Plus

                                                                         
Query: 516   tgtgaagctaggataaagaagctccgtaatgaggatacaagaatgctgaaaattctgagc 575
             ||||||||||||||||| ||||| ||  | |||||| | |||||||| ||||| ||||| 
Sbjct: 17968 tgtgaagctaggataaaaaagcttcgagacgaggattccagaatgctaaaaatactgagg 18027

                                               
Query: 576   aaaaggcgagctcaacagaattgggataaggtga 609
             ||||| || |||||||||||||||||||||||||
Sbjct: 18028 aaaagacgtgctcaacagaattgggataaggtga 18061



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 66/74 (89%)
 Strand = Plus / Plus

                                                                         
Query: 442   cagtcagtataattgcgagcattggtggcctttatgccttcagtatagcaatatttctct 501
             ||||||||||| |||| || |||||||||||||||||||||||| | ||||||||||| |
Sbjct: 17498 cagtcagtatacttgcaagtattggtggcctttatgccttcagtgtggcaatatttcttt 17557

                           
Query: 502   gcctcatgtctcaa 515
             |||| ||| |||||
Sbjct: 17558 gccttatggctcaa 17571



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>dbj|AP003610.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0402A09
          Length = 141966

 Score =  228 bits (115), Expect = 2e-56
 Identities = 355/434 (81%), Gaps = 1/434 (0%)
 Strand = Plus / Plus

                                                                        
Query: 11   ggctgcagaatgcctccaagngnaccactacgtgtcctggcagtttgttgacctgccgag 70
            ||||||||||| || ||||| | |||||||||| |||||||| ||| |||||||||| ||
Sbjct: 1756 ggctgcagaatcccgccaagag-accactacgtatcctggcaatttattgacctgccaag 1814

                                                                        
Query: 71   gcaaccggcactagctgttggcttccagttcaacctgactaccaagcaaaccggagacga 130
            |||||| ||    ||||||||||||||||| || || ||| | ||||||   ||||| ||
Sbjct: 1815 gcaaccagctgccgctgttggcttccagtttaatctcactgcgaagcaacatggagatga 1874

                                                                        
Query: 131  tgagcacgtgagctttgtcagtgggaccataaactctgacaactatggtgatgagaagct 190
              | || ||||||| ||||||||| || |||||||| ||||| | |  |||||| |||||
Sbjct: 1875 caaacatgtgagctctgtcagtggaactataaactccgacaattttactgatgacaagct 1934

                                                                        
Query: 191  caagacattcagagggacagactccaacgtgctcaagattcagctgtttccccagatata 250
             |||||||||||||||| ||| ||||| ||||||||||||||  ||||||| || | |||
Sbjct: 1935 gaagacattcagagggagagattccaatgtgctcaagattcaattgtttcctcaaacata 1994

                                                                        
Query: 251  caacaaacttaataacctgaagctcttgcagccactgcttcaggacttcactccagggtc 310
            || ||| | | | ||  |||||||  |||| || ||| ||||||||||||||| ||| ||
Sbjct: 1995 catcaatcatcacaatttgaagcttctgcaacctctggttcaggacttcactcaaggttc 2054

                                                                        
Query: 311  taccttttcggatgtcacgagcttgaatgcttccctgcagaaccctaccgatggagtatt 370
            |||||||||  |||| |  | ||||||||||||| |||| |||||||  |||||| || |
Sbjct: 2055 taccttttcaaatgttagaaacttgaatgcttccttgcaaaaccctatggatggaataat 2114

                                                                        
Query: 371  aaacactacactctacataagttatctttcagattacatcgtggagattagcaatgaaag 430
            ||| ||||||||||||||||| ||||||||  | ||||| |||||||||||||| |||| 
Sbjct: 2115 aaatactacactctacataagctatctttccaactacattgtggagattagcaacgaaaa 2174

                          
Query: 431  tgtgttaggcccag 444
            |||| |||||||||
Sbjct: 2175 tgtgctaggcccag 2188



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 59/62 (95%)
 Strand = Plus / Plus

                                                                        
Query: 604  aggtgaggaagtttgtgatgtatacctggggccctagcaacttggatccaactgacagaa 663
            |||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 3070 aggtgaggaagtttgtcatgtatacctggggccctagcaacttggatccaagtgatagaa 3129

              
Query: 664  gt 665
            ||
Sbjct: 3130 gt 3131



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 82/94 (87%)
 Strand = Plus / Plus

                                                                        
Query: 516  tgtgaagctaggataaagaagctccgtaatgaggatacaagaatgctgaaaattctgagc 575
            ||||||||||||||||| ||||| ||  | |||||| | |||||||| ||||| ||||| 
Sbjct: 2898 tgtgaagctaggataaaaaagcttcgagacgaggattccagaatgctaaaaatactgagg 2957

                                              
Query: 576  aaaaggcgagctcaacagaattgggataaggtga 609
            ||||| || |||||||||||||||||||||||||
Sbjct: 2958 aaaagacgtgctcaacagaattgggataaggtga 2991



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 66/74 (89%)
 Strand = Plus / Plus

                                                                        
Query: 442  cagtcagtataattgcgagcattggtggcctttatgccttcagtatagcaatatttctct 501
            ||||||||||| |||| || |||||||||||||||||||||||| | ||||||||||| |
Sbjct: 2428 cagtcagtatacttgcaagtattggtggcctttatgccttcagtgtggcaatatttcttt 2487

                          
Query: 502  gcctcatgtctcaa 515
            |||| ||| |||||
Sbjct: 2488 gccttatggctcaa 2501



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>gb|AC147025.2| Pan troglodytes BAC clone RP43-92C7 from 7, complete sequence
          Length = 142948

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 83     agctgttggcttccagttcaac 104
              ||||||||||||||||||||||
Sbjct: 133183 agctgttggcttccagttcaac 133162



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>gb|AC004885.2| Homo sapiens PAC clone RP4-781A18 from 7, complete sequence
          Length = 190842

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 83     agctgttggcttccagttcaac 104
              ||||||||||||||||||||||
Sbjct: 149059 agctgttggcttccagttcaac 149038



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>gb|AC116692.15| Mus musculus chromosome 1, clone RP24-355C22, complete sequence
          Length = 149630

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 235   tgtttccccagatatacaacaaact 259
             |||||| ||||||||||||||||||
Sbjct: 85749 tgtttcaccagatatacaacaaact 85725



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>gb|AC123760.9| Mus musculus chromosome 1, clone RP24-327B7, complete sequence
          Length = 171818

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 235   tgtttccccagatatacaacaaact 259
             |||||| ||||||||||||||||||
Sbjct: 30865 tgtttcaccagatatacaacaaact 30889



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>gb|AC101940.17| Mus musculus chromosome 3, clone RP24-111E3, complete sequence
          Length = 157242

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 634   gccctagcaacttggatccaactga 658
             ||||||| |||||||||||||||||
Sbjct: 70564 gccctaggaacttggatccaactga 70540



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>gb|AC158134.8| Mus musculus chromosome 3, clone RP24-384O20, complete sequence
          Length = 209278

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 634    gccctagcaacttggatccaactga 658
              ||||||| |||||||||||||||||
Sbjct: 207706 gccctaggaacttggatccaactga 207730



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>gb|AC167466.6| Mus musculus chromosome 7, clone RP24-220N8, complete sequence
          Length = 163721

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 337  atgcttccctgcagaaccct 356
            ||||||||||||||||||||
Sbjct: 6666 atgcttccctgcagaaccct 6647



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>gb|AC159416.1| Trypanosoma brucei chromosome 8 clone RPCI93-25E9, complete sequence
          Length = 150829

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 395  tctttcagattacatcgtgg 414
            ||||||||||||||||||||
Sbjct: 9327 tctttcagattacatcgtgg 9308



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>gb|AC008146.10| Trypanosoma brucei chromosome 6 clone RPCI93-30P15, complete sequence
          Length = 127405

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 395  tctttcagattacatcgtgg 414
            ||||||||||||||||||||
Sbjct: 4454 tctttcagattacatcgtgg 4435



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>gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence
          Length = 2481190

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 395  tctttcagattacatcgtgg 414
            ||||||||||||||||||||
Sbjct: 9327 tctttcagattacatcgtgg 9308



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>gb|AC140113.3| Homo sapiens PAC clone RP1-85D24 from Y, complete sequence
          Length = 155655

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 613   agtttgtgatgtatacctggggcc 636
             |||||||||||| |||||||||||
Sbjct: 98002 agtttgtgatgtctacctggggcc 98025



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>gb|AC102432.9| Mus musculus chromosome 19, clone RP24-114A21, complete sequence
          Length = 199240

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 337    atgcttccctgcagaaccct 356
              ||||||||||||||||||||
Sbjct: 106963 atgcttccctgcagaaccct 106982



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>gb|AC161413.5| Mus musculus chromosome 19, clone RP23-106D17, complete sequence
          Length = 215356

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 337   atgcttccctgcagaaccct 356
             ||||||||||||||||||||
Sbjct: 24099 atgcttccctgcagaaccct 24080



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>gb|AC117402.9| Homo sapiens 3 BAC RP11-553A10 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 166999

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 486    atagcaatatttctctgcct 505
              ||||||||||||||||||||
Sbjct: 116559 atagcaatatttctctgcct 116578



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>gb|AC153546.10| Mus musculus 10 BAC RP23-356P21 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 207122

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 599    ggataaggtgaggaagtttg 618
              ||||||||||||||||||||
Sbjct: 104079 ggataaggtgaggaagtttg 104098



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>gb|AC126182.2| Homo sapiens 3 BAC RP11-359H3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 196944

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 369   ttaaacactacactctacat 388
             ||||||||||||||||||||
Sbjct: 59347 ttaaacactacactctacat 59366



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>gb|AC140937.1| Gallus gallus chromosome UNK clone TAM32-30E15, complete sequence
          Length = 99650

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 493   tatttctctgcctcatgtct 512
             ||||||||||||||||||||
Sbjct: 78630 tatttctctgcctcatgtct 78611



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>gb|AC128678.8| Homo sapiens 12 BAC RP11-81H3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 102595

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 553   caagaatgctgaaaattctg 572
             ||||||||||||||||||||
Sbjct: 18761 caagaatgctgaaaattctg 18780



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>gb|AC009289.8|AC009289 Homo sapiens, clone RP11-44J3, complete sequence
          Length = 146010

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 369    ttaaacactacactctacat 388
              ||||||||||||||||||||
Sbjct: 114314 ttaaacactacactctacat 114333



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>dbj|AK181237.1| Mus musculus cDNA, clone:Y0G0117G12, strand:minus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000068056, based on BLAT search
          Length = 338

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 254 caaacttaataacctgaagctctt 277
           |||||||||||||| |||||||||
Sbjct: 153 caaacttaataaccggaagctctt 176



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>gb|AF091042.1|AF091042 Cercospora kikuchii putative cercosporin transporter gene, complete
            cds
          Length = 3312

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 269  gaagctcttgcagccactgc 288
            ||||||||||||||||||||
Sbjct: 1520 gaagctcttgcagccactgc 1539



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>emb|AL669982.10| Mouse DNA sequence from clone RP23-297N24 on chromosome 4, complete
              sequence
          Length = 240125

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 273    ctcttgcagccactgcttca 292
              ||||||||||||||||||||
Sbjct: 165474 ctcttgcagccactgcttca 165455


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,065,677
Number of Sequences: 3902068
Number of extensions: 5065677
Number of successful extensions: 90618
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90497
Number of HSP's gapped (non-prelim): 103
length of query: 665
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 642
effective length of database: 17,143,297,704
effective search space: 11005997125968
effective search space used: 11005997125968
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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