No.
Definition
Score (bits)
E Value
1 ref|NM_183432.2| Oryza sativa (japonica cultivar-group), mRNA
484
e-133
2 dbj|AK067316.1| Oryza sativa (japonica cultivar-group) cDNA clon...
484
e-133
3 dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D...
228
2e-56
4 dbj|AP003727.3| Oryza sativa (japonica cultivar-group) genomic D...
228
2e-56
5 dbj|AP008219.1| Oryza sativa (japonica cultivar-group) genomic D...
228
2e-56
6 dbj|AP003610.2| Oryza sativa (japonica cultivar-group) genomic D...
228
2e-56
7 gb|AC147025.2| Pan troglodytes BAC clone RP43-92C7 from 7, compl...
44
0.58
8 gb|AC004885.2| Homo sapiens PAC clone RP4-781A18 from 7, complet...
44
0.58
9 gb|AC116692.15| Mus musculus chromosome 1, clone RP24-355C22, co...
42
2.3
10 gb|AC123760.9| Mus musculus chromosome 1, clone RP24-327B7, comp...
42
2.3
11 gb|AC101940.17| Mus musculus chromosome 3, clone RP24-111E3, com...
42
2.3
12 gb|AC158134.8| Mus musculus chromosome 3, clone RP24-384O20, com...
42
2.3
13 gb|AC167466.6| Mus musculus chromosome 7, clone RP24-220N8, comp...
40
9.1
14 gb|AC159416.1| Trypanosoma brucei chromosome 8 clone RPCI93-25E9...
40
9.1
15 gb|AC008146.10| Trypanosoma brucei chromosome 6 clone RPCI93-30P...
40
9.1
16 gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence
40
9.1
17 gb|AC140113.3| Homo sapiens PAC clone RP1-85D24 from Y, complete...
40
9.1
18 gb|AC102432.9| Mus musculus chromosome 19, clone RP24-114A21, co...
40
9.1
19 gb|AC161413.5| Mus musculus chromosome 19, clone RP23-106D17, co...
40
9.1
20 gb|AC117402.9| Homo sapiens 3 BAC RP11-553A10 (Roswell Park Canc...
40
9.1
21 gb|AC153546.10| Mus musculus 10 BAC RP23-356P21 (Roswell Park Ca...
40
9.1
22 gb|AC126182.2| Homo sapiens 3 BAC RP11-359H3 (Roswell Park Cance...
40
9.1
23 gb|AC140937.1| Gallus gallus chromosome UNK clone TAM32-30E15, c...
40
9.1
24 gb|AC128678.8| Homo sapiens 12 BAC RP11-81H3 (Roswell Park Cance...
40
9.1
25 gb|AC009289.8|AC009289 Homo sapiens, clone RP11-44J3, complete s...
40
9.1
26 dbj|AK181237.1| Mus musculus cDNA, clone:Y0G0117G12, strand:minu...
40
9.1
27 gb|AF091042.1|AF091042 Cercospora kikuchii putative cercosporin ...
40
9.1
28 emb|AL669982.10| Mouse DNA sequence from clone RP23-297N24 on ch...
40
9.1
>dbj|AP008207.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
complete sequence
Length = 43261740
Score = 228 bits (115), Expect = 2e-56
Identities = 355/434 (81%), Gaps = 1/434 (0%)
Strand = Plus / Plus
Query: 11 ggctgcagaatgcctccaagngnaccactacgtgtcctggcagtttgttgacctgccgag 70
||||||||||| || ||||| | |||||||||| |||||||| ||| |||||||||| ||
Sbjct: 16826 ggctgcagaatcccgccaagag-accactacgtatcctggcaatttattgacctgccaag 16884
Query: 71 gcaaccggcactagctgttggcttccagttcaacctgactaccaagcaaaccggagacga 130
|||||| || ||||||||||||||||| || || ||| | |||||| ||||| ||
Sbjct: 16885 gcaaccagctgccgctgttggcttccagtttaatctcactgcgaagcaacatggagatga 16944
Query: 131 tgagcacgtgagctttgtcagtgggaccataaactctgacaactatggtgatgagaagct 190
| || ||||||| ||||||||| || |||||||| ||||| | | |||||| |||||
Sbjct: 16945 caaacatgtgagctctgtcagtggaactataaactccgacaattttactgatgacaagct 17004
Query: 191 caagacattcagagggacagactccaacgtgctcaagattcagctgtttccccagatata 250
|||||||||||||||| ||| ||||| |||||||||||||| ||||||| || | |||
Sbjct: 17005 gaagacattcagagggagagattccaatgtgctcaagattcaattgtttcctcaaacata 17064
Query: 251 caacaaacttaataacctgaagctcttgcagccactgcttcaggacttcactccagggtc 310
|| ||| | | | || ||||||| |||| || ||| ||||||||||||||| ||| ||
Sbjct: 17065 catcaatcatcacaatttgaagcttctgcaacctctggttcaggacttcactcaaggttc 17124
Query: 311 taccttttcggatgtcacgagcttgaatgcttccctgcagaaccctaccgatggagtatt 370
||||||||| |||| | | ||||||||||||| |||| ||||||| |||||| || |
Sbjct: 17125 taccttttcaaatgttagaaacttgaatgcttccttgcaaaaccctatggatggaataat 17184
Query: 371 aaacactacactctacataagttatctttcagattacatcgtggagattagcaatgaaag 430
||| ||||||||||||||||| |||||||| | ||||| |||||||||||||| ||||
Sbjct: 17185 aaatactacactctacataagctatctttccaactacattgtggagattagcaacgaaaa 17244
Query: 431 tgtgttaggcccag 444
|||| |||||||||
Sbjct: 17245 tgtgctaggcccag 17258
Score = 99.6 bits (50), Expect = 1e-17
Identities = 59/62 (95%)
Strand = Plus / Plus
Query: 604 aggtgaggaagtttgtgatgtatacctggggccctagcaacttggatccaactgacagaa 663
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 18140 aggtgaggaagtttgtcatgtatacctggggccctagcaacttggatccaagtgatagaa 18199
Query: 664 gt 665
||
Sbjct: 18200 gt 18201
Score = 91.7 bits (46), Expect = 3e-15
Identities = 82/94 (87%)
Strand = Plus / Plus
Query: 516 tgtgaagctaggataaagaagctccgtaatgaggatacaagaatgctgaaaattctgagc 575
||||||||||||||||| ||||| || | |||||| | |||||||| ||||| |||||
Sbjct: 17968 tgtgaagctaggataaaaaagcttcgagacgaggattccagaatgctaaaaatactgagg 18027
Query: 576 aaaaggcgagctcaacagaattgggataaggtga 609
||||| || |||||||||||||||||||||||||
Sbjct: 18028 aaaagacgtgctcaacagaattgggataaggtga 18061
Score = 83.8 bits (42), Expect = 7e-13
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 442 cagtcagtataattgcgagcattggtggcctttatgccttcagtatagcaatatttctct 501
||||||||||| |||| || |||||||||||||||||||||||| | ||||||||||| |
Sbjct: 17498 cagtcagtatacttgcaagtattggtggcctttatgccttcagtgtggcaatatttcttt 17557
Query: 502 gcctcatgtctcaa 515
|||| ||| |||||
Sbjct: 17558 gccttatggctcaa 17571
>dbj|AP003727.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0672D08
Length = 173729
Score = 228 bits (115), Expect = 2e-56
Identities = 355/434 (81%), Gaps = 1/434 (0%)
Strand = Plus / Plus
Query: 11 ggctgcagaatgcctccaagngnaccactacgtgtcctggcagtttgttgacctgccgag 70
||||||||||| || ||||| | |||||||||| |||||||| ||| |||||||||| ||
Sbjct: 14628 ggctgcagaatcccgccaagag-accactacgtatcctggcaatttattgacctgccaag 14686
Query: 71 gcaaccggcactagctgttggcttccagttcaacctgactaccaagcaaaccggagacga 130
|||||| || ||||||||||||||||| || || ||| | |||||| ||||| ||
Sbjct: 14687 gcaaccagctgccgctgttggcttccagtttaatctcactgcgaagcaacatggagatga 14746
Query: 131 tgagcacgtgagctttgtcagtgggaccataaactctgacaactatggtgatgagaagct 190
| || ||||||| ||||||||| || |||||||| ||||| | | |||||| |||||
Sbjct: 14747 caaacatgtgagctctgtcagtggaactataaactccgacaattttactgatgacaagct 14806
Query: 191 caagacattcagagggacagactccaacgtgctcaagattcagctgtttccccagatata 250
|||||||||||||||| ||| ||||| |||||||||||||| ||||||| || | |||
Sbjct: 14807 gaagacattcagagggagagattccaatgtgctcaagattcaattgtttcctcaaacata 14866
Query: 251 caacaaacttaataacctgaagctcttgcagccactgcttcaggacttcactccagggtc 310
|| ||| | | | || ||||||| |||| || ||| ||||||||||||||| ||| ||
Sbjct: 14867 catcaatcatcacaatttgaagcttctgcaacctctggttcaggacttcactcaaggttc 14926
Query: 311 taccttttcggatgtcacgagcttgaatgcttccctgcagaaccctaccgatggagtatt 370
||||||||| |||| | | ||||||||||||| |||| ||||||| |||||| || |
Sbjct: 14927 taccttttcaaatgttagaaacttgaatgcttccttgcaaaaccctatggatggaataat 14986
Query: 371 aaacactacactctacataagttatctttcagattacatcgtggagattagcaatgaaag 430
||| ||||||||||||||||| |||||||| | ||||| |||||||||||||| ||||
Sbjct: 14987 aaatactacactctacataagctatctttccaactacattgtggagattagcaacgaaaa 15046
Query: 431 tgtgttaggcccag 444
|||| |||||||||
Sbjct: 15047 tgtgctaggcccag 15060
Score = 99.6 bits (50), Expect = 1e-17
Identities = 59/62 (95%)
Strand = Plus / Plus
Query: 604 aggtgaggaagtttgtgatgtatacctggggccctagcaacttggatccaactgacagaa 663
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 15942 aggtgaggaagtttgtcatgtatacctggggccctagcaacttggatccaagtgatagaa 16001
Query: 664 gt 665
||
Sbjct: 16002 gt 16003
Score = 91.7 bits (46), Expect = 3e-15
Identities = 82/94 (87%)
Strand = Plus / Plus
Query: 516 tgtgaagctaggataaagaagctccgtaatgaggatacaagaatgctgaaaattctgagc 575
||||||||||||||||| ||||| || | |||||| | |||||||| ||||| |||||
Sbjct: 15770 tgtgaagctaggataaaaaagcttcgagacgaggattccagaatgctaaaaatactgagg 15829
Query: 576 aaaaggcgagctcaacagaattgggataaggtga 609
||||| || |||||||||||||||||||||||||
Sbjct: 15830 aaaagacgtgctcaacagaattgggataaggtga 15863
Score = 83.8 bits (42), Expect = 7e-13
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 442 cagtcagtataattgcgagcattggtggcctttatgccttcagtatagcaatatttctct 501
||||||||||| |||| || |||||||||||||||||||||||| | ||||||||||| |
Sbjct: 15300 cagtcagtatacttgcaagtattggtggcctttatgccttcagtgtggcaatatttcttt 15359
Query: 502 gcctcatgtctcaa 515
|||| ||| |||||
Sbjct: 15360 gccttatggctcaa 15373
>dbj|AP008219.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
fosmid clone:OSJNOa264G09
Length = 31687
Score = 228 bits (115), Expect = 2e-56
Identities = 355/434 (81%), Gaps = 1/434 (0%)
Strand = Plus / Plus
Query: 11 ggctgcagaatgcctccaagngnaccactacgtgtcctggcagtttgttgacctgccgag 70
||||||||||| || ||||| | |||||||||| |||||||| ||| |||||||||| ||
Sbjct: 16826 ggctgcagaatcccgccaagag-accactacgtatcctggcaatttattgacctgccaag 16884
Query: 71 gcaaccggcactagctgttggcttccagttcaacctgactaccaagcaaaccggagacga 130
|||||| || ||||||||||||||||| || || ||| | |||||| ||||| ||
Sbjct: 16885 gcaaccagctgccgctgttggcttccagtttaatctcactgcgaagcaacatggagatga 16944
Query: 131 tgagcacgtgagctttgtcagtgggaccataaactctgacaactatggtgatgagaagct 190
| || ||||||| ||||||||| || |||||||| ||||| | | |||||| |||||
Sbjct: 16945 caaacatgtgagctctgtcagtggaactataaactccgacaattttactgatgacaagct 17004
Query: 191 caagacattcagagggacagactccaacgtgctcaagattcagctgtttccccagatata 250
|||||||||||||||| ||| ||||| |||||||||||||| ||||||| || | |||
Sbjct: 17005 gaagacattcagagggagagattccaatgtgctcaagattcaattgtttcctcaaacata 17064
Query: 251 caacaaacttaataacctgaagctcttgcagccactgcttcaggacttcactccagggtc 310
|| ||| | | | || ||||||| |||| || ||| ||||||||||||||| ||| ||
Sbjct: 17065 catcaatcatcacaatttgaagcttctgcaacctctggttcaggacttcactcaaggttc 17124
Query: 311 taccttttcggatgtcacgagcttgaatgcttccctgcagaaccctaccgatggagtatt 370
||||||||| |||| | | ||||||||||||| |||| ||||||| |||||| || |
Sbjct: 17125 taccttttcaaatgttagaaacttgaatgcttccttgcaaaaccctatggatggaataat 17184
Query: 371 aaacactacactctacataagttatctttcagattacatcgtggagattagcaatgaaag 430
||| ||||||||||||||||| |||||||| | ||||| |||||||||||||| ||||
Sbjct: 17185 aaatactacactctacataagctatctttccaactacattgtggagattagcaacgaaaa 17244
Query: 431 tgtgttaggcccag 444
|||| |||||||||
Sbjct: 17245 tgtgctaggcccag 17258
Score = 99.6 bits (50), Expect = 1e-17
Identities = 59/62 (95%)
Strand = Plus / Plus
Query: 604 aggtgaggaagtttgtgatgtatacctggggccctagcaacttggatccaactgacagaa 663
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 18140 aggtgaggaagtttgtcatgtatacctggggccctagcaacttggatccaagtgatagaa 18199
Query: 664 gt 665
||
Sbjct: 18200 gt 18201
Score = 91.7 bits (46), Expect = 3e-15
Identities = 82/94 (87%)
Strand = Plus / Plus
Query: 516 tgtgaagctaggataaagaagctccgtaatgaggatacaagaatgctgaaaattctgagc 575
||||||||||||||||| ||||| || | |||||| | |||||||| ||||| |||||
Sbjct: 17968 tgtgaagctaggataaaaaagcttcgagacgaggattccagaatgctaaaaatactgagg 18027
Query: 576 aaaaggcgagctcaacagaattgggataaggtga 609
||||| || |||||||||||||||||||||||||
Sbjct: 18028 aaaagacgtgctcaacagaattgggataaggtga 18061
Score = 83.8 bits (42), Expect = 7e-13
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 442 cagtcagtataattgcgagcattggtggcctttatgccttcagtatagcaatatttctct 501
||||||||||| |||| || |||||||||||||||||||||||| | ||||||||||| |
Sbjct: 17498 cagtcagtatacttgcaagtattggtggcctttatgccttcagtgtggcaatatttcttt 17557
Query: 502 gcctcatgtctcaa 515
|||| ||| |||||
Sbjct: 17558 gccttatggctcaa 17571
>dbj|AP003610.2 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0402A09
Length = 141966
Score = 228 bits (115), Expect = 2e-56
Identities = 355/434 (81%), Gaps = 1/434 (0%)
Strand = Plus / Plus
Query: 11 ggctgcagaatgcctccaagngnaccactacgtgtcctggcagtttgttgacctgccgag 70
||||||||||| || ||||| | |||||||||| |||||||| ||| |||||||||| ||
Sbjct: 1756 ggctgcagaatcccgccaagag-accactacgtatcctggcaatttattgacctgccaag 1814
Query: 71 gcaaccggcactagctgttggcttccagttcaacctgactaccaagcaaaccggagacga 130
|||||| || ||||||||||||||||| || || ||| | |||||| ||||| ||
Sbjct: 1815 gcaaccagctgccgctgttggcttccagtttaatctcactgcgaagcaacatggagatga 1874
Query: 131 tgagcacgtgagctttgtcagtgggaccataaactctgacaactatggtgatgagaagct 190
| || ||||||| ||||||||| || |||||||| ||||| | | |||||| |||||
Sbjct: 1875 caaacatgtgagctctgtcagtggaactataaactccgacaattttactgatgacaagct 1934
Query: 191 caagacattcagagggacagactccaacgtgctcaagattcagctgtttccccagatata 250
|||||||||||||||| ||| ||||| |||||||||||||| ||||||| || | |||
Sbjct: 1935 gaagacattcagagggagagattccaatgtgctcaagattcaattgtttcctcaaacata 1994
Query: 251 caacaaacttaataacctgaagctcttgcagccactgcttcaggacttcactccagggtc 310
|| ||| | | | || ||||||| |||| || ||| ||||||||||||||| ||| ||
Sbjct: 1995 catcaatcatcacaatttgaagcttctgcaacctctggttcaggacttcactcaaggttc 2054
Query: 311 taccttttcggatgtcacgagcttgaatgcttccctgcagaaccctaccgatggagtatt 370
||||||||| |||| | | ||||||||||||| |||| ||||||| |||||| || |
Sbjct: 2055 taccttttcaaatgttagaaacttgaatgcttccttgcaaaaccctatggatggaataat 2114
Query: 371 aaacactacactctacataagttatctttcagattacatcgtggagattagcaatgaaag 430
||| ||||||||||||||||| |||||||| | ||||| |||||||||||||| ||||
Sbjct: 2115 aaatactacactctacataagctatctttccaactacattgtggagattagcaacgaaaa 2174
Query: 431 tgtgttaggcccag 444
|||| |||||||||
Sbjct: 2175 tgtgctaggcccag 2188
Score = 99.6 bits (50), Expect = 1e-17
Identities = 59/62 (95%)
Strand = Plus / Plus
Query: 604 aggtgaggaagtttgtgatgtatacctggggccctagcaacttggatccaactgacagaa 663
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 3070 aggtgaggaagtttgtcatgtatacctggggccctagcaacttggatccaagtgatagaa 3129
Query: 664 gt 665
||
Sbjct: 3130 gt 3131
Score = 91.7 bits (46), Expect = 3e-15
Identities = 82/94 (87%)
Strand = Plus / Plus
Query: 516 tgtgaagctaggataaagaagctccgtaatgaggatacaagaatgctgaaaattctgagc 575
||||||||||||||||| ||||| || | |||||| | |||||||| ||||| |||||
Sbjct: 2898 tgtgaagctaggataaaaaagcttcgagacgaggattccagaatgctaaaaatactgagg 2957
Query: 576 aaaaggcgagctcaacagaattgggataaggtga 609
||||| || |||||||||||||||||||||||||
Sbjct: 2958 aaaagacgtgctcaacagaattgggataaggtga 2991
Score = 83.8 bits (42), Expect = 7e-13
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 442 cagtcagtataattgcgagcattggtggcctttatgccttcagtatagcaatatttctct 501
||||||||||| |||| || |||||||||||||||||||||||| | ||||||||||| |
Sbjct: 2428 cagtcagtatacttgcaagtattggtggcctttatgccttcagtgtggcaatatttcttt 2487
Query: 502 gcctcatgtctcaa 515
|||| ||| |||||
Sbjct: 2488 gccttatggctcaa 2501
>emb|AL669982.10 | Mouse DNA sequence from clone RP23-297N24 on chromosome 4, complete
sequence
Length = 240125
Score = 40.1 bits (20), Expect = 9.1
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 273 ctcttgcagccactgcttca 292
||||||||||||||||||||
Sbjct: 165474 ctcttgcagccactgcttca 165455
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,065,677
Number of Sequences: 3902068
Number of extensions: 5065677
Number of successful extensions: 90618
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90497
Number of HSP's gapped (non-prelim): 103
length of query: 665
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 642
effective length of database: 17,143,297,704
effective search space: 11005997125968
effective search space used: 11005997125968
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)