ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags14a23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ARP2_PLAFA (P13824) Clustered-asparagine-rich protein (CARP) 33 1.0
2OSP_DROME (Q27421) Protein outspread 30 5.0

>ARP2_PLAFA (P13824) Clustered-asparagine-rich protein (CARP)|
          Length = 443

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +3

Query: 333 LNASLQNPT-DGVLNTTLYISYLSDYIVEISNESVLGPVSIIASI 464
           +N  + N T DGVLNT L+I  +  +I ++   S+LG V  I  I
Sbjct: 1   MNNEIVNSTIDGVLNTKLHIQNIPPHITDVHLRSLLGNVGFIKDI 45



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>OSP_DROME (Q27421) Protein outspread|
          Length = 1553

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 9/53 (16%)
 Frame = +1

Query: 163 TLTTMVMRSSRHSEGQTPTCS---------RFSCFPRYTTNLIT*SSCSHCFR 294
           T+TT V  +   S   TPT +         R +   ++T N+   S CSHCFR
Sbjct: 5   TITTTVPAAPSKSAPPTPTTTGAAGATTNARTADCRKFTPNIFNKSKCSHCFR 57


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,606,209
Number of Sequences: 219361
Number of extensions: 1707397
Number of successful extensions: 4121
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4120
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6427774254
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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