ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags18b16 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ431703.1|HVU431703 Hordeum vulgare vip gene for viviparous-1 protein, exons 1-6 Length = 3554 Score = 700 bits (353), Expect = 0.0 Identities = 366/370 (98%), Gaps = 4/370 (1%) Strand = Plus / Plus Query: 1 ctatttatgtgcatgcagccacttgcaaattttaatttctccttgattactctttgatta 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1953 ctatttatgtgcatgcagccacttgcaaattttaatttctccttgattactctttgatta 2012 Query: 61 ----gacaagatcagtctttggattgcaacttgcaactgtatgacctagctatgaatgga 116 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2013 attagacaagatcagtctttggattgcaacttgcaactgtatgacctagctatgaatgga 2072 Query: 117 tcttcctctctttctattgatcttggtgttgatttccttcttgatttctcggattttgca 176 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2073 tcttcctctctttctattgatcttggtgttgatttccttcttgatttctcggattttgca 2132 Query: 177 agtgtatctatccatggatcttcttgtctttccgctgatcgatcggttgcgactaaaaag 236 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2133 agtgtatctatccatggatcttcttgtctttccgctgatcgatcggttgcgactaaaaag 2192 Query: 237 tgtctcttcttccatggatggtttcagaaggaagcggagactcacctgccggagctcaag 296 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2193 tgtctcttcttccatggatggtttcagaaggaagcggagactcacctgccggagctcaag 2252 Query: 297 acgggggacggcatctcgatccccattgaggacatcggcacatctcaggtgtggagcatg 356 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2253 acgggggacggcatctcgatccccattgaggacatcggcacatctcaggtgtggagcatg 2312 Query: 357 cggtaccggt 366 |||||||||| Sbjct: 2313 cggtaccggt 2322 Score = 155 bits (78), Expect = 2e-34 Identities = 78/78 (100%) Strand = Plus / Plus Query: 411 ggtgacttcgttcgctcgaatgagctgcaggagggtgatttcatcgtgctctactccgat 470 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3002 ggtgacttcgttcgctcgaatgagctgcaggagggtgatttcatcgtgctctactccgat 3061 Query: 471 gtaaagtcaggcaaatat 488 |||||||||||||||||| Sbjct: 3062 gtaaagtcaggcaaatat 3079 Score = 99.6 bits (50), Expect = 9e-18 Identities = 50/50 (100%) Strand = Plus / Plus Query: 366 ttttggcccaacaacaagagcagaatgtatcttctagagaacactggtga 415 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2858 ttttggcccaacaacaagagcagaatgtatcttctagagaacactggtga 2907 Score = 63.9 bits (32), Expect = 5e-07 Identities = 32/32 (100%) Strand = Plus / Plus Query: 489 ctgatacggggcgtgaaggtaagagccgcaca 520 |||||||||||||||||||||||||||||||| Sbjct: 3369 ctgatacggggcgtgaaggtaagagccgcaca 3400
>emb|AJ400713.1|TAE400713 Triticum aestivum vp1B gene for VIVIPAROUS1, exons 1-6 Length = 4034 Score = 490 bits (247), Expect = e-135 Identities = 332/357 (92%), Gaps = 10/357 (2%) Strand = Plus / Plus Query: 10 tgcatgcagccacttgcaaattttaatttctccttgattactctttgattagacaagatc 69 |||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||| Sbjct: 1940 tgcatgcatccacttgcaaattttagtttctccttgattcctctttgattagacaagatc 1999 Query: 70 agtctttggattgcaacttgcaactgtatgacctagctatgaatggatcttcctctcttt 129 |||||||||||| || ||||||||||||||||||||||||||||||| ||||| Sbjct: 2000 tatctttggattgc-----gc--ctgtatgacctagctatgaatggatcttcctttcttt 2052 Query: 130 ctattgatcttggtgttgatttccttcttgatttctcggattttgcaagtgtatctatcc 189 | ||||| ||||||||||| |||||||||||||||||| |||||||||||||||| Sbjct: 2053 tctgtaatctttgtgttgatttc-ttcttgatttctcggatt--gcaagtgtatctatcc 2109 Query: 190 atggatcttcttgtctttccgctgatcgatcggttgcgactaaaaagtgtctcttcttcc 249 |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 2110 atggatcttcctgtctttctgctgatcgatcggttgcgactaaaaagtgtctcttcttcc 2169 Query: 250 atggatggtttcagaaggaagcggagactcacctgccggagctcaagacgggggacggca 309 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2170 atggatggtttcagaaggaagcggagactcacctgccggagctcaagacgggggacggca 2229 Query: 310 tctcgatccccattgaggacatcggcacatctcaggtgtggagcatgcggtaccggt 366 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 2230 tctcgatccccattgaggacatcggcacatctcaggtctggagcatgcggtaccggt 2286 Score = 107 bits (54), Expect = 4e-20 Identities = 72/78 (92%) Strand = Plus / Plus Query: 411 ggtgacttcgttcgctcgaatgagctgcaggagggtgatttcatcgtgctctactccgat 470 |||||||| ||||| || |||||||||||||||||||||||||||||||| ||||| ||| Sbjct: 3053 ggtgactttgttcggtccaatgagctgcaggagggtgatttcatcgtgctttactctgat 3112 Query: 471 gtaaagtcaggcaaatat 488 || ||||||||||||||| Sbjct: 3113 gtcaagtcaggcaaatat 3130 Score = 99.6 bits (50), Expect = 9e-18 Identities = 50/50 (100%) Strand = Plus / Plus Query: 366 ttttggcccaacaacaagagcagaatgtatcttctagagaacactggtga 415 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2907 ttttggcccaacaacaagagcagaatgtatcttctagagaacactggtga 2956 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Plus Query: 489 ctgatacggggcgtgaaggtaagagc 514 |||||||| ||||||||||||||||| Sbjct: 3647 ctgatacgcggcgtgaaggtaagagc 3672
>emb|AJ400714.1|TAE400714 Triticum aestivum vp1D gene for VIVIPAROUS1, exons 1-6 Length = 4230 Score = 454 bits (229), Expect = e-124 Identities = 331/362 (91%), Gaps = 16/362 (4%) Strand = Plus / Plus Query: 10 tgcatgcagccacttgcaaattttaatttctccttgatta-----ctctttgattagaca 64 |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 1963 tgcatgcatccacttgcaaattttaatttctccttgattatattcctctttgattagaca 2022 Query: 65 agatcagtctttggattgcaacttgcaactgtatgacctagctatgaatggatcttcctc 124 || || ||||||||||||| || ||||||||||||||||||||||||||||| Sbjct: 2023 aggtccatctttggattgcacct-------gtatgacctagctatgaatggatcttcctt 2075 Query: 125 tctttctattgatcttggtgttgatttccttcttgatttctcggattttgcaagtgtatc 184 ||||||| | ||||| ||||||||||| ||||||||||||| |||| |||||| |||| Sbjct: 2076 tctttctgta-atctttgtgttgatttc-ttcttgatttctcagatt--gcaagtttatc 2131 Query: 185 tatccatggatcttcttgtctttccgctgatcgatcggttgcgactaaaaagtgtctctt 244 |||||||||||||||||||||||| | |||||||||||||||| |||||| ||||||||| Sbjct: 2132 tatccatggatcttcttgtctttctgttgatcgatcggttgcggctaaaacgtgtctctt 2191 Query: 245 cttccatggatggtttcagaaggaagcggagactcacctgccggagctcaagacggggga 304 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2192 cttccatggatggtttcagaaggaagcggagactcacctgccggagctcaagacggggga 2251 Query: 305 cggcatctcgatccccattgaggacatcggcacatctcaggtgtggagcatgcggtaccg 364 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2252 cggcatctcgatccccattgaggacatcggcacatctcaggtgtggagcatgcggtaccg 2311 Query: 365 gt 366 || Sbjct: 2312 gt 2313 Score = 101 bits (51), Expect = 2e-18 Identities = 69/75 (92%) Strand = Plus / Plus Query: 414 gacttcgttcgctcgaatgagctgcaggagggtgatttcatcgtgctctactccgatgta 473 ||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct: 3158 gactttgttcggtcgaatgagctgcaggagggtgatttcatcgtgctttactctgatgtc 3217 Query: 474 aagtcaggcaaatat 488 ||||| ||||||||| Sbjct: 3218 aagtcgggcaaatat 3232 Score = 91.7 bits (46), Expect = 2e-15 Identities = 49/50 (98%) Strand = Plus / Plus Query: 366 ttttggcccaacaacaagagcagaatgtatcttctagagaacactggtga 415 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 3009 ttttggcccaacaacaagagcagaatgtatcttctggagaacactggtga 3058 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Plus Query: 489 ctgatacggggcgtgaaggtaagagc 514 |||||||| ||||||||||||||||| Sbjct: 3853 ctgatacgcggcgtgaaggtaagagc 3878
>emb|AJ400712.1|TAE400712 Triticum aestivum vp1A gene for VIVIPAROUS1, exons 1-6 Length = 4349 Score = 430 bits (217), Expect = e-117 Identities = 336/371 (90%), Gaps = 16/371 (4%) Strand = Plus / Plus Query: 1 ctatttatgtgcatgcagccacttgcaaattttaatttctccttgattactctttgatta 60 |||| ||| |||||||| |||||||||||||||||||||||||||||| ||||||||||| Sbjct: 1980 ctatatatatgcatgcatccacttgcaaattttaatttctccttgattcctctttgatta 2039 Query: 61 gacaagatcagtctttggattgcaacttgcaactgtatgacctagctatgaatggatctt 120 ||||||||| ||||||||||||| || ||||||||||||| |||||||||||| Sbjct: 2040 gacaagatccatctttggattgcacct-------gtatgacctagctgtgaatggatctt 2092 Query: 121 cctctctttctattgatcttggtgttgatttccttcttgatttctcggattttgcaagtg 180 ||| ||||||| ||||| ||||||||||| |||||||||||||||||| ||||||| Sbjct: 2093 cctttctttctgca-atctttgtgttgatttc-ttcttgatttctcggatt--gcaagtg 2148 Query: 181 tatctatccatggatcttcttgtctttc----cgctgatcgatcggttg-cgactaaaaa 235 ||||||||||||||| ||| ||||| || |||||||||||||||| ||||||||| Sbjct: 2149 tatctatccatggatgttcctgtctgtctgctagctgatcgatcggttgccgactaaaac 2208 Query: 236 gtgtctcttcttccatggatggtttcagaaggaagcggagactcacctgccggagctcaa 295 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2209 gcgtctcttcttccatggatggtttcagaaggaagcggagactcacctgccggagctcaa 2268 Query: 296 gacgggggacggcatctcgatccccattgaggacatcggcacatctcaggtgtggagcat 355 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2269 gacgggggacggcatctcgatccccattgaggacatcggcacatctcaggtgtggagcat 2328 Query: 356 gcggtaccggt 366 ||||||||||| Sbjct: 2329 gcggtaccggt 2339 Score = 107 bits (54), Expect = 4e-20 Identities = 72/78 (92%) Strand = Plus / Plus Query: 411 ggtgacttcgttcgctcgaatgagctgcaggagggtgatttcatcgtgctctactccgat 470 |||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct: 3068 ggtgactttgttcggtcgaatgagctgcaggagggtgatttcatcgtgctttactctgat 3127 Query: 471 gtaaagtcaggcaaatat 488 || ||||| ||||||||| Sbjct: 3128 gtcaagtcgggcaaatat 3145 Score = 99.6 bits (50), Expect = 9e-18 Identities = 50/50 (100%) Strand = Plus / Plus Query: 366 ttttggcccaacaacaagagcagaatgtatcttctagagaacactggtga 415 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2922 ttttggcccaacaacaagagcagaatgtatcttctagagaacactggtga 2971
>gb|AY150678.1| Hordeum vulgare subsp. vulgare VP1 (VP1) mRNA, partial cds Length = 1181 Score = 426 bits (215), Expect = e-116 Identities = 215/215 (100%) Strand = Plus / Plus Query: 264 aaggaagcggagactcacctgccggagctcaagacgggggacggcatctcgatccccatt 323 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 967 aaggaagcggagactcacctgccggagctcaagacgggggacggcatctcgatccccatt 1026 Query: 324 gaggacatcggcacatctcaggtgtggagcatgcggtaccggttttggcccaacaacaag 383 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1027 gaggacatcggcacatctcaggtgtggagcatgcggtaccggttttggcccaacaacaag 1086 Query: 384 agcagaatgtatcttctagagaacactggtgacttcgttcgctcgaatgagctgcaggag 443 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1087 agcagaatgtatcttctagagaacactggtgacttcgttcgctcgaatgagctgcaggag 1146 Query: 444 ggtgatttcatcgtgctctactccgatgtaaagtc 478 ||||||||||||||||||||||||||||||||||| Sbjct: 1147 ggtgatttcatcgtgctctactccgatgtaaagtc 1181
>emb|Y09939.1|HVVIVIPA1 H.vulgare mRNA for transcription factor vp1 Length = 265 Score = 422 bits (213), Expect = e-115 Identities = 213/213 (100%) Strand = Plus / Plus Query: 264 aaggaagcggagactcacctgccggagctcaagacgggggacggcatctcgatccccatt 323 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 53 aaggaagcggagactcacctgccggagctcaagacgggggacggcatctcgatccccatt 112 Query: 324 gaggacatcggcacatctcaggtgtggagcatgcggtaccggttttggcccaacaacaag 383 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 113 gaggacatcggcacatctcaggtgtggagcatgcggtaccggttttggcccaacaacaag 172 Query: 384 agcagaatgtatcttctagagaacactggtgacttcgttcgctcgaatgagctgcaggag 443 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 173 agcagaatgtatcttctagagaacactggtgacttcgttcgctcgaatgagctgcaggag 232 Query: 444 ggtgatttcatcgtgctctactccgatgtaaag 476 ||||||||||||||||||||||||||||||||| Sbjct: 233 ggtgatttcatcgtgctctactccgatgtaaag 265
>dbj|AB047554.1| Triticum aestivum VP1 mRNA for transcription factor VP-1 homologue, complete cds Length = 2064 Score = 420 bits (212), Expect = e-114 Identities = 239/248 (96%) Strand = Plus / Plus Query: 267 gaagcggagactcacctgccggagctcaagacgggggacggcatctcgatccccattgag 326 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1651 gaagcggagactcacctgccggagctcaagacgggggacggcatctcgatccccattgag 1710 Query: 327 gacatcggcacatctcaggtgtggagcatgcggtaccggttttggcccaacaacaagagc 386 |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct: 1711 gacatcggcacatctcaggtctggagcatgcggtaccgattttggcccaacaacaagagc 1770 Query: 387 agaatgtatcttctagagaacactggtgacttcgttcgctcgaatgagctgcaggagggt 446 |||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||| Sbjct: 1771 agaatgtatcttctagagaacactggtgactttgttcggtccaatgagctgcaggagggt 1830 Query: 447 gatttcatcgtgctctactccgatgtaaagtcaggcaaatatctgatacggggcgtgaag 506 |||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||| Sbjct: 1831 gatttcatcgtgctttactctgatgtcaagtcaggcaaatatctgatacgcggcgtgaag 1890 Query: 507 gtaagagc 514 |||||||| Sbjct: 1891 gtaagagc 1898
>gb|DQ416754.1| Avena fatua clone 2 viviparous 1 mRNA, partial cds Length = 1279 Score = 311 bits (157), Expect = 1e-81 Identities = 226/249 (90%) Strand = Plus / Plus Query: 264 aaggaagcggagactcacctgccggagctcaagacgggggacggcatctcgatccccatt 323 |||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||| Sbjct: 857 aaggaagcggagacgcacctgccggagctcaagacgagggacggcatctccatccccatg 916 Query: 324 gaggacatcggcacatctcaggtgtggagcatgcggtaccggttttggcccaacaacaag 383 |||||||||||||| |||| ||| |||||||||||||||||||||||||| ||||||||| Sbjct: 917 gaggacatcggcacctctcgggtctggagcatgcggtaccggttttggcctaacaacaag 976 Query: 384 agcagaatgtatcttctagagaacactggtgacttcgttcgctcgaatgagctgcaggag 443 |||||||||||||| || ||||||||||| ||||| |||||||| || |||||||||||| Sbjct: 977 agcagaatgtatctccttgagaacactggggactttgttcgctcaaacgagctgcaggag 1036 Query: 444 ggtgatttcatcgtgctctactccgatgtaaagtcaggcaaatatctgatacggggcgtg 503 || || ||||||||| | ||||| ||||| ||||| ||||||||||||||||| || ||| Sbjct: 1037 ggcgacttcatcgtgatttactcagatgtcaagtcgggcaaatatctgatacgtggtgtg 1096 Query: 504 aaggtaaga 512 ||||||||| Sbjct: 1097 aaggtaaga 1105
>gb|DQ416753.1| Avena fatua clone 1 viviparous 1 mRNA, partial cds Length = 1282 Score = 311 bits (157), Expect = 1e-81 Identities = 226/249 (90%) Strand = Plus / Plus Query: 264 aaggaagcggagactcacctgccggagctcaagacgggggacggcatctcgatccccatt 323 |||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||| Sbjct: 856 aaggaagcggagacgcacctgccggagctcaagacgagggacggcatctccatccccatg 915 Query: 324 gaggacatcggcacatctcaggtgtggagcatgcggtaccggttttggcccaacaacaag 383 |||||||||||||| |||| ||| |||||||||||||||||||||||||| ||||||||| Sbjct: 916 gaggacatcggcacctctcgggtctggagcatgcggtaccggttttggcctaacaacaag 975 Query: 384 agcagaatgtatcttctagagaacactggtgacttcgttcgctcgaatgagctgcaggag 443 |||||||||||||| || ||||||||||| ||||| |||||||| || |||||||||||| Sbjct: 976 agcagaatgtatctccttgagaacactggggactttgttcgctcaaacgagctgcaggag 1035 Query: 444 ggtgatttcatcgtgctctactccgatgtaaagtcaggcaaatatctgatacggggcgtg 503 || || ||||||||| | ||||| ||||| ||||| ||||||||||||||||| || ||| Sbjct: 1036 ggcgacttcatcgtgatttactcagatgtcaagtcgggcaaatatctgatacgtggtgtg 1095 Query: 504 aaggtaaga 512 ||||||||| Sbjct: 1096 aaggtaaga 1104
>emb|AJ001140.1|AFJ001140 Avena fatua mRNA for VIVIPAROUS 1 homologue transcription factor Length = 2336 Score = 305 bits (154), Expect = 8e-80 Identities = 223/246 (90%) Strand = Plus / Plus Query: 267 gaagcggagactcacctgccggagctcaagacgggggacggcatctcgatccccattgag 326 ||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||| ||| Sbjct: 1623 gaagcggagacgcacctgccggagctcaagacgagggacggcatctccatccccatggag 1682 Query: 327 gacatcggcacatctcaggtgtggagcatgcggtaccggttttggcccaacaacaagagc 386 ||||||||||| |||| ||| |||||||||||||||||||||||||| |||||||||||| Sbjct: 1683 gacatcggcacctctcgggtctggagcatgcggtaccggttttggcctaacaacaagagc 1742 Query: 387 agaatgtatcttctagagaacactggtgacttcgttcgctcgaatgagctgcaggagggt 446 ||||||||||| || ||||||||||| ||||| |||||||| || |||||||||||||| Sbjct: 1743 agaatgtatctccttgagaacactggggactttgttcgctcaaacgagctgcaggagggc 1802 Query: 447 gatttcatcgtgctctactccgatgtaaagtcaggcaaatatctgatacggggcgtgaag 506 || ||||||||| | ||||| ||||| ||||| ||||||||||||||||| || |||||| Sbjct: 1803 gacttcatcgtgatttactcagatgtcaagtcgggcaaatatctgatacgtggtgtgaag 1862 Query: 507 gtaaga 512 |||||| Sbjct: 1863 gtaaga 1868
>gb|DQ416763.1| Avena fatua clone 11 viviparous 1 mRNA, partial cds Length = 1332 Score = 303 bits (153), Expect = 3e-79 Identities = 225/249 (90%) Strand = Plus / Plus Query: 264 aaggaagcggagactcacctgccggagctcaagacgggggacggcatctcgatccccatt 323 |||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||| Sbjct: 879 aaggaagcggagacgcacctgccggagctcaagacgagggacggcatctccatccccatg 938 Query: 324 gaggacatcggcacatctcaggtgtggagcatgcggtaccggttttggcccaacaacaag 383 |||||||||||||| |||| ||| |||||||||||||||||||||||||| ||||||||| Sbjct: 939 gaggacatcggcacctctcgggtctggagcatgcggtaccggttttggcctaacaacaag 998 Query: 384 agcagaatgtatcttctagagaacactggtgacttcgttcgctcgaatgagctgcaggag 443 ||||||||||||| || ||||||||||| ||||| |||||||| || |||||||||||| Sbjct: 999 cgcagaatgtatctccttgagaacactggggactttgttcgctcaaacgagctgcaggag 1058 Query: 444 ggtgatttcatcgtgctctactccgatgtaaagtcaggcaaatatctgatacggggcgtg 503 || || ||||||||| | ||||| ||||| ||||| ||||||||||||||||| || ||| Sbjct: 1059 ggcgacttcatcgtgatttactcagatgtcaagtcgggcaaatatctgatacgtggtgtg 1118 Query: 504 aaggtaaga 512 ||||||||| Sbjct: 1119 aaggtaaga 1127
>gb|DQ416757.1| Avena fatua clone 5 truncated viviparous 1 mRNA, partial cds Length = 1288 Score = 301 bits (152), Expect = 1e-78 Identities = 230/256 (89%) Strand = Plus / Plus Query: 257 gtttcagaaggaagcggagactcacctgccggagctcaagacgggggacggcatctcgat 316 ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| || Sbjct: 860 gtttcagaaggaagcggagacgcacctgccggagctcaagacgagggacggcatctccat 919 Query: 317 ccccattgaggacatcggcacatctcaggtgtggagcatgcggtaccggttttggcccaa 376 |||||| |||||||||||||| |||| ||| |||||||||||||||||||||||||| || Sbjct: 920 ccccatggaggacatcggcacctctcgggtctggagcatgcggtaccggttttggcctaa 979 Query: 377 caacaagagcagaatgtatcttctagagaacactggtgacttcgttcgctcgaatgagct 436 ||||||||||||||||||||| || ||||||||||| ||||| ||||| || || ||| | Sbjct: 980 caacaagagcagaatgtatctccttgagaacactggggactttgttcggtcaaacgagtt 1039 Query: 437 gcaggagggtgatttcatcgtgctctactccgatgtaaagtcaggcaaatatctgatacg 496 ||||||||| || |||||||| | ||||| ||||| ||||| ||||||||||||||||| Sbjct: 1040 gcaggagggcgacttcatcgtaatttactcagatgtcaagtcgggcaaatatctgatacg 1099 Query: 497 gggcgtgaaggtaaga 512 || |||||||||||| Sbjct: 1100 tggtgtgaaggtaaga 1115
>gb|DQ416762.1| Avena fatua clone 10 viviparous 1 mRNA, partial cds Length = 1335 Score = 287 bits (145), Expect = 2e-74 Identities = 223/249 (89%) Strand = Plus / Plus Query: 264 aaggaagcggagactcacctgccggagctcaagacgggggacggcatctcgatccccatt 323 |||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||| Sbjct: 879 aaggaagcggagacgcacctgccggagctcaagacgagggacggcatctccatccccatg 938 Query: 324 gaggacatcggcacatctcaggtgtggagcatgcggtaccggttttggcccaacaacaag 383 |||||||||||||| |||| ||| |||||||||||||||||||||||||| ||||||||| Sbjct: 939 gaggacatcggcacctctcgggtctggagcatgcggtaccggttttggcctaacaacaag 998 Query: 384 agcagaatgtatcttctagagaacactggtgacttcgttcgctcgaatgagctgcaggag 443 |||||||||||||| || ||||||||||| ||||| ||||| || || ||| |||||||| Sbjct: 999 agcagaatgtatctccttgagaacactggggactttgttcggtcaaacgagttgcaggag 1058 Query: 444 ggtgatttcatcgtgctctactccgatgtaaagtcaggcaaatatctgatacggggcgtg 503 || || |||||||| | ||||| ||||| ||||| ||||||||||||||||| || ||| Sbjct: 1059 ggcgacttcatcgtaatttactcagatgtcaagtcgggcaaatatctgatacgtggtgtg 1118 Query: 504 aaggtaaga 512 ||||||||| Sbjct: 1119 aaggtaaga 1127
>gb|DQ416758.1| Avena fatua clone 6 viviparous 1 mRNA, partial cds Length = 1285 Score = 287 bits (145), Expect = 2e-74 Identities = 223/249 (89%) Strand = Plus / Plus Query: 264 aaggaagcggagactcacctgccggagctcaagacgggggacggcatctcgatccccatt 323 |||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||| Sbjct: 857 aaggaagcggagacgcacctgccggagctcaagacgagggacggcatctccatccccatg 916 Query: 324 gaggacatcggcacatctcaggtgtggagcatgcggtaccggttttggcccaacaacaag 383 |||||||||||||| |||| ||| |||||||||||||||||||||||||| ||||||||| Sbjct: 917 gaggacatcggcacctctcgggtctggagcatgcggtaccggttttggcctaacaacaag 976 Query: 384 agcagaatgtatcttctagagaacactggtgacttcgttcgctcgaatgagctgcaggag 443 |||||||||||||| || ||||||||||| ||||| ||||| || || ||| |||||||| Sbjct: 977 agcagaatgtatctccttgagaacactggggactttgttcggtcaaacgagttgcaggag 1036 Query: 444 ggtgatttcatcgtgctctactccgatgtaaagtcaggcaaatatctgatacggggcgtg 503 || || |||||||| | ||||| ||||| ||||| ||||||||||||||||| || ||| Sbjct: 1037 ggcgacttcatcgtaatttactcagatgtcaagtcgggcaaatatctgatacgtggtgtg 1096 Query: 504 aaggtaaga 512 ||||||||| Sbjct: 1097 aaggtaaga 1105
>gb|DQ416756.1| Avena fatua clone 4 viviparous 1 mRNA, partial cds Length = 1287 Score = 287 bits (145), Expect = 2e-74 Identities = 223/249 (89%) Strand = Plus / Plus Query: 264 aaggaagcggagactcacctgccggagctcaagacgggggacggcatctcgatccccatt 323 |||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||| Sbjct: 858 aaggaagcggagacgcacctgccggagctcaagacgagggacggcatctccatccccatg 917 Query: 324 gaggacatcggcacatctcaggtgtggagcatgcggtaccggttttggcccaacaacaag 383 |||||||||||||| |||| ||| |||||||||||||||||||||||||| ||||||||| Sbjct: 918 gaggacatcggcacctctcgggtctggagcatgcggtaccggttttggcctaacaacaag 977 Query: 384 agcagaatgtatcttctagagaacactggtgacttcgttcgctcgaatgagctgcaggag 443 |||||||||||||| || ||||||||||| ||||| ||||| || || ||| |||||||| Sbjct: 978 agcagaatgtatctccttgagaacactggggactttgttcggtcaaacgagttgcaggag 1037 Query: 444 ggtgatttcatcgtgctctactccgatgtaaagtcaggcaaatatctgatacggggcgtg 503 || || |||||||| | ||||| ||||| ||||| ||||||||||||||||| || ||| Sbjct: 1038 ggcgacttcatcgtaatttactcagatgtcaagtcgggcaaatatctgatacgtggtgtg 1097 Query: 504 aaggtaaga 512 ||||||||| Sbjct: 1098 aaggtaaga 1106
>gb|DQ416759.1| Avena fatua clone 7 viviparous 1 mRNA, partial cds Length = 1283 Score = 281 bits (142), Expect = 1e-72 Identities = 220/246 (89%) Strand = Plus / Plus Query: 267 gaagcggagactcacctgccggagctcaagacgggggacggcatctcgatccccattgag 326 ||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||| ||| Sbjct: 858 gaagcggagacgcacctgccggagctcaagacgagggacggcatctccatccccatggag 917 Query: 327 gacatcggcacatctcaggtgtggagcatgcggtaccggttttggcccaacaacaagagc 386 ||||||||||| |||| ||| |||||||||||||||||||||||||| |||||||||||| Sbjct: 918 gacatcggcacctctcgggtctggagcatgcggtaccggttttggcctaacaacaagagc 977 Query: 387 agaatgtatcttctagagaacactggtgacttcgttcgctcgaatgagctgcaggagggt 446 ||||||||||| || ||||||||||| ||||| ||||| || || ||| |||||||||| Sbjct: 978 agaatgtatctccttgagaacactggggactttgttcggtcaaacgagttgcaggagggc 1037 Query: 447 gatttcatcgtgctctactccgatgtaaagtcaggcaaatatctgatacggggcgtgaag 506 || |||||||| | ||||| ||||| ||||| ||||||||||||||||| || |||||| Sbjct: 1038 gacttcatcgtaatttactcagatgtcaagtcgggcaaatatctgatacgtggtgtgaag 1097 Query: 507 gtaaga 512 |||||| Sbjct: 1098 gtaaga 1103
>gb|DQ416755.1| Avena fatua clone 3 viviparous 1 mRNA, partial cds Length = 1282 Score = 281 bits (142), Expect = 1e-72 Identities = 220/246 (89%) Strand = Plus / Plus Query: 267 gaagcggagactcacctgccggagctcaagacgggggacggcatctcgatccccattgag 326 ||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||| ||| Sbjct: 857 gaagcggagacgcacctgccggagctcaagacgagggacggcatctccatccccatggag 916 Query: 327 gacatcggcacatctcaggtgtggagcatgcggtaccggttttggcccaacaacaagagc 386 ||||||||||| |||| ||| |||||||||||||||||||||||||| |||||||||||| Sbjct: 917 gacatcggcacctctcgggtctggagcatgcggtaccggttttggcctaacaacaagagc 976 Query: 387 agaatgtatcttctagagaacactggtgacttcgttcgctcgaatgagctgcaggagggt 446 ||||||||||| || ||||||||||| ||||| ||||| || || ||| |||||||||| Sbjct: 977 agaatgtatctccttgagaacactggggactttgttcggtcaaacgagttgcaggagggc 1036 Query: 447 gatttcatcgtgctctactccgatgtaaagtcaggcaaatatctgatacggggcgtgaag 506 || |||||||| | ||||| ||||| ||||| ||||||||||||||||| || |||||| Sbjct: 1037 gacttcatcgtaatttactcagatgtcaagtcgggcaaatatctgatacgtggtgtgaag 1096 Query: 507 gtaaga 512 |||||| Sbjct: 1097 gtaaga 1102
>gb|DQ416764.1| Avena fatua clone 12 viviparous 1 mRNA, partial cds Length = 1193 Score = 280 bits (141), Expect = 4e-72 Identities = 222/249 (89%) Strand = Plus / Plus Query: 264 aaggaagcggagactcacctgccggagctcaagacgggggacggcatctcgatccccatt 323 |||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||| Sbjct: 879 aaggaagcggagacgcacctgccggagctcaagacgagggacggcatctccatccccatg 938 Query: 324 gaggacatcggcacatctcaggtgtggagcatgcggtaccggttttggcccaacaacaag 383 |||||||||||||| |||| ||| |||||||||||||||||||||||||| ||||||||| Sbjct: 939 gaggacatcggcacctctcgggtctggagcatgcggtaccggttttggcctaacaacaag 998 Query: 384 agcagaatgtatcttctagagaacactggtgacttcgttcgctcgaatgagctgcaggag 443 |||||||||||||| || ||||||||||| ||||| | ||| || || ||| |||||||| Sbjct: 999 agcagaatgtatctccttgagaacactggggactttgctcggtcaaacgagttgcaggag 1058 Query: 444 ggtgatttcatcgtgctctactccgatgtaaagtcaggcaaatatctgatacggggcgtg 503 || || |||||||| | ||||| ||||| ||||| ||||||||||||||||| || ||| Sbjct: 1059 ggcgacttcatcgtaatttactcagatgtcaagtcgggcaaatatctgatacgtggtgtg 1118 Query: 504 aaggtaaga 512 ||||||||| Sbjct: 1119 aaggtaaga 1127
>gb|DQ416761.1| Avena fatua clone 9 viviparous 1 mRNA, partial cds Length = 1335 Score = 280 bits (141), Expect = 4e-72 Identities = 222/249 (89%) Strand = Plus / Plus Query: 264 aaggaagcggagactcacctgccggagctcaagacgggggacggcatctcgatccccatt 323 |||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||| Sbjct: 879 aaggaagcggagacgcacctgccggagctcaagacgagggacggcatctccatccccatg 938 Query: 324 gaggacatcggcacatctcaggtgtggagcatgcggtaccggttttggcccaacaacaag 383 |||||||||||||| |||| ||| |||||||||||||||||||||||||| ||||||||| Sbjct: 939 gaggacatcggcacctctcgggtctggagcatgcggtaccggttttggcctaacaacaag 998 Query: 384 agcagaatgtatcttctagagaacactggtgacttcgttcgctcgaatgagctgcaggag 443 |||||||||||||| || ||||||||||| ||||| ||||| || || ||| |||||||| Sbjct: 999 agcagaatgtatctccttgagaacactggggactttgttcggtcaaacgagttgcaggag 1058 Query: 444 ggtgatttcatcgtgctctactccgatgtaaagtcaggcaaatatctgatacggggcgtg 503 || || |||||||| | ||||| ||||| ||||| |||||| |||||||||| || ||| Sbjct: 1059 ggcgacttcatcgtaatttactcagatgtcaagtcgggcaaaaatctgatacgtggtgtg 1118 Query: 504 aaggtaaga 512 ||||||||| Sbjct: 1119 aaggtaaga 1127
>gb|DQ416760.1| Avena fatua clone 8 viviparous 1 mRNA, partial cds Length = 1285 Score = 280 bits (141), Expect = 4e-72 Identities = 222/249 (89%) Strand = Plus / Plus Query: 264 aaggaagcggagactcacctgccggagctcaagacgggggacggcatctcgatccccatt 323 |||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||| Sbjct: 857 aaggaagcggagacgcacctgccggagctcaagacgagggacggcatctccatccccatg 916 Query: 324 gaggacatcggcacatctcaggtgtggagcatgcggtaccggttttggcccaacaacaag 383 |||||||||||||| |||| ||| |||||||||||||||||||||||||| ||||||||| Sbjct: 917 gaggacatcggcacctctcgggtctggagcatgcggtaccggttttggcctaacaacaag 976 Query: 384 agcagaatgtatcttctagagaacactggtgacttcgttcgctcgaatgagctgcaggag 443 |||||||||||||| || ||||||||||| ||||| ||||| || || ||| |||||||| Sbjct: 977 agcagaatgtatctccttgagaacactggagactttgttcggtcaaacgagttgcaggag 1036 Query: 444 ggtgatttcatcgtgctctactccgatgtaaagtcaggcaaatatctgatacggggcgtg 503 || || |||||||| | ||||| ||||| ||||| ||||||||| ||||||| || ||| Sbjct: 1037 ggcgacttcatcgtaatttactcagatgtcaagtcgggcaaatatttgatacgtggtgtg 1096 Query: 504 aaggtaaga 512 ||||||||| Sbjct: 1097 aaggtaaga 1105
>gb|M60214.1|MZEREGPRO Zea mays viviparous-1 mRNA, complete cds Length = 2456 Score = 254 bits (128), Expect = 3e-64 Identities = 218/248 (87%) Strand = Plus / Plus Query: 264 aaggaagcggagactcacctgccggagctcaagacgggggacggcatctcgatccccatt 323 |||||||||||| ||||||||||||||| |||||| |||| |||||||| |||||||| Sbjct: 1681 aaggaagcggaggttcacctgccggagctgaagacgagggatggcatctccatccccatg 1740 Query: 324 gaggacatcggcacatctcaggtgtggagcatgcggtaccggttttggcccaacaacaag 383 ||||||||||| || || | ||||||| |||||||||| |||||||||||||||||||| Sbjct: 1741 gaggacatcggaacgtcgcgcgtgtggaacatgcggtacaggttttggcccaacaacaag 1800 Query: 384 agcagaatgtatcttctagagaacactggtgacttcgttcgctcgaatgagctgcaggag 443 |||||||||||||| || || ||||| || || || ||||| || || ||||| |||||| Sbjct: 1801 agcagaatgtatctgctggaaaacacaggggaatttgttcgttccaacgagcttcaggag 1860 Query: 444 ggtgatttcatcgtgctctactccgatgtaaagtcaggcaaatatctgatacggggcgtg 503 || |||||||| ||| ||||||||||||| ||||| |||||||||||||||||||||||| Sbjct: 1861 ggggatttcatagtgatctactccgatgtcaagtcgggcaaatatctgatacggggcgtg 1920 Query: 504 aaggtaag 511 |||||||| Sbjct: 1921 aaggtaag 1928
>ref|NM_189891.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2187 Score = 248 bits (125), Expect = 2e-62 Identities = 215/245 (87%) Strand = Plus / Plus Query: 264 aaggaagcggagactcacctgccggagctcaagacgggggacggcatctcgatccccatt 323 |||||||| ||| ||||||||||||||| |||||| |||| || |||| |||||||| Sbjct: 1669 aaggaagcagaggttcacctgccggagctgaagacgagggatggtgtctccatccccatg 1728 Query: 324 gaggacatcggcacatctcaggtgtggagcatgcggtaccggttttggcccaacaacaag 383 || |||||||| || ||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1729 gaagacatcgggacgtctcaggtgtggaacatgcggtaccggttttggcccaacaacaaa 1788 Query: 384 agcagaatgtatcttctagagaacactggtgacttcgttcgctcgaatgagctgcaggag 443 ||||| ||||||||||| || ||||| ||||| || ||||| || || |||||||||||| Sbjct: 1789 agcaggatgtatcttctcgaaaacacaggtgattttgttcgttcaaacgagctgcaggag 1848 Query: 444 ggtgatttcatcgtgctctactccgatgtaaagtcaggcaaatatctgatacggggcgtg 503 ||||||||||| ||| ||||||||||| | ||||||||||||||||||||||| || ||| Sbjct: 1849 ggtgatttcattgtgatctactccgatatcaagtcaggcaaatatctgatacgtggtgtg 1908 Query: 504 aaggt 508 ||||| Sbjct: 1909 aaggt 1913
>dbj|AK105441.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-125-A06, full insert sequence Length = 2474 Score = 244 bits (123), Expect = 2e-61 Identities = 204/231 (88%) Strand = Plus / Plus Query: 278 tcacctgccggagctcaagacgggggacggcatctcgatccccattgaggacatcggcac 337 ||||||||||||||| |||||| |||| || |||| |||||||| || |||||||| || Sbjct: 1677 tcacctgccggagctgaagacgagggatggtgtctccatccccatggaagacatcgggac 1736 Query: 338 atctcaggtgtggagcatgcggtaccggttttggcccaacaacaagagcagaatgtatct 397 ||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||| Sbjct: 1737 gtctcaggtgtggaacatgcggtaccggttttggcccaacaacaaaagcaggatgtatct 1796 Query: 398 tctagagaacactggtgacttcgttcgctcgaatgagctgcaggagggtgatttcatcgt 457 ||| || ||||| ||||| || ||||| || || ||||||||||||||||||||||| || Sbjct: 1797 tctcgaaaacacaggtgattttgttcgttcaaacgagctgcaggagggtgatttcattgt 1856 Query: 458 gctctactccgatgtaaagtcaggcaaatatctgatacggggcgtgaaggt 508 | ||||||||||| | ||||||||||||||||||||||| || |||||||| Sbjct: 1857 gatctactccgatatcaagtcaggcaaatatctgatacgtggtgtgaaggt 1907
>dbj|AK073805.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033069I02, full insert sequence Length = 2504 Score = 244 bits (123), Expect = 2e-61 Identities = 204/231 (88%) Strand = Plus / Plus Query: 278 tcacctgccggagctcaagacgggggacggcatctcgatccccattgaggacatcggcac 337 ||||||||||||||| |||||| |||| || |||| |||||||| || |||||||| || Sbjct: 1722 tcacctgccggagctgaagacgagggatggtgtctccatccccatggaagacatcgggac 1781 Query: 338 atctcaggtgtggagcatgcggtaccggttttggcccaacaacaagagcagaatgtatct 397 ||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||| Sbjct: 1782 gtctcaggtgtggaacatgcggtaccggttttggcccaacaacaaaagcaggatgtatct 1841 Query: 398 tctagagaacactggtgacttcgttcgctcgaatgagctgcaggagggtgatttcatcgt 457 ||| || ||||| ||||| || ||||| || || ||||||||||||||||||||||| || Sbjct: 1842 tctcgaaaacacaggtgattttgttcgttcaaacgagctgcaggagggtgatttcattgt 1901 Query: 458 gctctactccgatgtaaagtcaggcaaatatctgatacggggcgtgaaggt 508 | ||||||||||| | ||||||||||||||||||||||| || |||||||| Sbjct: 1902 gatctactccgatatcaagtcaggcaaatatctgatacgtggtgtgaaggt 1952
>gb|AY110818.1| Zea mays CL1869_-1 mRNA sequence Length = 2456 Score = 228 bits (115), Expect = 1e-56 Identities = 212/246 (86%) Strand = Plus / Plus Query: 266 ggaagcggagactcacctgccggagctcaagacgggggacggcatctcgatccccattga 325 |||||||||| ||||||||||||||| |||||| |||| |||||||| |||||||| || Sbjct: 1683 ggaagcggaggttcacctgccggagctgaagacgagggatggcatctccatccccatgga 1742 Query: 326 ggacatcggcacatctcaggtgtggagcatgcggtaccggttttggcccaacaacaagag 385 ||||||||| || || | ||||||| |||||||||| |||||||||||||||||||||| Sbjct: 1743 ggacatcggaacgtcgcgcgtgtggaacatgcggtacaggttttggcccaacaacaagag 1802 Query: 386 cagaatgtatcttctagagaacactggtgacttcgttcgctcgaatgagctgcaggaggg 445 |||||||||||| || || ||||| || || || ||||| || || ||||| ||||| Sbjct: 1803 cagaatgtatctgctggaaaacacaggggaatttgttcgttccaacgagcttcaggannn 1862 Query: 446 tgatttcatcgtgctctactccgatgtaaagtcaggcaaatatctgatacggggcgtgaa 505 ||||||| ||| ||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct: 1863 nnatttcatagtgatctactccgatgtcaagtcgggcaaatatctgatacggggcgtgaa 1922 Query: 506 ggtaag 511 |||||| Sbjct: 1923 ggtaag 1928
>emb|AJ279200.1|ETE279200 Eragrostis tef partial mRNA for transcription factor (vp1 gene) Length = 276 Score = 200 bits (101), Expect = 3e-48 Identities = 190/221 (85%) Strand = Plus / Plus Query: 264 aaggaagcggagactcacctgccggagctcaagacgggggacggcatctcgatccccatt 323 ||||||||||||| ||||||||||||||| |||||| |||| |||||||| ||||| || Sbjct: 56 aaggaagcggagattcacctgccggagctgaagacgagggatggcatctccatcccgatg 115 Query: 324 gaggacatcggcacatctcaggtgtggagcatgcggtaccggttttggcccaacaacaag 383 |||||||| ||| |||| | ||| |||| |||||||||| |||| ||||| ||||||||| Sbjct: 116 gaggacattggctcatcgcgggtktggaacatgcggtacaggttctggccgaacaacaag 175 Query: 384 agcagaatgtatcttctagagaacactggtgacttcgttcgctcgaatgagctgcaggag 443 ||||| ||||||||| ||||||||||||| || || ||||||| |||||||| || ||| Sbjct: 176 agcaggatgtatcttttagagaacactggcgatttygttcgctacaatgagcttcaagag 235 Query: 444 ggtgatttcatcgtgctctactccgatgtaaagtcaggcaa 484 || |||||||| ||| ||||||| ||||| ||||| ||||| Sbjct: 236 ggggatttcattgtgatctactctgatgtcaagtcgggcaa 276
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 119 bits (60), Expect = 9e-24 Identities = 102/116 (87%) Strand = Plus / Minus Query: 251 tggatggtttcagaaggaagcggagactcacctgccggagctcaagacgggggacggcat 310 ||||||||||||||||||||| ||| ||||||||||||||| |||||| |||| || | Sbjct: 39718066 tggatggtttcagaaggaagcagaggttcacctgccggagctgaagacgagggatggtgt 39718007 Query: 311 ctcgatccccattgaggacatcggcacatctcaggtgtggagcatgcggtaccggt 366 ||| |||||||| || |||||||| || ||||||||||||| |||||||||||||| Sbjct: 39718006 ctccatccccatggaagacatcgggacgtctcaggtgtggaacatgcggtaccggt 39717951 Score = 83.8 bits (42), Expect = 5e-13 Identities = 69/78 (88%) Strand = Plus / Minus Query: 411 ggtgacttcgttcgctcgaatgagctgcaggagggtgatttcatcgtgctctactccgat 470 ||||| || ||||| || || ||||||||||||||||||||||| ||| ||||||||||| Sbjct: 39717333 ggtgattttgttcgttcaaacgagctgcaggagggtgatttcattgtgatctactccgat 39717274 Query: 471 gtaaagtcaggcaaatat 488 | ||||||||||||||| Sbjct: 39717273 atcaagtcaggcaaatat 39717256 Score = 63.9 bits (32), Expect = 5e-07 Identities = 47/52 (90%) Strand = Plus / Minus Query: 364 ggttttggcccaacaacaagagcagaatgtatcttctagagaacactggtga 415 ||||||||||||||||||| ||||| ||||||||||| || ||||| ||||| Sbjct: 39717499 ggttttggcccaacaacaaaagcaggatgtatcttctcgaaaacacaggtga 39717448 Score = 48.1 bits (24), Expect = 0.029 Identities = 27/28 (96%) Strand = Plus / Plus Query: 368 ttggcccaacaacaagagcagaatgtat 395 ||||||||||||||||||||| |||||| Sbjct: 29635249 ttggcccaacaacaagagcaggatgtat 29635276
>dbj|AP003436.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0470A12 Length = 185095 Score = 119 bits (60), Expect = 9e-24 Identities = 102/116 (87%) Strand = Plus / Minus Query: 251 tggatggtttcagaaggaagcggagactcacctgccggagctcaagacgggggacggcat 310 ||||||||||||||||||||| ||| ||||||||||||||| |||||| |||| || | Sbjct: 68965 tggatggtttcagaaggaagcagaggttcacctgccggagctgaagacgagggatggtgt 68906 Query: 311 ctcgatccccattgaggacatcggcacatctcaggtgtggagcatgcggtaccggt 366 ||| |||||||| || |||||||| || ||||||||||||| |||||||||||||| Sbjct: 68905 ctccatccccatggaagacatcgggacgtctcaggtgtggaacatgcggtaccggt 68850 Score = 83.8 bits (42), Expect = 5e-13 Identities = 69/78 (88%) Strand = Plus / Minus Query: 411 ggtgacttcgttcgctcgaatgagctgcaggagggtgatttcatcgtgctctactccgat 470 ||||| || ||||| || || ||||||||||||||||||||||| ||| ||||||||||| Sbjct: 68232 ggtgattttgttcgttcaaacgagctgcaggagggtgatttcattgtgatctactccgat 68173 Query: 471 gtaaagtcaggcaaatat 488 | ||||||||||||||| Sbjct: 68172 atcaagtcaggcaaatat 68155 Score = 63.9 bits (32), Expect = 5e-07 Identities = 47/52 (90%) Strand = Plus / Minus Query: 364 ggttttggcccaacaacaagagcagaatgtatcttctagagaacactggtga 415 ||||||||||||||||||| ||||| ||||||||||| || ||||| ||||| Sbjct: 68398 ggttttggcccaacaacaaaagcaggatgtatcttctcgaaaacacaggtga 68347
>dbj|D16640.1|RICOSVP1 Oryza sativa (japonica cultivar-group) DNA for VP1 protein, complete cds Length = 3743 Score = 119 bits (60), Expect = 9e-24 Identities = 102/116 (87%) Strand = Plus / Plus Query: 251 tggatggtttcagaaggaagcggagactcacctgccggagctcaagacgggggacggcat 310 ||||||||||||||||||||| ||| ||||||||||||||| |||||| |||| || | Sbjct: 2230 tggatggtttcagaaggaagcagaggttcacctgccggagctgaagacgagggatggtgt 2289 Query: 311 ctcgatccccattgaggacatcggcacatctcaggtgtggagcatgcggtaccggt 366 ||| |||||||| || |||||||| || ||||||||||||| |||||||||||||| Sbjct: 2290 ctccatccccatggaagacatcgggacgtctcaggtgtggaacatgcggtaccggt 2345 Score = 83.8 bits (42), Expect = 5e-13 Identities = 69/78 (88%) Strand = Plus / Plus Query: 411 ggtgacttcgttcgctcgaatgagctgcaggagggtgatttcatcgtgctctactccgat 470 ||||| || ||||| || || ||||||||||||||||||||||| ||| ||||||||||| Sbjct: 2958 ggtgattttgttcgttcaaacgagctgcaggagggtgatttcattgtgatctactccgat 3017 Query: 471 gtaaagtcaggcaaatat 488 | ||||||||||||||| Sbjct: 3018 atcaagtcaggcaaatat 3035 Score = 63.9 bits (32), Expect = 5e-07 Identities = 47/52 (90%) Strand = Plus / Plus Query: 364 ggttttggcccaacaacaagagcagaatgtatcttctagagaacactggtga 415 ||||||||||||||||||| ||||| ||||||||||| || ||||| ||||| Sbjct: 2792 ggttttggcccaacaacaaaagcaggatgtatcttctcgaaaacacaggtga 2843
>emb|AJ000552.1|CPVP1HOM Craterostigma plantagineum mRNA for VP1 protein homologue Length = 2067 Score = 85.7 bits (43), Expect = 1e-13 Identities = 118/143 (82%) Strand = Plus / Plus Query: 267 gaagcggagactcacctgccggagctcaagacgggggacggcatctcgatccccattgag 326 |||||||||| ||| || || |||||| ||||| ||||||| || ||| || |||| || Sbjct: 1708 gaagcggagattcatctccccgagctcgagacgagggacgggatttcggtcgccatggaa 1767 Query: 327 gacatcggcacatctcaggtgtggagcatgcggtaccggttttggcccaacaacaagagc 386 ||||| || || || | ||||||| ||||| ||| | ||||||||||||||||||||| Sbjct: 1768 gacattggaacttcgcgtgtgtggaatatgcgttacagattttggcccaacaacaagagc 1827 Query: 387 agaatgtatcttctagagaacac 409 |||||||| ||||| |||||||| Sbjct: 1828 agaatgtaccttctcgagaacac 1850
>dbj|AB015183.1| Mesembryanthemum crystallinum McVp1 mRNA for transcription factor Vp1, complete cds Length = 2975 Score = 71.9 bits (36), Expect = 2e-09 Identities = 120/148 (81%) Strand = Plus / Plus Query: 262 agaaggaagcggagactcacctgccggagctcaagacgggggacggcatctcgatcccca 321 |||| ||||| ||||| || |||||||| || || || ||||||| || | ||| ||| Sbjct: 2202 agaaagaagccgagacacatctgccggaactagaggcgagggacgggattcccatcgcca 2261 Query: 322 ttgaggacatcggcacatctcaggtgtggagcatgcggtaccggttttggcccaacaaca 381 | || ||||| |||||||||| ||||||| |||||| || |||||||||| ||||||| Sbjct: 2262 tggaagacattggcacatctcgtgtgtggaacatgcgctataggttttggcctaacaaca 2321 Query: 382 agagcagaatgtatcttctagagaacac 409 | ||||||||||| ||||| || ||||| Sbjct: 2322 aaagcagaatgtaccttcttgaaaacac 2349
>ref|NM_113376.2| Arabidopsis thaliana ABI3 (ABA INSENSITIVE 3); DNA binding / transcription factor/ transcriptional activator AT3G24650 (ABI3) mRNA, complete cds Length = 2965 Score = 61.9 bits (31), Expect = 2e-06 Identities = 88/107 (82%) Strand = Plus / Plus Query: 303 gacggcatctcgatccccattgaggacatcggcacatctcaggtgtggagcatgcggtac 362 ||||||||||| | |||| || |||||||| || |||| || |||| |||||| ||| Sbjct: 2332 gacggcatctctctggccatggaagacatcggaacctctcgtgtttggaacatgcgctac 2391 Query: 363 cggttttggcccaacaacaagagcagaatgtatcttctagagaacac 409 |||||||||| |||||||| ||||| |||||||| || |||||||| Sbjct: 2392 aggttttggcctaacaacaaaagcaggatgtatctcctcgagaacac 2438
>dbj|AK220739.1| Arabidopsis thaliana mRNA for abscisic acid-insensitive protein 3, complete cds, clone: RAFL22-12-F22 Length = 2993 Score = 61.9 bits (31), Expect = 2e-06 Identities = 88/107 (82%) Strand = Plus / Plus Query: 303 gacggcatctcgatccccattgaggacatcggcacatctcaggtgtggagcatgcggtac 362 ||||||||||| | |||| || |||||||| || |||| || |||| |||||| ||| Sbjct: 2354 gacggcatctctctggccatggaagacatcggaacctctcgtgtttggaacatgcgctac 2413 Query: 363 cggttttggcccaacaacaagagcagaatgtatcttctagagaacac 409 |||||||||| |||||||| ||||| |||||||| || |||||||| Sbjct: 2414 aggttttggcctaacaacaaaagcaggatgtatctcctcgagaacac 2460
>dbj|AK220879.1| Arabidopsis thaliana mRNA for abscisic acid-insensitive protein 3, complete cds, clone: RAFL22-43-H23 Length = 2993 Score = 61.9 bits (31), Expect = 2e-06 Identities = 88/107 (82%) Strand = Plus / Plus Query: 303 gacggcatctcgatccccattgaggacatcggcacatctcaggtgtggagcatgcggtac 362 ||||||||||| | |||| || |||||||| || |||| || |||| |||||| ||| Sbjct: 2354 gacggcatctctctggccatggaagacatcggaacctctcgtgtttggaacatgcgctac 2413 Query: 363 cggttttggcccaacaacaagagcagaatgtatcttctagagaacac 409 |||||||||| |||||||| ||||| |||||||| || |||||||| Sbjct: 2414 aggttttggcctaacaacaaaagcaggatgtatctcctcgagaacac 2460
>emb|X68141.1|ATABI3 A.thaliana mRNA for ABI3 protein Length = 2868 Score = 61.9 bits (31), Expect = 2e-06 Identities = 88/107 (82%) Strand = Plus / Plus Query: 303 gacggcatctcgatccccattgaggacatcggcacatctcaggtgtggagcatgcggtac 362 ||||||||||| | |||| || |||||||| || |||| || |||| |||||| ||| Sbjct: 2218 gacggcatctctctggccatggaagacatcggaacctctcgtgtttggaacatgcgctac 2277 Query: 363 cggttttggcccaacaacaagagcagaatgtatcttctagagaacac 409 |||||||||| |||||||| ||||| |||||||| || |||||||| Sbjct: 2278 aggttttggcctaacaacaaaagcaggatgtatctcctcgagaacac 2324
>emb|AJ003165.1|PTAJ3165 Populus trichocarpa cv. Trichobel ABI3 gene Length = 3772 Score = 60.0 bits (30), Expect = 8e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 366 ttttggcccaacaacaagagcagaatgtatcttctagagaacactggtga 415 ||||||||||||||||| ||||| |||||||| || || ||||||||||| Sbjct: 2327 ttttggcccaacaacaaaagcaggatgtatctcctcgaaaacactggtga 2376
>ref|XM_474341.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1302 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 359 gtaccggttttggcccaacaacaagagcagaatgtat 395 |||| |||| ||||||||||||||||||||||||||| Sbjct: 1044 gtacaggttctggcccaacaacaagagcagaatgtat 1080
>emb|AJ131113.1|CNO131113 Chamaecyparis nootkatensis mRNA for VP1/ABI3-like protein Length = 2901 Score = 58.0 bits (29), Expect = 3e-05 Identities = 83/101 (82%) Strand = Plus / Plus Query: 366 ttttggcccaacaacaagagcagaatgtatcttctagagaacactggtgacttcgttcgc 425 |||||||||||||| |||||||| |||||||| || || || |||||||| || || | Sbjct: 2326 ttttggcccaacaataagagcaggatgtatctgctggaaaatactggtgattttgtcaga 2385 Query: 426 tcgaatgagctgcaggagggtgatttcatcgtgctctactc 466 || |||| ||||||||||| || |||||||| || ||||| Sbjct: 2386 tcaaatggcctgcaggagggggacttcatcgtactatactc 2426
>emb|AJ003166.1|PTAJ3166 Populus trichocarpa cv. Trichobel ABI3 mRNA Length = 2205 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 364 ggttttggcccaacaacaagagcagaatgtatcttctagagaacactgg 412 ||||||||||||||||||| ||||| |||||||| || || |||||||| Sbjct: 1937 ggttttggcccaacaacaaaagcaggatgtatctcctcgaaaacactgg 1985
>dbj|AK072874.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023145I07, full insert sequence Length = 1997 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 359 gtaccggttttggcccaacaacaagagcagaatgtat 395 |||| |||| ||||||||||||||||||||||||||| Sbjct: 1549 gtacaggttctggcccaacaacaagagcagaatgtat 1585
>ref|XM_474342.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1515 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 364 ggttttggcccaacaacaagagcagaatgtat 395 |||| ||||||||||||||||||||||||||| Sbjct: 1262 ggttctggcccaacaacaagagcagaatgtat 1293
>emb|AL606668.2|OSJN00083 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064G10, complete sequence Length = 150206 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 364 ggttttggcccaacaacaagagcagaatgtat 395 |||| ||||||||||||||||||||||||||| Sbjct: 38081 ggttctggcccaacaacaagagcagaatgtat 38050 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 364 ggttttggcccaacaacaagagcagaatgtat 395 |||| ||||||||||||||||||||||||||| Sbjct: 31226 ggttctggcccaacaacaagagcagaatgtat 31195
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 364 ggttttggcccaacaacaagagcagaatgtat 395 |||| ||||||||||||||||||||||||||| Sbjct: 34583960 ggttctggcccaacaacaagagcagaatgtat 34583929 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 364 ggttttggcccaacaacaagagcagaatgtat 395 |||| ||||||||||||||||||||||||||| Sbjct: 34577105 ggttctggcccaacaacaagagcagaatgtat 34577074 Score = 54.0 bits (27), Expect = 5e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 431 tgagctgcaggagggtgatttcatcgtgctctactccgatgtaaagtcaggcaaa 485 ||||||| |||||||||||||||| ||| ||||||| ||| | ||||| |||||| Sbjct: 5121133 tgagctgtaggagggtgatttcatggtgatctactctgatatcaagtccggcaaa 5121187
>emb|AL732350.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0101F08, complete sequence Length = 63897 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 364 ggttttggcccaacaacaagagcagaatgtat 395 |||| ||||||||||||||||||||||||||| Sbjct: 37352 ggttctggcccaacaacaagagcagaatgtat 37321 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 364 ggttttggcccaacaacaagagcagaatgtat 395 |||| ||||||||||||||||||||||||||| Sbjct: 30653 ggttctggcccaacaacaagagcagaatgtat 30622
>emb|AL731589.3|OSJN00239 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039G19, complete sequence Length = 144144 Score = 54.0 bits (27), Expect = 5e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 431 tgagctgcaggagggtgatttcatcgtgctctactccgatgtaaagtcaggcaaa 485 ||||||| |||||||||||||||| ||| ||||||| ||| | ||||| |||||| Sbjct: 97406 tgagctgtaggagggtgatttcatggtgatctactctgatatcaagtccggcaaa 97460
>dbj|AB164427.1| Psophocarpus tetragonolobus wbABI3 mRNA for ABI-3 homolog, complete cds Length = 2537 Score = 54.0 bits (27), Expect = 5e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 369 tggcccaacaacaagagcagaatgtatcttctagagaacactggtga 415 ||||| || |||||||||||||||||| | || |||||||||||||| Sbjct: 2028 tggccaaataacaagagcagaatgtatttgctcgagaacactggtga 2074
>gb|U28645.1|PVU28645 Phaseolus vulgaris embryo-specific acidic transcriptional activator PvAlf mRNA, complete cds Length = 2492 Score = 54.0 bits (27), Expect = 5e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 369 tggcccaacaacaagagcagaatgtatcttctagagaacactggtga 415 ||||| |||||||| |||||||||||| | || |||||||||||||| Sbjct: 2027 tggccaaacaacaaaagcagaatgtatatgctcgagaacactggtga 2073
>dbj|AB085836.1| Phaseolus vulgaris PvALF mRNA for abscisic acid insensitive 3-like factor, complete cds Length = 2455 Score = 54.0 bits (27), Expect = 5e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 369 tggcccaacaacaagagcagaatgtatcttctagagaacactggtga 415 ||||| |||||||| |||||||||||| | || |||||||||||||| Sbjct: 1999 tggccaaacaacaaaagcagaatgtatttgctcgagaacactggtga 2045
>gb|AC021044.5| Arabidopsis thaliana chromosome I BAC F3H9 genomic sequence, complete sequence Length = 121720 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 364 ggttttggcccaacaacaagagcagaatgtatcttctagagaacac 409 |||||||| |||| |||||||||||||||||| | || |||||||| Sbjct: 47135 ggttttggtccaataacaagagcagaatgtatgtcctcgagaacac 47180
>gb|AF400124.1|AF400124 Arabidopsis thaliana LEAFY COTYLEDON 2 gene, complete cds Length = 3004 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 364 ggttttggcccaacaacaagagcagaatgtatcttctagagaacac 409 |||||||| |||| |||||||||||||||||| | || |||||||| Sbjct: 1941 ggttttggtccaataacaagagcagaatgtatgtcctcgagaacac 1986
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Minus Query: 429 aatgagctgcaggagggtgatttcatcgtgctctactccgat 470 ||||||| | |||||||||||||||| ||| ||||||||||| Sbjct: 4966130 aatgagccgtaggagggtgatttcatagtgatctactccgat 4966089
>dbj|AP004568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0547A06 Length = 150922 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Minus Query: 429 aatgagctgcaggagggtgatttcatcgtgctctactccgat 470 ||||||| | |||||||||||||||| ||| ||||||||||| Sbjct: 3687 aatgagccgtaggagggtgatttcatagtgatctactccgat 3646
>dbj|AP004646.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1122_A12 Length = 149011 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Minus Query: 429 aatgagctgcaggagggtgatttcatcgtgctctactccgat 470 ||||||| | |||||||||||||||| ||| ||||||||||| Sbjct: 125384 aatgagccgtaggagggtgatttcatagtgatctactccgat 125343
>emb|AJ309217.1|STU309217 Solanum tuberosum partial mRNA for VP1/ABI3-like protein Length = 1089 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 366 ttttggcccaacaacaagagcagaatgtatcttctagagaacactggtga 415 |||||||| || ||||| ||||||||||| ||||| |||||||| ||||| Sbjct: 1003 ttttggccaaataacaaaagcagaatgtaccttctcgagaacacaggtga 1052
>dbj|AK104021.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-008-D04, full insert sequence Length = 889 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 429 aatgagctgcaggagggtgatttcatcgtgctctactccgat 470 ||||||| | |||||||||||||||| ||| ||||||||||| Sbjct: 817 aatgagccgtaggagggtgatttcatagtgatctactccgat 858
>dbj|AK072453.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023119K08, full insert sequence Length = 2293 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 429 aatgagctgcaggagggtgatttcatcgtgctctactccgat 470 ||||||| | |||||||||||||||| ||| ||||||||||| Sbjct: 865 aatgagccgtaggagggtgatttcatagtgatctactccgat 906
>dbj|AK071706.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023112F07, full insert sequence Length = 1687 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 429 aatgagctgcaggagggtgatttcatcgtgctctactccgat 470 ||||||| | |||||||||||||||| ||| ||||||||||| Sbjct: 867 aatgagccgtaggagggtgatttcatagtgatctactccgat 908
>dbj|AK066827.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075C16, full insert sequence Length = 929 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 429 aatgagctgcaggagggtgatttcatcgtgctctactccgat 470 ||||||| | |||||||||||||||| ||| ||||||||||| Sbjct: 859 aatgagccgtaggagggtgatttcatagtgatctactccgat 900
>gb|AF426832.1| Prunus avium ABI3-like transcription factor mRNA, complete cds Length = 2576 Score = 50.1 bits (25), Expect = 0.007 Identities = 55/65 (84%) Strand = Plus / Plus Query: 345 gtgtggagcatgcggtaccggttttggcccaacaacaagagcagaatgtatcttctagag 404 ||||||| |||||| ||| ||| ||||||||||| || ||||| |||||||| ||||| Sbjct: 2187 gtgtggaacatgcgctacaggtactggcccaacaataaaagcaggatgtatctcctagaa 2246 Query: 405 aacac 409 ||||| Sbjct: 2247 aacac 2251
>ref|NM_102595.2| Arabidopsis thaliana LEC2 (LEAFY COTYLEDON 2); transcription factor AT1G28300 (LEC2) mRNA, complete cds Length = 1317 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Plus Query: 365 gttttggcccaacaacaagagcagaatgtatcttctagagaacac 409 ||||||| |||| |||||||||||||||||| | || |||||||| Sbjct: 710 gttttggtccaataacaagagcagaatgtatgtcctcgagaacac 754
>gb|AY568668.1| Arabidopsis thaliana leafy cotyledon 2 (LEC2) mRNA, complete cds Length = 1089 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Plus Query: 365 gttttggcccaacaacaagagcagaatgtatcttctagagaacac 409 ||||||| |||| |||||||||||||||||| | || |||||||| Sbjct: 672 gttttggtccaataacaagagcagaatgtatgtcctcgagaacac 716
>gb|AF411073.1| Prunus avium viviparous protein (vp1) mRNA, complete cds Length = 2640 Score = 50.1 bits (25), Expect = 0.007 Identities = 55/65 (84%) Strand = Plus / Plus Query: 345 gtgtggagcatgcggtaccggttttggcccaacaacaagagcagaatgtatcttctagag 404 ||||||| |||||| ||| ||| ||||||||||| || ||||| |||||||| ||||| Sbjct: 2251 gtgtggaacatgcgctacaggtactggcccaacaataaaagcaggatgtatctcctagaa 2310 Query: 405 aacac 409 ||||| Sbjct: 2311 aacac 2315
>gb|DQ446296.1| Arabidopsis thaliana clone pENTR221-At1g28300 transcriptional factor B3 family protein/leafy cotyledon 2 (At1g28300) mRNA, complete cds Length = 1092 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Plus Query: 365 gttttggcccaacaacaagagcagaatgtatcttctagagaacac 409 ||||||| |||| |||||||||||||||||| | || |||||||| Sbjct: 672 gttttggtccaataacaagagcagaatgtatgtcctcgagaacac 716
>emb|AJ630496.1| Arabidopsis thaliana mRNA for hypothetical protein, clone At1g28300 Length = 1089 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Plus Query: 365 gttttggcccaacaacaagagcagaatgtatcttctagagaacac 409 ||||||| |||| |||||||||||||||||| | || |||||||| Sbjct: 672 gttttggtccaataacaagagcagaatgtatgtcctcgagaacac 716
>gb|AF400123.1|AF400123 Arabidopsis thaliana LEAFY COTYLEDON 2 mRNA, complete cds Length = 1332 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Plus Query: 365 gttttggcccaacaacaagagcagaatgtatcttctagagaacac 409 ||||||| |||| |||||||||||||||||| | || |||||||| Sbjct: 708 gttttggtccaataacaagagcagaatgtatgtcctcgagaacac 752
>dbj|AK109920.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-150-E10, full insert sequence Length = 1176 Score = 50.1 bits (25), Expect = 0.007 Identities = 34/37 (91%) Strand = Plus / Plus Query: 359 gtaccggttttggcccaacaacaagagcagaatgtat 395 |||| ||| ||||||||||||||||||||| |||||| Sbjct: 463 gtacaggtattggcccaacaacaagagcaggatgtat 499
>ref|NM_191730.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 492 Score = 48.1 bits (24), Expect = 0.029 Identities = 27/28 (96%) Strand = Plus / Plus Query: 368 ttggcccaacaacaagagcagaatgtat 395 ||||||||||||||||||||| |||||| Sbjct: 24 ttggcccaacaacaagagcaggatgtat 51
>dbj|AP003410.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1142C05 Length = 151457 Score = 48.1 bits (24), Expect = 0.029 Identities = 27/28 (96%) Strand = Plus / Plus Query: 368 ttggcccaacaacaagagcagaatgtat 395 ||||||||||||||||||||| |||||| Sbjct: 105069 ttggcccaacaacaagagcaggatgtat 105096
>gb|AF145787.1|SBVP1S3 Sorghum bicolor genomic sequence similar to vp1 maize gene Length = 450 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 489 ctgatacggggcgtgaaggtaag 511 ||||||||||||||||||||||| Sbjct: 426 ctgatacggggcgtgaaggtaag 448
>gb|AF148560.1|SBISVP3 Sorghum bicolor insertion sequence IS9530 ISVP1 (ISvp1) gene sequence Length = 379 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 489 ctgatacggggcgtgaaggtaag 511 ||||||||||||||||||||||| Sbjct: 355 ctgatacggggcgtgaaggtaag 377
>dbj|AB099513.1| Fagopyrum esculentum VP1 gene for transcription factor VP-1 homologue, complete cds Length = 3390 Score = 46.1 bits (23), Expect = 0.11 Identities = 44/51 (86%) Strand = Plus / Plus Query: 364 ggttttggcccaacaacaagagcagaatgtatcttctagagaacactggtg 414 |||| ||||| ||||| |||||||| |||||||| | ||||||||||||| Sbjct: 2828 ggttctggccaaacaataagagcaggatgtatctcttggagaacactggtg 2878
>dbj|AB080195.1| Pisum sativum abi3 mRNA for ABA insensitive 3, complete cds Length = 3275 Score = 46.1 bits (23), Expect = 0.11 Identities = 44/51 (86%) Strand = Plus / Plus Query: 368 ttggcccaacaacaagagcagaatgtatcttctagagaacactggtgactt 418 |||||| || ||||| |||||||||||| | || || |||||||||||||| Sbjct: 2660 ttggccaaataacaaaagcagaatgtatttgcttgaaaacactggtgactt 2710
>gb|AC097536.3| Homo sapiens BAC clone RP11-803N5 from 2, complete sequence Length = 194553 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 29 attttaatttctccttgatta 49 ||||||||||||||||||||| Sbjct: 48166 attttaatttctccttgatta 48186
>gb|AC160538.8| Mus musculus chromosome 15, clone RP24-156D3, complete sequence Length = 158943 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 257 gtttcagaaggaagcggagactca 280 ||||||||||||||| |||||||| Sbjct: 77739 gtttcagaaggaagcagagactca 77716
>gb|AC164419.3| Mus musculus chromosome 5, clone RP23-309G12, complete sequence Length = 159565 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 251 tggatggtttcagaaggaag 270 |||||||||||||||||||| Sbjct: 105231 tggatggtttcagaaggaag 105212
>gb|CP000070.1| Trypanosoma brucei chromosome 7, complete sequence Length = 2205233 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 116 atcttcctctctttctattg 135 |||||||||||||||||||| Sbjct: 1711695 atcttcctctctttctattg 1711676
>gb|AC091527.21| Trypanosoma brucei chromosome 7 clone RPCI93-33N13, complete sequence Length = 114057 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 116 atcttcctctctttctattg 135 |||||||||||||||||||| Sbjct: 32768 atcttcctctctttctattg 32749
>gb|AC159439.1| Trypanosoma brucei chromosome 7 clone RPCI93-2F2, complete sequence Length = 134290 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 116 atcttcctctctttctattg 135 |||||||||||||||||||| Sbjct: 128002 atcttcctctctttctattg 127983
>gb|AC157211.7| Mus musculus chromosome 1, clone RP23-204C6, complete sequence Length = 206840 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 acctagctatgaatggatct 119 |||||||||||||||||||| Sbjct: 45141 acctagctatgaatggatct 45122
>ref|XM_606908.2| PREDICTED: Bos taurus similar to CG6451-PA, transcript variant 1 (LOC528485), mRNA Length = 5168 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 430 atgagctgcaggagggtgat 449 |||||||||||||||||||| Sbjct: 1283 atgagctgcaggagggtgat 1302
>ref|XM_876920.1| PREDICTED: Bos taurus similar to CG6451-PA, transcript variant 3 (LOC528485), mRNA Length = 4343 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 430 atgagctgcaggagggtgat 449 |||||||||||||||||||| Sbjct: 452 atgagctgcaggagggtgat 471
>gb|AC102446.8| Mus musculus chromosome 5, clone RP24-201G17, complete sequence Length = 176748 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 251 tggatggtttcagaaggaag 270 |||||||||||||||||||| Sbjct: 160294 tggatggtttcagaaggaag 160275
>gb|AC113976.13| Mus musculus chromosome 15, clone RP23-146F23, complete sequence Length = 184010 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 257 gtttcagaaggaagcggagactca 280 ||||||||||||||| |||||||| Sbjct: 27229 gtttcagaaggaagcagagactca 27252
>gb|AC144483.10| Medicago truncatula clone mth2-12f13, complete sequence Length = 105599 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 atcttcctctctttctattg 135 |||||||||||||||||||| Sbjct: 27833 atcttcctctctttctattg 27852
>emb|AL355580.13| Human DNA sequence from clone RP11-76K10 on chromosome 13 Contains the 3' end of a novel gene, complete sequence Length = 179497 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 aaaagtgtctcttcttccat 251 |||||||||||||||||||| Sbjct: 128543 aaaagtgtctcttcttccat 128562
>emb|AL034557.8|PFMAL4P1 Plasmodium falciparum MAL4P1 Length = 347582 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 ttttaatttctccttgatta 49 |||||||||||||||||||| Sbjct: 107453 ttttaatttctccttgatta 107434
>gb|AC087292.14| Homo sapiens chromosome 17, clone RP11-810M2, complete sequence Length = 195144 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 aactgtatgacctagctatg 110 |||||||||||||||||||| Sbjct: 126818 aactgtatgacctagctatg 126837
>dbj|AB192509.2| Sus scrofa genomic DNA, chromosome 7, BAC clone: L139G16, complete sequence Length = 157870 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 ttgatttccttcttgatttc 164 |||||||||||||||||||| Sbjct: 39208 ttgatttccttcttgatttc 39227
>gb|AC025627.13| Homo sapiens chromosome 17, clone RP11-1113L8, complete sequence Length = 149866 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 250 atggatggtttcagaaggaa 269 |||||||||||||||||||| Sbjct: 91850 atggatggtttcagaaggaa 91869
>emb|BX664604.6| Zebrafish DNA sequence from clone CH211-253F20 in linkage group 7, complete sequence Length = 150508 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 36 tttctccttgattactctttgatt 59 ||||||||||||| |||||||||| Sbjct: 58037 tttctccttgatttctctttgatt 58014
>gb|AC111017.23| Mus musculus chromosome 13, clone RP23-62F4, complete sequence Length = 239344 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 386 cagaatgtatcttctagaga 405 |||||||||||||||||||| Sbjct: 125421 cagaatgtatcttctagaga 125402
>gb|AC007060.3|T5I8 Arabidopsis thaliana chromosome 1 BAC T5I8 sequence, complete sequence Length = 96183 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 131 tattgatcttggtgttgatttcct 154 |||| ||||||||||||||||||| Sbjct: 7693 tattcatcttggtgttgatttcct 7670
>emb|BX005164.9| Mouse DNA sequence from clone RP23-257P3 on chromosome X, complete sequence Length = 168756 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 ttttaatttctccttgatta 49 |||||||||||||||||||| Sbjct: 76267 ttttaatttctccttgatta 76248
>dbj|AP004514.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT01O22, TM0043b, complete sequence Length = 32095 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 attgcaacttgcaactgtat 98 |||||||||||||||||||| Sbjct: 27082 attgcaacttgcaactgtat 27063
>dbj|AB005558.1| Daucus carota mRNA for C-ABI3 protein, complete cds Length = 2717 Score = 40.1 bits (20), Expect = 7.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 480 ggcaaatatctgatacggggcgtgaaggtaag 511 ||||||||||| ||||| || ||||||||||| Sbjct: 2202 ggcaaatatcttatacgaggagtgaaggtaag 2233 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,896,728 Number of Sequences: 3902068 Number of extensions: 4896728 Number of successful extensions: 109336 Number of sequences better than 10.0: 95 Number of HSP's better than 10.0 without gapping: 97 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 108994 Number of HSP's gapped (non-prelim): 332 length of query: 520 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 497 effective length of database: 17,143,297,704 effective search space: 8520218958888 effective search space used: 8520218958888 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
