ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags19a12 |
|---|---|
| Clone Library Name | barley_pub |
>NUSB_THETN (Q8RAD1) N utilization substance protein B homolog (Protein nusB)| Length = 140 Score = 55.8 bits (133), Expect = 7e-08 Identities = 29/89 (32%), Positives = 53/89 (59%), Gaps = 2/89 (2%) Frame = +1 Query: 217 RDMLVAVASGWDQHVEVINKIIPQHWKDEPVARI--LELCILHIAMAEMTSKGTPHKVAI 390 ++ + G +H+E I++ I ++ KD P+ R+ ++L IL +M EM P ++I Sbjct: 41 KEYIEGTVRGTVEHLEEIDREIEKYSKDWPLYRMPRIDLAILRCSMYEMLYGNIPVSISI 100 Query: 391 NEAVDLAKRFCDGGAPRVINGCLRTYVKD 477 NEAV++AK++ +P ING L +V++ Sbjct: 101 NEAVEIAKKYSTDDSPSFINGLLGAFVRE 129
>NUSB_STRR6 (P65583) N utilization substance protein B homolog (Protein nusB)| Length = 140 Score = 53.1 bits (126), Expect = 4e-07 Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 4/88 (4%) Frame = +1 Query: 226 LVAVASGWDQHVEVINKIIPQH----WKDEPVARILELCILHIAMAEMTSKGTPHKVAIN 393 L+ + SG E ++K I QH W E + ++E +L + + E+TS TP VA+N Sbjct: 52 LIDLVSGVQAKKEELDKQITQHLKAGWTIERLT-LVERNLLRLGVFEITSFDTPQLVAVN 110 Query: 394 EAVDLAKRFCDGGAPRVINGCLRTYVKD 477 EA++LAK F D + R ING L +V + Sbjct: 111 EAIELAKDFSDQKSARFINGLLSQFVTE 138
>NUSB_STRPN (P65582) N utilization substance protein B homolog (Protein nusB)| Length = 140 Score = 53.1 bits (126), Expect = 4e-07 Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 4/88 (4%) Frame = +1 Query: 226 LVAVASGWDQHVEVINKIIPQH----WKDEPVARILELCILHIAMAEMTSKGTPHKVAIN 393 L+ + SG E ++K I QH W E + ++E +L + + E+TS TP VA+N Sbjct: 52 LIDLVSGVQAKKEELDKQITQHLKAGWTIERLT-LVERNLLRLGVFEITSFDTPQLVAVN 110 Query: 394 EAVDLAKRFCDGGAPRVINGCLRTYVKD 477 EA++LAK F D + R ING L +V + Sbjct: 111 EAIELAKDFSDQKSARFINGLLSQFVTE 138
>NUSB_VIBVY (Q7MN52) N utilization substance protein B homolog (Protein nusB)| Length = 155 Score = 52.0 bits (123), Expect = 1e-06 Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 1/104 (0%) Frame = +1 Query: 151 NEAEVLSAPPRLVYNNFVLRLARDMLVAVASGWDQHVEVINKIIPQHWKDEPVARILELC 330 +E E +A P L + RD+L V H E+ +KI P + ++EL Sbjct: 45 DEEEHRAAEPALAAPETDVAYFRDLLTGVVLS---HTELDSKIRPYVSRPMQDLDMMELA 101 Query: 331 ILHIAMAEMTSK-GTPHKVAINEAVDLAKRFCDGGAPRVINGCL 459 +L +AM EMT + P+KV INEA++LAK F + + +NG L Sbjct: 102 LLRLAMYEMTRREDVPYKVVINEAIELAKVFAAEDSHKFVNGVL 145
>NUSB_VIBVU (Q8DFA0) N utilization substance protein B homolog (Protein nusB)| Length = 155 Score = 52.0 bits (123), Expect = 1e-06 Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 1/104 (0%) Frame = +1 Query: 151 NEAEVLSAPPRLVYNNFVLRLARDMLVAVASGWDQHVEVINKIIPQHWKDEPVARILELC 330 +E E +A P L + RD+L V H E+ +KI P + ++EL Sbjct: 45 DEEEHRAAEPALAAPETDVAYFRDLLTGVVLS---HTELDSKIRPYVSRPMQDLDMMELA 101 Query: 331 ILHIAMAEMTSK-GTPHKVAINEAVDLAKRFCDGGAPRVINGCL 459 +L +AM EMT + P+KV INEA++LAK F + + +NG L Sbjct: 102 LLRLAMYEMTRREDVPYKVVINEAIELAKVFAAEDSHKFVNGVL 145
>NUSB_VIBPA (Q87RU3) N utilization substance protein B homolog (Protein nusB)| Length = 155 Score = 51.6 bits (122), Expect = 1e-06 Identities = 35/107 (32%), Positives = 56/107 (52%), Gaps = 1/107 (0%) Frame = +1 Query: 142 DSANEAEVLSAPPRLVYNNFVLRLARDMLVAVASGWDQHVEVINKIIPQHWKDEPVARIL 321 D +E E+ ++ P L + R++L V H E+ +KI P + ++ Sbjct: 42 DKYDEEELRASEPALAAPETDVAYFRELLSGVVLS---HAELDSKIRPYVSRPMQDLDMM 98 Query: 322 ELCILHIAMAEMTSK-GTPHKVAINEAVDLAKRFCDGGAPRVINGCL 459 EL +L +AM EMT + P+KV INEA++LAK F + + +NG L Sbjct: 99 ELALLRLAMYEMTRREDVPYKVVINEAIELAKVFAAEDSHKFVNGVL 145
>NUSB_STAES (Q8CP37) N utilization substance protein B homolog (Protein nusB)| Length = 129 Score = 51.2 bits (121), Expect = 2e-06 Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 2/82 (2%) Frame = +1 Query: 220 DMLVAVASGWDQHVEVINKIIPQHWKDEPVARIL--ELCILHIAMAEMTSKGTPHKVAIN 393 D + + +G H V+++ I H KD + R+L + IL +A E+ TP KV +N Sbjct: 43 DFIYWLVTGVKDHQIVLDETIKPHLKDWSIDRLLKSDRIILRMATFEILHSDTPKKVVVN 102 Query: 394 EAVDLAKRFCDGGAPRVINGCL 459 EAV+L K+F D + +NG L Sbjct: 103 EAVELTKQFSDDDHYKFVNGVL 124
>NUSB_STAEQ (Q5HP28) N utilization substance protein B homolog (Protein nusB)| Length = 129 Score = 51.2 bits (121), Expect = 2e-06 Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 2/82 (2%) Frame = +1 Query: 220 DMLVAVASGWDQHVEVINKIIPQHWKDEPVARIL--ELCILHIAMAEMTSKGTPHKVAIN 393 D + + +G H V+++ I H KD + R+L + IL +A E+ TP KV +N Sbjct: 43 DFIYWLVTGVKDHQIVLDETIKPHLKDWSIDRLLKSDRIILRMATFEILHSDTPKKVVVN 102 Query: 394 EAVDLAKRFCDGGAPRVINGCL 459 EAV+L K+F D + +NG L Sbjct: 103 EAVELTKQFSDDDHYKFVNGVL 124
>NUSB_STAAW (P65579) N utilization substance protein B homolog (Protein nusB)| Length = 129 Score = 51.2 bits (121), Expect = 2e-06 Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 2/82 (2%) Frame = +1 Query: 235 VASGWDQHVEVINKIIPQHWKDEPVARILEL--CILHIAMAEMTSKGTPHKVAINEAVDL 408 + SG H V+++ I + KD +AR+L+ IL +A E+ TP KV +NEAV+L Sbjct: 48 LVSGVKDHEPVLDETISPYLKDWTIARLLKTDRIILRMATYEILHSDTPAKVVMNEAVEL 107 Query: 409 AKRFCDGGAPRVINGCLRTYVK 474 K+F D + ING L K Sbjct: 108 TKQFSDDDHYKFINGVLSNIKK 129
>NUSB_STAAS (Q6G941) N utilization substance protein B homolog (Protein nusB)| Length = 129 Score = 51.2 bits (121), Expect = 2e-06 Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 2/82 (2%) Frame = +1 Query: 235 VASGWDQHVEVINKIIPQHWKDEPVARILEL--CILHIAMAEMTSKGTPHKVAINEAVDL 408 + SG H V+++ I + KD +AR+L+ IL +A E+ TP KV +NEAV+L Sbjct: 48 LVSGVKDHEPVLDETISPYLKDWTIARLLKTDRIILRMATYEILHSDTPAKVVMNEAVEL 107 Query: 409 AKRFCDGGAPRVINGCLRTYVK 474 K+F D + ING L K Sbjct: 108 TKQFSDDDHYKFINGVLSNIKK 129
>NUSB_STAAN (P65578) N utilization substance protein B homolog (Protein nusB)| Length = 129 Score = 51.2 bits (121), Expect = 2e-06 Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 2/82 (2%) Frame = +1 Query: 235 VASGWDQHVEVINKIIPQHWKDEPVARILEL--CILHIAMAEMTSKGTPHKVAINEAVDL 408 + SG H V+++ I + KD +AR+L+ IL +A E+ TP KV +NEAV+L Sbjct: 48 LVSGVKDHEPVLDETISPYLKDWTIARLLKTDRIILRMATYEILHSDTPAKVVMNEAVEL 107 Query: 409 AKRFCDGGAPRVINGCLRTYVK 474 K+F D + ING L K Sbjct: 108 TKQFSDDDHYKFINGVLSNIKK 129
>NUSB_STAAM (P65577) N utilization substance protein B homolog (Protein nusB)| Length = 129 Score = 51.2 bits (121), Expect = 2e-06 Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 2/82 (2%) Frame = +1 Query: 235 VASGWDQHVEVINKIIPQHWKDEPVARILEL--CILHIAMAEMTSKGTPHKVAINEAVDL 408 + SG H V+++ I + KD +AR+L+ IL +A E+ TP KV +NEAV+L Sbjct: 48 LVSGVKDHEPVLDETISPYLKDWTIARLLKTDRIILRMATYEILHSDTPAKVVMNEAVEL 107 Query: 409 AKRFCDGGAPRVINGCLRTYVK 474 K+F D + ING L K Sbjct: 108 TKQFSDDDHYKFINGVLSNIKK 129
>NUSB_STAAC (Q5HFP7) N utilization substance protein B homolog (Protein nusB)| Length = 129 Score = 51.2 bits (121), Expect = 2e-06 Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 2/82 (2%) Frame = +1 Query: 235 VASGWDQHVEVINKIIPQHWKDEPVARILEL--CILHIAMAEMTSKGTPHKVAINEAVDL 408 + SG H V+++ I + KD +AR+L+ IL +A E+ TP KV +NEAV+L Sbjct: 48 LVSGVKDHEPVLDETISPYLKDWTIARLLKTDRIILRMATYEILHSDTPAKVVMNEAVEL 107 Query: 409 AKRFCDGGAPRVINGCLRTYVK 474 K+F D + ING L K Sbjct: 108 TKQFSDDDHYKFINGVLSNIKK 129
>NUSB_STAAR (Q6GGH4) N utilization substance protein B homolog (Protein nusB)| Length = 129 Score = 50.8 bits (120), Expect = 2e-06 Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 2/82 (2%) Frame = +1 Query: 235 VASGWDQHVEVINKIIPQHWKDEPVARILEL--CILHIAMAEMTSKGTPHKVAINEAVDL 408 + SG H V+++ I + KD +AR+L+ IL +A E+ TP KV +NEAV+L Sbjct: 48 LVSGVKDHEPVLDETISPNLKDWTIARLLKTDRIILRMATYEILHSDTPAKVVMNEAVEL 107 Query: 409 AKRFCDGGAPRVINGCLRTYVK 474 K+F D + ING L K Sbjct: 108 TKQFSDDDHYKFINGVLSNIKK 129
>NUSB_VIBCH (Q9KPU5) N utilization substance protein B homolog (Protein nusB)| Length = 156 Score = 50.8 bits (120), Expect = 2e-06 Identities = 40/123 (32%), Positives = 61/123 (49%), Gaps = 1/123 (0%) Frame = +1 Query: 94 VATEEEAEKLMSQNEKDSANEAEVLSAPPRLVYNNFVLRLARDMLVAVASGWDQHVEVIN 273 VAT EE + +++ AE A P + F RD+L V H E+ + Sbjct: 31 VATIEEQFLTSGKYDEEEHRAAEPALAAPETDVSYF-----RDLLAGVVLN---HNELDS 82 Query: 274 KIIPQHWKDEPVARILELCILHIAMAEMTSK-GTPHKVAINEAVDLAKRFCDGGAPRVIN 450 K+ P + ++EL +L +AM EMT + P+KV INEA++LAK F + + +N Sbjct: 83 KLRPFVSRPMQDLDMMELALLRLAMYEMTRREDVPYKVVINEAIELAKVFAAEDSHKFVN 142 Query: 451 GCL 459 G L Sbjct: 143 GVL 145
>NUSB_BACAN (Q81M49) N utilization substance protein B homolog (Protein nusB)| Length = 130 Score = 49.7 bits (117), Expect = 5e-06 Identities = 34/90 (37%), Positives = 56/90 (62%), Gaps = 4/90 (4%) Frame = +1 Query: 220 DMLVAVASGWDQHVEVINKIIPQH---WKDEPVARILELCILHIAMAEMT-SKGTPHKVA 387 + L ++ G+ ++ EVI++ I Q+ WK E ++ I++ IL +A+ EM + PH V Sbjct: 41 EFLESLVVGFVENKEVIDEAIRQNLKKWKLERIS-IVDRSILRVAVYEMKYMEEIPHNVT 99 Query: 388 INEAVDLAKRFCDGGAPRVINGCLRTYVKD 477 INEA+++AK F D + R ING L + +KD Sbjct: 100 INEAIEIAKTFGDEESRRFINGVL-SNIKD 128
>NUSB_SYNP7 (Q8GIR7) N utilization substance protein B homolog (Protein nusB)| Length = 213 Score = 49.3 bits (116), Expect = 6e-06 Identities = 29/57 (50%), Positives = 36/57 (63%) Frame = +1 Query: 292 WKDEPVARILELCILHIAMAEMTSKGTPHKVAINEAVDLAKRFCDGGAPRVINGCLR 462 W+ V R L+ IL +A AE+ GTP +VAINEAV+LA R+ D R ING LR Sbjct: 141 WQLHRVPR-LDQDILRLAAAEILFLGTPEQVAINEAVELANRYSDEEGRRFINGVLR 196
>NUSB_SYNY3 (P74395) N utilization substance protein B homolog (Protein nusB)| Length = 221 Score = 49.3 bits (116), Expect = 6e-06 Identities = 28/57 (49%), Positives = 37/57 (64%) Frame = +1 Query: 292 WKDEPVARILELCILHIAMAEMTSKGTPHKVAINEAVDLAKRFCDGGAPRVINGCLR 462 W+ +A+I + IL +A+AE+ G P KVAINEAV+LAKR+ R ING LR Sbjct: 148 WQLSRLAKI-DQDILRLAIAELDYLGVPQKVAINEAVELAKRYSGQDGHRFINGVLR 203
>NUSB_SYNEL (Q8DKS0) N utilization substance protein B homolog (Protein nusB)| Length = 212 Score = 48.1 bits (113), Expect = 1e-05 Identities = 28/67 (41%), Positives = 43/67 (64%) Frame = +1 Query: 262 EVINKIIPQHWKDEPVARILELCILHIAMAEMTSKGTPHKVAINEAVDLAKRFCDGGAPR 441 E++N+ + W+ E + + L+ I+ IA+ EM +VAINEA++LAKR+ D G+ R Sbjct: 133 ELVNRSMVD-WQLERLTQ-LDRAIIEIAVVEMRYLEVAKQVAINEAIELAKRYSDEGSHR 190 Query: 442 VINGCLR 462 ING LR Sbjct: 191 FINGVLR 197
>NUSB_BACCR (Q818R4) N utilization substance protein B homolog (Protein nusB)| Length = 130 Score = 48.1 bits (113), Expect = 1e-05 Identities = 33/90 (36%), Positives = 55/90 (61%), Gaps = 4/90 (4%) Frame = +1 Query: 220 DMLVAVASGWDQHVEVINKIIPQH---WKDEPVARILELCILHIAMAEMT-SKGTPHKVA 387 + L ++ G+ ++ E I++ I Q+ WK E ++ I++ IL +A+ EM + PH V Sbjct: 41 EFLESLVVGFVENKEAIDEAIRQNLKKWKLERIS-IVDRSILRVAVYEMKYMEEIPHNVT 99 Query: 388 INEAVDLAKRFCDGGAPRVINGCLRTYVKD 477 INEA+++AK F D + R ING L + +KD Sbjct: 100 INEAIEIAKTFGDEESRRFINGVL-SNIKD 128
>NUSB_ANASP (Q8YW56) N utilization substance protein B homolog (Protein nusB)| Length = 211 Score = 47.4 bits (111), Expect = 2e-05 Identities = 31/68 (45%), Positives = 40/68 (58%), Gaps = 2/68 (2%) Frame = +1 Query: 265 VINKIIPQHWKDEPVARILELC--ILHIAMAEMTSKGTPHKVAINEAVDLAKRFCDGGAP 438 VI++ I D V R+ ++ IL IA+AEM P+ VAINEAV+LAKR+ Sbjct: 133 VIDEQITSALVDWQVTRLAQIDRDILRIAVAEMMFFNLPNSVAINEAVELAKRYSGDEGH 192 Query: 439 RVINGCLR 462 R ING LR Sbjct: 193 RFINGVLR 200
>NUSB_WOLSU (Q7MAE9) N utilization substance protein B homolog (Protein nusB)| Length = 135 Score = 46.2 bits (108), Expect = 5e-05 Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 2/83 (2%) Frame = +1 Query: 217 RDMLVAVASGWDQHVEVINKIIPQHWKDEPVARI--LELCILHIAMAEMTSKGTPHKVAI 390 ++ + + G H+ I++ I +H K+ +RI +E IL + E+ G V I Sbjct: 43 QEFALELFDGTIAHLGEIDEEIKKHLKEWDFSRIGDMERAILRLGTFEIVYSGVDRAVII 102 Query: 391 NEAVDLAKRFCDGGAPRVINGCL 459 NEAV+L+K F + +PR +NG L Sbjct: 103 NEAVELSKTFGNDNSPRFVNGVL 125
>NUSB_BACSU (P54520) N utilization substance protein B homolog (Protein nusB)| Length = 131 Score = 46.2 bits (108), Expect = 5e-05 Identities = 27/79 (34%), Positives = 47/79 (59%), Gaps = 4/79 (5%) Frame = +1 Query: 253 QHVEVINKIIPQH---WKDEPVARILELCILHIAMAEMT-SKGTPHKVAINEAVDLAKRF 420 +H + ++++I +H WK + +A + + IL +A EM ++ P V++NEA++LAKRF Sbjct: 50 EHQDQLDEMISKHLVNWKLDRIANV-DRAILRLAAYEMAYAEDIPVNVSMNEAIELAKRF 108 Query: 421 CDGGAPRVINGCLRTYVKD 477 D A + +NG L D Sbjct: 109 GDDKATKFVNGVLSNIKSD 127
>NUSB_GLOVI (Q7NKZ0) N utilization substance protein B homolog (Protein nusB)| Length = 211 Score = 46.2 bits (108), Expect = 5e-05 Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 1/62 (1%) Frame = +1 Query: 292 WKDEPVARILELCILHIAMAEMTS-KGTPHKVAINEAVDLAKRFCDGGAPRVINGCLRTY 468 W+ E + RI + IL +A+ EM K P +VAI+EAV+LAK++ A R ING LR Sbjct: 141 WQVERLTRI-DRDILRLALVEMVELKSVPFRVAIDEAVELAKKYSTDTAVRFINGVLRRV 199 Query: 469 VK 474 V+ Sbjct: 200 VQ 201
>NUSB_ENTFA (Q836W8) N utilization substance protein B homolog (Protein nusB)| Length = 154 Score = 45.4 bits (106), Expect = 9e-05 Identities = 30/88 (34%), Positives = 52/88 (59%), Gaps = 2/88 (2%) Frame = +1 Query: 220 DMLVA-VASGWDQHVEVINKIIPQHWKDEPVARILELCILHIAMAEMTS-KGTPHKVAIN 393 D+LV V S + EVI + +W + +A+I ++ IL +A+ EM P+ VA+N Sbjct: 63 DLLVGGVCSRKAELDEVITNHLGNNWSMQRLAKI-DIVILRLAIFEMLYVSDVPNIVALN 121 Query: 394 EAVDLAKRFCDGGAPRVINGCLRTYVKD 477 EAV+L+K++ D + + +NG L +K+ Sbjct: 122 EAVELSKKYSDDRSRKFVNGVLSNVMKE 149
>NUSB_LACLA (Q9CHN4) N utilization substance protein B homolog (Protein nusB)| Length = 192 Score = 45.4 bits (106), Expect = 9e-05 Identities = 25/69 (36%), Positives = 40/69 (57%) Frame = +1 Query: 268 INKIIPQHWKDEPVARILELCILHIAMAEMTSKGTPHKVAINEAVDLAKRFCDGGAPRVI 447 I+K + + W + ++E IL ++ E+ TP VA+NEAV+L+K F D + R I Sbjct: 125 ISKYLTKTWSFSRLT-LVEQAILQVSSYEILYTETPDVVAVNEAVELSKDFSDEKSSRFI 183 Query: 448 NGCLRTYVK 474 NG L ++K Sbjct: 184 NGVLTNFLK 192
>NUSB_STRP8 (P65585) N utilization substance protein B homolog (Protein nusB)| Length = 150 Score = 43.9 bits (102), Expect = 3e-04 Identities = 27/96 (28%), Positives = 52/96 (54%), Gaps = 5/96 (5%) Frame = +1 Query: 226 LVAVASGWDQHVEVINKIIPQH----WKDEPVARILELCILHIAMAEMTS-KGTPHKVAI 390 L+++ +G + H E ++ +I H W E + + + +L + + E+ TP +VA+ Sbjct: 56 LLSLVTGVNNHKEELDNLISTHLKKGWSLERLT-LTDKTLLRLGLFEIKYFDETPDRVAL 114 Query: 391 NEAVDLAKRFCDGGAPRVINGCLRTYVKDHMSNGTS 498 NE +++AK++ D + + ING L YV + S S Sbjct: 115 NEIIEVAKKYSDETSAKFINGLLSQYVSEAPSANKS 150
>NUSB_STRP6 (Q5XA94) N utilization substance protein B homolog (Protein nusB)| Length = 150 Score = 43.9 bits (102), Expect = 3e-04 Identities = 27/96 (28%), Positives = 52/96 (54%), Gaps = 5/96 (5%) Frame = +1 Query: 226 LVAVASGWDQHVEVINKIIPQH----WKDEPVARILELCILHIAMAEMTS-KGTPHKVAI 390 L+++ +G + H E ++ +I H W E + + + +L + + E+ TP +VA+ Sbjct: 56 LLSLVTGVNNHKEELDNLISTHLKKGWSLERLT-LTDKTLLRLGLFEIKYFDETPDRVAL 114 Query: 391 NEAVDLAKRFCDGGAPRVINGCLRTYVKDHMSNGTS 498 NE +++AK++ D + + ING L YV + S S Sbjct: 115 NEIIEVAKKYSDETSAKFINGLLSQYVSEAPSANKS 150
>NUSB_STRP3 (P65584) N utilization substance protein B homolog (Protein nusB)| Length = 150 Score = 43.9 bits (102), Expect = 3e-04 Identities = 27/96 (28%), Positives = 52/96 (54%), Gaps = 5/96 (5%) Frame = +1 Query: 226 LVAVASGWDQHVEVINKIIPQH----WKDEPVARILELCILHIAMAEMTS-KGTPHKVAI 390 L+++ +G + H E ++ +I H W E + + + +L + + E+ TP +VA+ Sbjct: 56 LLSLVTGVNNHKEELDNLISTHLKKGWSLERLT-LTDKTLLRLGLFEIKYFDETPDRVAL 114 Query: 391 NEAVDLAKRFCDGGAPRVINGCLRTYVKDHMSNGTS 498 NE +++AK++ D + + ING L YV + S S Sbjct: 115 NEIIEVAKKYSDETSAKFINGLLSQYVSEAPSANKS 150
>NUSB_RHOBA (Q7USA9) N utilization substance protein B homolog (Protein nusB)| Length = 145 Score = 42.7 bits (99), Expect = 6e-04 Identities = 22/50 (44%), Positives = 30/50 (60%) Frame = +1 Query: 331 ILHIAMAEMTSKGTPHKVAINEAVDLAKRFCDGGAPRVINGCLRTYVKDH 480 +L + E+ GTP +VAI+EA+ LAKR+ +PR ING L K H Sbjct: 88 VLRLGAYEILYSGTPGQVAISEALTLAKRYGGENSPRFINGVLDRLFKYH 137
>NUSB_MYCLE (Q9CCR9) N utilization substance protein B homolog (Protein nusB)| Length = 190 Score = 42.7 bits (99), Expect = 6e-04 Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 3/121 (2%) Frame = +1 Query: 106 EEAEKLMSQNEKDSANEAEVLSAPPRLVYNNFVLRLARDMLVAVASGWDQHVEVINKIIP 285 + A L+ + E + E++ L + + V VA G +H I+++I Sbjct: 13 KRAVDLLFEAEARDLSPLEIIEVRSALAKSKLDVAPLHPYTVVVAQGVSEHTARIDELII 72 Query: 286 QHWKDEPVARI--LELCILHIAMAEMT-SKGTPHKVAINEAVDLAKRFCDGGAPRVINGC 456 H + + R+ ++ IL +++ E+ + P VA++EAV+LAK +P +NG Sbjct: 73 SHLQGWKLDRLPAVDRAILRVSIWELLYADDVPEPVAVDEAVELAKELSTDDSPGFVNGL 132 Query: 457 L 459 L Sbjct: 133 L 133
>NUSB_HELHP (Q7VK55) N utilization substance protein B homolog (Protein nusB)| Length = 157 Score = 42.7 bits (99), Expect = 6e-04 Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 3/98 (3%) Frame = +1 Query: 217 RDMLVAVASGWDQHVEVINKIIPQHWKDEPVARI--LELCILHIAMAEMTSKGTPHKVAI 390 +D ++ G +H+ I+ I + K+ +R+ +E +L + E+ T V I Sbjct: 43 QDFAFSLLQGVIEHLSQIDLCIAPYLKEWEFSRLGGMERAMLRLGAFEILYTETDTPVII 102 Query: 391 NEAVDLAKRFC-DGGAPRVINGCLRTYVKDHMSNGTSQ 501 NEAV+L K + + APR ING L K H N S+ Sbjct: 103 NEAVELGKMYGGEDNAPRFINGVLDALSKAHTKNKKSE 140
>NUSB_CLOTE (Q894G5) N utilization substance protein B homolog (Protein nusB)| Length = 153 Score = 42.4 bits (98), Expect = 8e-04 Identities = 27/88 (30%), Positives = 49/88 (55%), Gaps = 3/88 (3%) Frame = +1 Query: 220 DMLVAVASGWDQHVEVINKIIPQHWKDEPVARI--LELCILHIAMAEMT-SKGTPHKVAI 390 + L+ G +++ +V+++ I ++ K+ + R+ ++L IL + E+ S P VAI Sbjct: 64 EYLIHTLKGVEENSKVLDEHIEKYLKNWTLNRLAKVDLAILRLCSYEILFSNEVPDNVAI 123 Query: 391 NEAVDLAKRFCDGGAPRVINGCLRTYVK 474 NE V+LAK++ D +P IN L K Sbjct: 124 NEGVELAKKYGDDKSPAFINAVLDKIAK 151
>NUSB_BIFLO (Q8G817) N utilization substance protein B homolog (Protein nusB)| Length = 190 Score = 42.0 bits (97), Expect = 0.001 Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 3/83 (3%) Frame = +1 Query: 220 DMLVAVASGWDQHVEVINKIIPQHWKDEPVAR--ILELCILHIAMAEMT-SKGTPHKVAI 390 D + + G +H I+ + +H V R +++ IL IA E+ + P KVAI Sbjct: 43 DYAIEIVKGVAEHRRQIDMTLDEHSTGWKVRRMGVVDRNILRIAAWEILFTDDVPDKVAI 102 Query: 391 NEAVDLAKRFCDGGAPRVINGCL 459 +EA+ LAK CD +P I+G L Sbjct: 103 DEALALAKTLCDDDSPAFIHGLL 125
>NUSB_CLOAB (Q97HC8) N utilization substance protein B homolog (Protein nusB)| Length = 135 Score = 42.0 bits (97), Expect = 0.001 Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 3/92 (3%) Frame = +1 Query: 193 NNFVLRLARDMLVAVASGWDQHVEVINKIIPQHWKDEPVARI--LELCILHIAMAEMT-S 363 NN + L + + + G D+++E I+ I + K ++RI + + IL +A E+ Sbjct: 34 NNEIENLDFEYIERILRGIDENMEYIDSKIEESSKKWKISRISKINITILRMAAYEIFFE 93 Query: 364 KGTPHKVAINEAVDLAKRFCDGGAPRVINGCL 459 K P KV+ NEAV+LAK + + + +NG + Sbjct: 94 KDIPCKVSANEAVELAKSYAEENSFSFVNGVI 125
>NUSB_FUSNN (Q8RII1) N utilization substance protein B homolog (Protein nusB)| Length = 153 Score = 41.6 bits (96), Expect = 0.001 Identities = 32/126 (25%), Positives = 56/126 (44%) Frame = +1 Query: 97 ATEEEAEKLMSQNEKDSANEAEVLSAPPRLVYNNFVLRLARDMLVAVASGWDQHVEVINK 276 ATE +E+L + N E++ N L + + +A +D ++I K Sbjct: 32 ATESASEELKQAFDIYLQNSEELIGT-----LNENQLEFLKSSIDGIAKNYDNIKDIIKK 86 Query: 277 IIPQHWKDEPVARILELCILHIAMAEMTSKGTPHKVAINEAVDLAKRFCDGGAPRVINGC 456 Q+W E + ++E +L +A E K P +V NE ++LAK + + + +NG Sbjct: 87 NT-QNWAYERIG-VVERALLIVATYEFIFKNAPIEVIANEIIELAKEYGNEKSYEFVNGI 144 Query: 457 LRTYVK 474 L K Sbjct: 145 LANIEK 150
>NUSB_CAMJR (Q5HW85) N utilization substance protein B homolog (Protein nusB)| Length = 132 Score = 41.6 bits (96), Expect = 0.001 Identities = 19/52 (36%), Positives = 29/52 (55%) Frame = +1 Query: 319 LELCILHIAMAEMTSKGTPHKVAINEAVDLAKRFCDGGAPRVINGCLRTYVK 474 +E IL + E+ TP + INEA++LAK + +P+ ING L +K Sbjct: 78 VERAILRLGAYELLFTDTPSAIVINEAIELAKELANDNSPKFINGVLDALIK 129
>NUSB_CAMJE (Q9PIC0) N utilization substance protein B homolog (Protein nusB)| Length = 132 Score = 41.6 bits (96), Expect = 0.001 Identities = 19/52 (36%), Positives = 29/52 (55%) Frame = +1 Query: 319 LELCILHIAMAEMTSKGTPHKVAINEAVDLAKRFCDGGAPRVINGCLRTYVK 474 +E IL + E+ TP + INEA++LAK + +P+ ING L +K Sbjct: 78 VERAILRLGAYELLFTDTPSAIVINEAIELAKELANDNSPKFINGVLDALIK 129
>NUSB_STRP1 (Q99Y88) N utilization substance protein B homolog (Protein nusB)| Length = 150 Score = 41.2 bits (95), Expect = 0.002 Identities = 24/87 (27%), Positives = 48/87 (55%), Gaps = 5/87 (5%) Frame = +1 Query: 226 LVAVASGWDQHVEVINKIIPQH----WKDEPVARILELCILHIAMAEMTS-KGTPHKVAI 390 L+++ +G + H E ++ +I H W E + + + +L + + E+ TP +VA+ Sbjct: 56 LLSLVTGVNNHKEELDNLISTHLKKGWSLERLT-LTDKTLLRLGLFEIKYFDKTPDRVAL 114 Query: 391 NEAVDLAKRFCDGGAPRVINGCLRTYV 471 NE +++ K++ D + + ING L YV Sbjct: 115 NEIIEVVKKYSDETSAKFINGLLSQYV 141
>NUSB_OCEIH (Q8EQ42) N utilization substance protein B homolog (Protein nusB)| Length = 126 Score = 40.8 bits (94), Expect = 0.002 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 3/81 (3%) Frame = +1 Query: 226 LVAVASGWDQHVEVINKIIPQHWKDEPVARI--LELCILHIAMAE-MTSKGTPHKVAINE 396 L ++ G QH VI++ I H + + RI +E IL +A+ E M P V+INE Sbjct: 41 LRSLVEGVIQHKSVIDEKISTHLEKWTIDRIASVERTILRMAILEIMYIDDIPQNVSINE 100 Query: 397 AVDLAKRFCDGGAPRVINGCL 459 A++LA F D + + +NG L Sbjct: 101 AIELAHTFGDEQSGKFVNGVL 121
>NUSB_LACPL (Q88WM9) N utilization substance protein B homolog (Protein nusB)| Length = 139 Score = 40.4 bits (93), Expect = 0.003 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Frame = +1 Query: 268 INKIIPQHWKDEPVARILELCILHIAMAEMTS-KGTPHKVAINEAVDLAKRFCDGGAPRV 444 I + Q W + +A+ +L IL IA E+ P KVA+NEA++L K F D + + Sbjct: 67 IQPYLSQKWSLDRLAKT-DLIILRIAFFELQFVDDVPTKVAVNEAIELTKAFSDDRSRKF 125 Query: 445 INGCLRTYVKD 477 ++G L VK+ Sbjct: 126 VSGVLGKVVKN 136
>NUSB_SHEON (Q8EBP4) N utilization substance protein B homolog (Protein nusB)| Length = 134 Score = 40.4 bits (93), Expect = 0.003 Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 3/84 (3%) Frame = +1 Query: 217 RDMLVAVASGWDQHVEVINKIIPQHWKDEPVARI--LELCILHIAMAEMT-SKGTPHKVA 387 R++ VA+ Q E+I IP D P+ + +E I+ +A E+T K P KVA Sbjct: 49 RELFAGVATKKTQLDELI---IPH--LDRPIDEVSPVEKAIVRLAAYELTFRKDVPFKVA 103 Query: 388 INEAVDLAKRFCDGGAPRVINGCL 459 INEA++LAK F + + +NG L Sbjct: 104 INEAIELAKAFGADESHKFVNGLL 127
>NUSB_VIBFI (Q8G9G3) N utilization substance protein B homolog (Protein nusB)| Length = 155 Score = 40.0 bits (92), Expect = 0.004 Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 1/109 (0%) Frame = +1 Query: 136 EKDSANEAEVLSAPPRLVYNNFVLRLARDMLVAVASGWDQHVEVINKIIPQHWKDEPVAR 315 E+ ANE ++ + + Y RD+ VA H+++ K+ P + Sbjct: 47 EEHHANEPKLQTPETDVAY-------FRDLFSGVALN---HMKLDGKMRPYLSRPLQDLD 96 Query: 316 ILELCILHIAMAEMTSKG-TPHKVAINEAVDLAKRFCDGGAPRVINGCL 459 +EL +L +++ EM ++ P+KV INEA++LAK F + + +NG L Sbjct: 97 QMELALLRMSIYEMMNRDDVPYKVVINEAIELAKVFAAEDSHKFVNGVL 145
>NUSB_MYCTU (P95020) N utilization substance protein B homolog (Protein nusB)| Length = 156 Score = 39.7 bits (91), Expect = 0.005 Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 3/121 (2%) Frame = +1 Query: 106 EEAEKLMSQNEKDSANEAEVLSAPPRLVYNNFVLRLARDMLVAVASGWDQHVEVINKIIP 285 + A L+ + E + AEV+ L + AVA G +H I+ +I Sbjct: 15 KRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSEHAAHIDDLIT 74 Query: 286 QHWKDEPVARI--LELCILHIAMAEMT-SKGTPHKVAINEAVDLAKRFCDGGAPRVINGC 456 H + + R+ ++ IL +++ E+ + P V ++EAV LAK +P +NG Sbjct: 75 AHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELSTDDSPGFVNGV 134 Query: 457 L 459 L Sbjct: 135 L 135
>NUSB_MYCBO (Q7TYC8) N utilization substance protein B homolog (Protein nusB)| Length = 156 Score = 39.7 bits (91), Expect = 0.005 Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 3/121 (2%) Frame = +1 Query: 106 EEAEKLMSQNEKDSANEAEVLSAPPRLVYNNFVLRLARDMLVAVASGWDQHVEVINKIIP 285 + A L+ + E + AEV+ L + AVA G +H I+ +I Sbjct: 15 KRAVDLLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSEHAAHIDDLIT 74 Query: 286 QHWKDEPVARI--LELCILHIAMAEMT-SKGTPHKVAINEAVDLAKRFCDGGAPRVINGC 456 H + + R+ ++ IL +++ E+ + P V ++EAV LAK +P +NG Sbjct: 75 AHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELSTDDSPGFVNGV 134 Query: 457 L 459 L Sbjct: 135 L 135
>NUSB_SHIFL (P0A783) N utilization substance protein B (Protein nusB)| Length = 139 Score = 39.7 bits (91), Expect = 0.005 Identities = 20/48 (41%), Positives = 32/48 (66%), Gaps = 1/48 (2%) Frame = +1 Query: 319 LELCILHIAMAEMTSKG-TPHKVAINEAVDLAKRFCDGGAPRVINGCL 459 +E +L IA+ E++ + P+KVAINEA++LAK F + + +NG L Sbjct: 80 VEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127
>NUSB_SALTY (Q8ZRD3) N utilization substance protein B homolog (Protein nusB)| Length = 139 Score = 39.7 bits (91), Expect = 0.005 Identities = 20/48 (41%), Positives = 32/48 (66%), Gaps = 1/48 (2%) Frame = +1 Query: 319 LELCILHIAMAEMTSKG-TPHKVAINEAVDLAKRFCDGGAPRVINGCL 459 +E +L IA+ E++ + P+KVAINEA++LAK F + + +NG L Sbjct: 80 VEKAVLRIALFELSKRSDVPYKVAINEAIELAKTFGAEDSHKFVNGVL 127
>NUSB_SALTI (Q8Z8X6) N utilization substance protein B homolog (Protein nusB)| Length = 139 Score = 39.7 bits (91), Expect = 0.005 Identities = 20/48 (41%), Positives = 32/48 (66%), Gaps = 1/48 (2%) Frame = +1 Query: 319 LELCILHIAMAEMTSKG-TPHKVAINEAVDLAKRFCDGGAPRVINGCL 459 +E +L IA+ E++ + P+KVAINEA++LAK F + + +NG L Sbjct: 80 VEKAVLRIALFELSKRSDVPYKVAINEAIELAKTFGAEDSHKFVNGVL 127
>NUSB_ECOLI (P0A780) N utilization substance protein B (Protein nusB)| Length = 139 Score = 39.7 bits (91), Expect = 0.005 Identities = 20/48 (41%), Positives = 32/48 (66%), Gaps = 1/48 (2%) Frame = +1 Query: 319 LELCILHIAMAEMTSKG-TPHKVAINEAVDLAKRFCDGGAPRVINGCL 459 +E +L IA+ E++ + P+KVAINEA++LAK F + + +NG L Sbjct: 80 VEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127
>NUSB_ECOL6 (P0A781) N utilization substance protein B (Protein nusB)| Length = 139 Score = 39.7 bits (91), Expect = 0.005 Identities = 20/48 (41%), Positives = 32/48 (66%), Gaps = 1/48 (2%) Frame = +1 Query: 319 LELCILHIAMAEMTSKG-TPHKVAINEAVDLAKRFCDGGAPRVINGCL 459 +E +L IA+ E++ + P+KVAINEA++LAK F + + +NG L Sbjct: 80 VEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127
>NUSB_ECO57 (P0A782) N utilization substance protein B (Protein nusB)| Length = 139 Score = 39.7 bits (91), Expect = 0.005 Identities = 20/48 (41%), Positives = 32/48 (66%), Gaps = 1/48 (2%) Frame = +1 Query: 319 LELCILHIAMAEMTSKG-TPHKVAINEAVDLAKRFCDGGAPRVINGCL 459 +E +L IA+ E++ + P+KVAINEA++LAK F + + +NG L Sbjct: 80 VEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127
>NUSB_YERPE (Q8ZC42) N utilization substance protein B homolog (Protein nusB)| Length = 138 Score = 39.3 bits (90), Expect = 0.006 Identities = 20/48 (41%), Positives = 32/48 (66%), Gaps = 1/48 (2%) Frame = +1 Query: 319 LELCILHIAMAEMTSKG-TPHKVAINEAVDLAKRFCDGGAPRVINGCL 459 +E +L IA+ E++ + P+KVAINEA++LAK F + + +NG L Sbjct: 80 VERAVLRIALFELSKRDDVPYKVAINEAIELAKTFGAEDSHKFVNGVL 127
>NUSB_PHOLL (Q7N0J0) N utilization substance protein B homolog (Protein nusB)| Length = 138 Score = 39.3 bits (90), Expect = 0.006 Identities = 22/48 (45%), Positives = 32/48 (66%), Gaps = 1/48 (2%) Frame = +1 Query: 319 LELCILHIAMAEMTSKG-TPHKVAINEAVDLAKRFCDGGAPRVINGCL 459 +E IL IAM E++ + P+KVAINEA++LAK F + + +NG L Sbjct: 80 VEKAILRIAMFELSYRDDVPYKVAINEAIELAKVFGAEDSHKFVNGVL 127
>NUSB_LEPIN (Q8F8T8) N utilization substance protein B homolog (Protein nusB)| Length = 138 Score = 39.3 bits (90), Expect = 0.006 Identities = 27/94 (28%), Positives = 52/94 (55%), Gaps = 3/94 (3%) Frame = +1 Query: 217 RDMLVAVASGWDQHVEVINKIIPQHWKDEPVARI--LELCILHIAM-AEMTSKGTPHKVA 387 RD V++ +G ++ E I+ +I ++ K+ +RI + IL +++ A + + P V Sbjct: 43 RDFAVSIVNGVVKNQEQIDTLIKKYSKNWDFSRISIVNKAILRLSIYALLYTWEVPKNVT 102 Query: 388 INEAVDLAKRFCDGGAPRVINGCLRTYVKDHMSN 489 I+EAV+L K F + R +NG L +K+ + + Sbjct: 103 IDEAVELTKEFESEESARFVNGVLDAILKNEIKS 136
>NUSB_LEPIC (Q72V97) N utilization substance protein B homolog (Protein nusB)| Length = 138 Score = 39.3 bits (90), Expect = 0.006 Identities = 27/94 (28%), Positives = 52/94 (55%), Gaps = 3/94 (3%) Frame = +1 Query: 217 RDMLVAVASGWDQHVEVINKIIPQHWKDEPVARI--LELCILHIAM-AEMTSKGTPHKVA 387 RD V++ +G ++ E I+ +I ++ K+ +RI + IL +++ A + + P V Sbjct: 43 RDFAVSIVNGVVKNQEQIDTLIKKYSKNWDFSRISIVNKAILRLSIYALLYTWEVPKNVT 102 Query: 388 INEAVDLAKRFCDGGAPRVINGCLRTYVKDHMSN 489 I+EAV+L K F + R +NG L +K+ + + Sbjct: 103 IDEAVELTKEFESEESARFVNGVLDAILKNEIKS 136
>NUSB_CLOPE (Q8XJD6) N utilization substance protein B homolog (Protein nusB)| Length = 135 Score = 39.3 bits (90), Expect = 0.006 Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 4/82 (4%) Frame = +1 Query: 244 GWDQHVEVINKIIPQH---WKDEPVARILELCILHIAMAEMT-SKGTPHKVAINEAVDLA 411 G +++ E ++ +I WK ++++ L IL I+ E+ ++ P KV+INEA++L Sbjct: 53 GIEENKEKLDSLIESQLVKWKLNRISKV-NLSILRISTYEILFAEDVPGKVSINEAIELC 111 Query: 412 KRFCDGGAPRVINGCLRTYVKD 477 K++ D + ING L K+ Sbjct: 112 KKYSDNKSVSFINGVLDKVYKN 133
>NUSB_BACHD (Q9K965) N utilization substance protein B homolog (Protein nusB)| Length = 134 Score = 38.9 bits (89), Expect = 0.008 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 3/85 (3%) Frame = +1 Query: 214 ARDMLVAVASGWDQHVEVINKIIPQHWKDEPVARI--LELCILHIAMAEMTS-KGTPHKV 384 A + + SG H E ++++ H + V RI ++ IL +A+ E+ P V Sbjct: 38 ASSFMSDLVSGTVTHQEELDRLYADHLQGWTVDRIGNVDRAILRMALYELYYVDDIPKNV 97 Query: 385 AINEAVDLAKRFCDGGAPRVINGCL 459 + NEA++LAK F A R ING L Sbjct: 98 SFNEAIELAKAFGGEDAGRFINGVL 122
>NUSB_PSEAE (Q9HWX6) N utilization substance protein B homolog (Protein nusB)| Length = 159 Score = 38.5 bits (88), Expect = 0.011 Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 3/57 (5%) Frame = +1 Query: 298 DEPVARI--LELCILHIAMAEMTSK-GTPHKVAINEAVDLAKRFCDGGAPRVINGCL 459 D P+A I +EL IL ++ E+ ++ P+KV INE ++LAK F + +NG L Sbjct: 86 DRPLAEIDPVELAILRLSTYELRNRIDVPYKVVINEGIELAKTFGATDGHKFVNGVL 142
>NUSB_BLOFL (Q7VRI1) N utilization substance protein B homolog (Protein nusB)| Length = 138 Score = 38.5 bits (88), Expect = 0.011 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%) Frame = +1 Query: 319 LELCILHIAMAEMTSK-GTPHKVAINEAVDLAKRFCDGGAPRVINGCLRTYVKDHMSNG 492 +E +L IA+ E+T P+KV INEA++LAK F + + ING L + + + G Sbjct: 80 IEYSVLLIALFELTQCCDVPYKVVINEAIELAKIFGSEKSHKFINGVLDKIITEKLYKG 138
>NUSB_STRMU (Q8DSE9) N utilization substance protein B homolog (Protein nusB)| Length = 142 Score = 38.1 bits (87), Expect = 0.014 Identities = 17/53 (32%), Positives = 34/53 (64%), Gaps = 1/53 (1%) Frame = +1 Query: 316 ILELCILHIAMAEMT-SKGTPHKVAINEAVDLAKRFCDGGAPRVINGCLRTYV 471 +++ +L + + E+ K TP +VA+NE +++AK++ D + + ING L +V Sbjct: 86 LIDKSLLRLGLYEIKYHKETPERVALNEIIEIAKKYSDEKSSKFINGVLSQFV 138
>NUSB_CHLTE (Q8KBS4) N utilization substance protein B homolog (Protein nusB)| Length = 164 Score = 38.1 bits (87), Expect = 0.014 Identities = 26/81 (32%), Positives = 47/81 (58%), Gaps = 4/81 (4%) Frame = +1 Query: 262 EVINKIIPQHWKDEPVARI--LELCILHIAMAEMT-SKGTPHKVAINEAVDLAKRFCD-G 429 E I++ I +H + ++RI ++ IL +A+AE+ + P KV+INEA+++AK+F Sbjct: 60 EEIDRYIAKHTFNWDMSRIAIIDKNILRMALAEILYCEDIPPKVSINEAIEIAKKFSSTD 119 Query: 430 GAPRVINGCLRTYVKDHMSNG 492 + + +NG L D + G Sbjct: 120 KSSKFVNGILDAIFNDMKAEG 140
>NUSB_STRA5 (P65581) N utilization substance protein B homolog (Protein nusB)| Length = 144 Score = 37.7 bits (86), Expect = 0.019 Identities = 21/87 (24%), Positives = 48/87 (55%), Gaps = 5/87 (5%) Frame = +1 Query: 226 LVAVASGWDQHVEVINKIIPQH----WKDEPVARILELCILHIAMAEMTS-KGTPHKVAI 390 L+ + +G H + ++ +I H W E + +++ +L + + E+ TP +VA+ Sbjct: 55 LLNLVNGVVDHKDELDTLISSHLKSGWSLERLT-LVDKSLLRLGLYEIKYFDETPDRVAL 113 Query: 391 NEAVDLAKRFCDGGAPRVINGCLRTYV 471 NE +++AK++ D + + +NG L ++ Sbjct: 114 NEIIEIAKKYSDETSAKFVNGLLSQFI 140
>NUSB_STRA3 (P65580) N utilization substance protein B homolog (Protein nusB)| Length = 144 Score = 37.7 bits (86), Expect = 0.019 Identities = 21/87 (24%), Positives = 48/87 (55%), Gaps = 5/87 (5%) Frame = +1 Query: 226 LVAVASGWDQHVEVINKIIPQH----WKDEPVARILELCILHIAMAEMTS-KGTPHKVAI 390 L+ + +G H + ++ +I H W E + +++ +L + + E+ TP +VA+ Sbjct: 55 LLNLVNGVVDHKDELDTLISSHLKSGWSLERLT-LVDKSLLRLGLYEIKYFDETPDRVAL 113 Query: 391 NEAVDLAKRFCDGGAPRVINGCLRTYV 471 NE +++AK++ D + + +NG L ++ Sbjct: 114 NEIIEIAKKYSDETSAKFVNGLLSQFI 140
>CHIC1_MOUSE (Q8CBW7) Cysteine-rich hydrophobic domain 1 protein (Brain X-linked| protein) Length = 227 Score = 37.7 bits (86), Expect = 0.019 Identities = 24/81 (29%), Positives = 37/81 (45%) Frame = +1 Query: 4 EXEXESLAMFSTRXCVQSYNFMSFCGGPLEVATEEEAEKLMSQNEKDSANEAEVLSAPPR 183 E E E+ S+ S + S GP E +EE E+ + E+D E E + PPR Sbjct: 18 EEEEEAATSSSSPSSSPSSSSSSSVSGPDEDEEDEEEEEEEDEEEEDEEEEEEEVPPPPR 77 Query: 184 LVYNNFVLRLARDMLVAVASG 246 +V + R A D ++ +G Sbjct: 78 VVSEEHLRRYAPDPVLVRGAG 98
>NUSB_AQUAE (O66530) N utilization substance protein B homolog (Protein nusB)| Length = 148 Score = 37.4 bits (85), Expect = 0.025 Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 4/87 (4%) Frame = +1 Query: 253 QHVEVINKIIPQHWKDEPVARI--LELCILHIAMAEMT--SKGTPHKVAINEAVDLAKRF 420 +H+E I+ II +H K + R+ +E L + +AE+ P +V I + VDL K++ Sbjct: 56 RHIEEIDSIIEKHLKGWSIDRLGYVERNALRLGVAELIFLKSKEPGRVFI-DIVDLVKKY 114 Query: 421 CDGGAPRVINGCLRTYVKDHMSNGTSQ 501 D A + +NG L K ++++ + Sbjct: 115 ADEKAGKFVNGVLSAIYKAYITSSKEE 141
>NUSB_THEMA (Q9X286) N utilization substance protein B homolog (Protein nusB)| Length = 142 Score = 36.2 bits (82), Expect = 0.055 Identities = 21/82 (25%), Positives = 47/82 (57%), Gaps = 3/82 (3%) Frame = +1 Query: 244 GWDQHVEVINKIIPQHWKDEPVAR--ILELCILHIAMAEMT-SKGTPHKVAINEAVDLAK 414 G +++ +I+ +I ++ + + R +++ +L +A E+ K P +V I+EA+++AK Sbjct: 53 GIKENLSMIDDLISRYLEKWSLNRLSVVDRNVLRLATYELLFEKDIPIEVTIDEAIEIAK 112 Query: 415 RFCDGGAPRVINGCLRTYVKDH 480 R+ + + +NG L K+H Sbjct: 113 RYGTENSGKFVNGILDRIAKEH 134
>NUSB_BUCAP (Q8K9A2) N utilization substance protein B homolog (Protein nusB)| Length = 138 Score = 35.8 bits (81), Expect = 0.071 Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Frame = +1 Query: 319 LELCILHIAMAEMTS-KGTPHKVAINEAVDLAKRFCDGGAPRVINGCL 459 +E IL I+ E+ K P+KV+INE ++LAK F + + ING L Sbjct: 82 IEKAILRISFYELYKRKDIPYKVSINEGIELAKLFGSEDSHKFINGVL 129
>NUSB_BUCAI (P57535) N utilization substance protein B homolog (Protein nusB)| Length = 143 Score = 35.0 bits (79), Expect = 0.12 Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Frame = +1 Query: 319 LELCILHIAMAEMTSKGT-PHKVAINEAVDLAKRFCDGGAPRVINGCL 459 +E IL I+ E+ + P+KV+INE ++LAK F + + ING L Sbjct: 80 IERAILRISFYELHKRNDIPYKVSINEGIELAKLFGSEDSHKFINGVL 127
>NUSB_DEIRA (Q9RSQ7) N utilization substance protein B homolog (Protein nusB)| Length = 192 Score = 34.7 bits (78), Expect = 0.16 Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 3/78 (3%) Frame = +1 Query: 235 VASGWDQHVEVINKIIPQH---WKDEPVARILELCILHIAMAEMTSKGTPHKVAINEAVD 405 + +G ++H E I+ ++ + W + +A+ +L +L +A E+ PH I AV Sbjct: 68 LVTGLERHREAIDDVLHRTIRGWTFDQMAQT-DLNVLRLATYELMYTPEPHPPVIESAVR 126 Query: 406 LAKRFCDGGAPRVINGCL 459 +A++F + R +NG L Sbjct: 127 IARKFGGDDSGRFVNGVL 144
>NUSB_BORPE (Q7VTN3) N utilization substance protein B homolog (Protein nusB)| Length = 154 Score = 34.7 bits (78), Expect = 0.16 Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 3/63 (4%) Frame = +1 Query: 298 DEPVARI--LELCILHIAMAE-MTSKGTPHKVAINEAVDLAKRFCDGGAPRVINGCLRTY 468 D P+A + +E IL I E M P+KVAINEAV+LAK F + +NG L Sbjct: 80 DRPLAELSPVEHGILLIGSFELMHHVEVPYKVAINEAVELAKSFGGTDGFKFVNGVLDKL 139 Query: 469 VKD 477 D Sbjct: 140 AAD 142
>NUSB_BORPA (Q7W142) N utilization substance protein B homolog (Protein nusB)| Length = 154 Score = 34.7 bits (78), Expect = 0.16 Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 3/63 (4%) Frame = +1 Query: 298 DEPVARI--LELCILHIAMAE-MTSKGTPHKVAINEAVDLAKRFCDGGAPRVINGCLRTY 468 D P+A + +E IL I E M P+KVAINEAV+LAK F + +NG L Sbjct: 80 DRPLAELSPVEHGILLIGSFELMHHVEVPYKVAINEAVELAKSFGGTDGFKFVNGVLDKL 139 Query: 469 VKD 477 D Sbjct: 140 AAD 142
>NUSB_BORBR (Q7WNT2) N utilization substance protein B homolog (Protein nusB)| Length = 154 Score = 34.7 bits (78), Expect = 0.16 Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 3/63 (4%) Frame = +1 Query: 298 DEPVARI--LELCILHIAMAE-MTSKGTPHKVAINEAVDLAKRFCDGGAPRVINGCLRTY 468 D P+A + +E IL I E M P+KVAINEAV+LAK F + +NG L Sbjct: 80 DRPLAELSPVEHGILLIGSFELMHHVEVPYKVAINEAVELAKSFGGTDGFKFVNGVLDKL 139 Query: 469 VKD 477 D Sbjct: 140 AAD 142
>NUSB_CHRVO (Q7NVF2) N utilization substance protein B homolog (Protein nusB)| Length = 149 Score = 34.7 bits (78), Expect = 0.16 Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 2/91 (2%) Frame = +1 Query: 193 NNFVLRLARDMLVAVASGWDQHVEVINKIIPQHW-KDEPVARILELCILHIAMAEMT-SK 366 N + + + ++ G + VE+++ + +++ + E +E +L +A E+T S Sbjct: 37 NEYFAKADEALFRSILYGVLKDVELLSAQVGRYYERAEDEVSPVERAVLLMAALELTQSP 96 Query: 367 GTPHKVAINEAVDLAKRFCDGGAPRVINGCL 459 TP+ V INEA+++ K F + +NG L Sbjct: 97 ETPYPVIINEAIEITKTFGGTDGHKFVNGVL 127
>NUSB_NEIMB (Q9K0D0) N utilization substance protein B homolog (Protein nusB)| Length = 141 Score = 34.3 bits (77), Expect = 0.21 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Frame = +1 Query: 262 EVINKIIPQHWKDEPVARILELCILHIAMAEMTSKG-TPHKVAINEAVDLAKRFCDGGAP 438 E I +I P +DE +E +L A E+++ TP+ V INEA+++ K F Sbjct: 60 EYIRQIRPLLDRDEKDLNPIERAVLLTACHELSAMPETPYPVIINEAIEVTKTFGGTDGH 119 Query: 439 RVINGCL 459 + +NG L Sbjct: 120 KFVNGIL 126
>NUSB_NEIMA (Q9JVD5) N utilization substance protein B homolog (Protein nusB)| Length = 141 Score = 34.3 bits (77), Expect = 0.21 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Frame = +1 Query: 262 EVINKIIPQHWKDEPVARILELCILHIAMAEMTSKG-TPHKVAINEAVDLAKRFCDGGAP 438 E I +I P +DE +E +L A E+++ TP+ V INEA+++ K F Sbjct: 60 EYIRQIRPLLDRDEKDLNPIERAVLLTACHELSAMPETPYPVIINEAIEVTKTFGGTDGH 119 Query: 439 RVINGCL 459 + +NG L Sbjct: 120 KFVNGIL 126
>NUSB_PASMU (P57868) N utilization substance protein B homolog (Protein nusB)| Length = 144 Score = 34.3 bits (77), Expect = 0.21 Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 3/68 (4%) Frame = +1 Query: 265 VINKIIPQHWKDEPVARI--LELCILHIAMAEMTSK-GTPHKVAINEAVDLAKRFCDGGA 435 V N +IP + D V+ + +E IL +A+ E+ + P+KV INEA+++AK F + Sbjct: 69 VDNIMIP--YLDREVSELDPIEKAILRLAVYELKFELDVPYKVVINEAIEVAKVFGAEDS 126 Query: 436 PRVINGCL 459 + +NG L Sbjct: 127 HKYVNGVL 134
>NUSB_HAEIN (P45150) N utilization substance protein B homolog (Protein nusB)| Length = 144 Score = 34.3 bits (77), Expect = 0.21 Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 1/48 (2%) Frame = +1 Query: 319 LELCILHIAMAEMTSK-GTPHKVAINEAVDLAKRFCDGGAPRVINGCL 459 +E IL +A+ E+ + P+KV INEA+++AK F + + ING L Sbjct: 87 IETAILRLAVYELRFELDVPYKVVINEAIEVAKVFGADESHKYINGVL 134
>NUSB_STRCO (Q9KXR0) N utilization substance protein B homolog (Protein nusB)| Length = 142 Score = 33.9 bits (76), Expect = 0.27 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 3/78 (3%) Frame = +1 Query: 235 VASGWDQHVEVINKIIPQHWKDEPVAR--ILELCILHIAMAEMT-SKGTPHKVAINEAVD 405 + G+ E I+++I Q+ D + R +++ IL + E+ TP V ++E V Sbjct: 52 LVEGYAGRAERIDELIAQYSVDWTLDRMPVVDRNILRLGAYELLWVDATPDAVVLDEMVQ 111 Query: 406 LAKRFCDGGAPRVINGCL 459 LAK F +P ING L Sbjct: 112 LAKEFSTDESPAFINGLL 129
>SYE_MYCPE (Q8EU94) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA| ligase) (GluRS) Length = 487 Score = 33.5 bits (75), Expect = 0.35 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 10/72 (13%) Frame = +1 Query: 322 ELCILHIAMAEMTSKGTPHKVAINEAVDLAKRFCDGGAPRVI----------NGCLRTYV 471 ++ I HI E TP+++AINEA+D+ K G +I N L+ ++ Sbjct: 208 DMLISHIIRGEEHLSNTPYQIAINEALDINKNIVFGHLSVIIDETGKKLSKRNMELKQFI 267 Query: 472 KDHMSNGTSQTA 507 +D+ + G S A Sbjct: 268 EDYKNMGFSPEA 279
>NUSB_XANAC (Q8PPD5) N utilization substance protein B homolog (Protein nusB)| Length = 159 Score = 33.5 bits (75), Expect = 0.35 Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 1/117 (0%) Frame = +1 Query: 112 AEKLMSQNEKDSANEAEVLSAPPRLVYNNFVLRLARDMLVAVASGWDQHVEVINKIIPQH 291 A+++++Q + A+E L+ LV VL ++ A+ D+ VE ++ I Sbjct: 42 AKQVIAQFAHEQAHEVADLAYFENLVEG--VLSNRAELDTALTPYLDRSVEEVDAI---- 95 Query: 292 WKDEPVARILELCILHIAMAEMTSK-GTPHKVAINEAVDLAKRFCDGGAPRVINGCL 459 E +L +A E+ + P++V INEA++ AKRF +NG L Sbjct: 96 ----------ERAVLRLAAYELLYRQDVPYRVVINEAIETAKRFGSEHGHTYVNGVL 142
>NUSB_LISMO (Q8Y7C6) N utilization substance protein B homolog (Protein nusB)| Length = 128 Score = 33.1 bits (74), Expect = 0.46 Identities = 15/58 (25%), Positives = 39/58 (67%), Gaps = 1/58 (1%) Frame = +1 Query: 289 HWKDEPVARILELCILHIAMAEMTS-KGTPHKVAINEAVDLAKRFCDGGAPRVINGCL 459 +W+ + ++++ +L +L +++ E+ P++V++NE++++AK + D + + ING L Sbjct: 64 NWRMDRLSKV-DLSLLRLSVYEIKYLDDVPNRVSLNESIEIAKIYSDEKSSKFINGVL 120
>NUSB_LISMF (Q71ZW3) N utilization substance protein B homolog (Protein nusB)| Length = 128 Score = 33.1 bits (74), Expect = 0.46 Identities = 15/58 (25%), Positives = 39/58 (67%), Gaps = 1/58 (1%) Frame = +1 Query: 289 HWKDEPVARILELCILHIAMAEMTS-KGTPHKVAINEAVDLAKRFCDGGAPRVINGCL 459 +W+ + ++++ +L +L +++ E+ P++V++NE++++AK + D + + ING L Sbjct: 64 NWRMDRLSKV-DLSLLRLSVYEIKYLDDVPNRVSLNESIEIAKIYSDEKSSKFINGVL 120
>NUSB_BUCBP (P59452) N utilization substance protein B homolog (Protein nusB)| Length = 144 Score = 33.1 bits (74), Expect = 0.46 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Frame = +1 Query: 319 LELCILHIAMAEMTSK-GTPHKVAINEAVDLAKRFCDGGAPRVINGCL 459 +E IL I+ E+ + P KV INE+++LAK F + + ING L Sbjct: 82 IEKAILRISFFELDKRYDIPFKVTINESIELAKLFGAKDSHKFINGVL 129
>NUSB_PSESM (Q889Q5) N utilization substance protein B homolog (Protein nusB)| Length = 165 Score = 32.7 bits (73), Expect = 0.60 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Frame = +1 Query: 319 LELCILHIAMAEMTSK-GTPHKVAINEAVDLAKRFCDGGAPRVINGCL 459 +EL IL ++ E+ + P++V INE ++LAK + + +NG L Sbjct: 101 IELAILRLSTFELLKRIDVPYRVVINEGIELAKVYGSTDGHKFVNGVL 148
>NUSB_XANCP (Q8PCM6) N utilization substance protein B homolog (Protein nusB)| Length = 159 Score = 32.7 bits (73), Expect = 0.60 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Frame = +1 Query: 319 LELCILHIAMAEMTSK-GTPHKVAINEAVDLAKRFCDGGAPRVINGCL 459 +E +L +A E+ + P++V INEA++ AKRF +NG L Sbjct: 95 IERAVLRLAAYELLYRQDVPYRVVINEAIETAKRFGSEHGHTYVNGVL 142
>NUSB_STRAW (Q827R4) N utilization substance protein B homolog (Protein nusB)| Length = 144 Score = 32.7 bits (73), Expect = 0.60 Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 3/78 (3%) Frame = +1 Query: 235 VASGWDQHVEVINKIIPQHWKDEPVAR--ILELCILHIAMAEMT-SKGTPHKVAINEAVD 405 + G+ + V I+++I Q+ + R +++ IL + E+ TP V ++EAV Sbjct: 52 LVEGYAKKVNRIDELISQYAVGWTLDRMPVVDRNILRLGTYELLWVDETPDAVVLDEAVQ 111 Query: 406 LAKRFCDGGAPRVINGCL 459 LAK F +P +NG L Sbjct: 112 LAKEFSTDDSPAFVNGLL 129
>NUSB_RALSO (Q8Y1H9) N utilization substance protein B homolog (Protein nusB)| Length = 155 Score = 32.3 bits (72), Expect = 0.79 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 3/57 (5%) Frame = +1 Query: 298 DEPVARI--LELCILHIAMAEMTS-KGTPHKVAINEAVDLAKRFCDGGAPRVINGCL 459 D PVA + +E L + E+ P+KV INEAV+LAK F + +NG L Sbjct: 83 DRPVAELSPVERAALLVGAYELVHCVDIPYKVVINEAVELAKTFGGVEGYKYVNGVL 139
>NUSB_PSEPK (Q88QH5) N utilization substance protein B homolog (Protein nusB)| Length = 166 Score = 32.3 bits (72), Expect = 0.79 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Frame = +1 Query: 319 LELCILHIAMAEMTSK-GTPHKVAINEAVDLAKRFCDGGAPRVINGCL 459 +EL +L ++ E+ + P++V INE V+LAK F + +NG L Sbjct: 102 VELAVLRLSTWELIKRVDVPYRVVINEGVELAKVFGATDGHKFVNGVL 149
>NUSB_HAEDU (Q7VNQ2) N utilization substance protein B homolog (Protein nusB)| Length = 137 Score = 32.3 bits (72), Expect = 0.79 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Frame = +1 Query: 319 LELCILHIAMAEMTSK-GTPHKVAINEAVDLAKRFCDGGAPRVINGCL 459 +E IL +A E+ + P+KV INE +++AK F + + ING L Sbjct: 80 IERTILRLATYELKYELDVPYKVVINEGIEVAKVFGSDDSHKYINGIL 127
>NUSB_CAUCR (Q9A8J3) N utilization substance protein B homolog (Protein nusB)| Length = 149 Score = 32.3 bits (72), Expect = 0.79 Identities = 21/70 (30%), Positives = 30/70 (42%) Frame = +1 Query: 268 INKIIPQHWKDEPVARILELCILHIAMAEMTSKGTPHKVAINEAVDLAKRFCDGGAPRVI 447 I K + W+ E + + A M P +V INE V++AK F +G I Sbjct: 77 IVKRLASGWRLERLDATARAVLRAGAFELMYRSDVPTEVVINEYVEIAKSFFEGPESGFI 136 Query: 448 NGCLRTYVKD 477 NG L +D Sbjct: 137 NGALDAIARD 146
>NUSB_LISIN (Q92BZ5) N utilization substance protein B homolog (Protein nusB)| Length = 128 Score = 32.0 bits (71), Expect = 1.0 Identities = 15/58 (25%), Positives = 38/58 (65%), Gaps = 1/58 (1%) Frame = +1 Query: 289 HWKDEPVARILELCILHIAMAEMTS-KGTPHKVAINEAVDLAKRFCDGGAPRVINGCL 459 +W+ + + ++ +L +L +++ E+ P++V++NE++++AK + D + + ING L Sbjct: 64 NWRIDRLNKV-DLSLLRLSVYEIKYLDDVPNRVSLNESIEIAKIYSDEKSSKFINGVL 120
>NUSB_RICCN (Q92J65) N utilization substance protein B homolog (Protein nusB)| Length = 156 Score = 30.8 bits (68), Expect = 2.3 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 4/80 (5%) Frame = +1 Query: 253 QHVEVINKIIPQHW---KDEPVARILELCILHIAMAEMT-SKGTPHKVAINEAVDLAKRF 420 +++ +++II H KD IL +L +++ E+ TP KV INE D+A Sbjct: 73 ENIHKLDEIIDNHLTNDKDPAHMPILLRALLRVSICELLFCPTTPAKVVINEYTDIANDM 132 Query: 421 CDGGAPRVINGCLRTYVKDH 480 + +N L K+H Sbjct: 133 LNEHEIGFVNSVLDKIAKEH 152
>RSMB_SYNY3 (P72943) Ribosomal RNA small subunit methyltransferase B (EC| 2.1.1.-) (rRNA (cytosine-C(5)-)-methyltransferase) Length = 446 Score = 30.0 bits (66), Expect = 3.9 Identities = 15/32 (46%), Positives = 18/32 (56%) Frame = +1 Query: 373 PHKVAINEAVDLAKRFCDGGAPRVINGCLRTY 468 P A+N VDLAK G +V+NG LR Y Sbjct: 94 PASAAVNTGVDLAKANGLKGLSKVVNGMLRRY 125
>GATA3_BRARE (Q91428) Transcription factor GATA-3 (GATA-binding factor 3)| Length = 438 Score = 29.6 bits (65), Expect = 5.1 Identities = 18/51 (35%), Positives = 23/51 (45%) Frame = -2 Query: 400 PPH*WQLCEEFLSMSSLPWQYEGCRVQGSLQQVHPSNVGELFC**LQHADP 248 PPH Q+C L SLPW +G + G P N+G L H+ P Sbjct: 71 PPHSSQMCRPSLLHGSLPW-LDGGKSIGPHHSTSPWNLGPFPKTSLHHSSP 120
>NU214_DROME (Q9W1X4) Nuclear pore complex protein Nup214 (Nucleoporin Nup214)| (214 kDa nucleoporin) (DNup214) Length = 1711 Score = 29.6 bits (65), Expect = 5.1 Identities = 18/75 (24%), Positives = 35/75 (46%) Frame = +1 Query: 52 QSYNFMSFCGGPLEVATEEEAEKLMSQNEKDSANEAEVLSAPPRLVYNNFVLRLARDMLV 231 ++Y ++ C G LE+ + E +LM+ + D + + + N LRLA+ Sbjct: 678 EAYAIVAECRGKLEIYRKPEITRLMNSSSCDPSGRRMLARLQSYVAANEAQLRLAQQ--- 734 Query: 232 AVASGWDQHVEVINK 276 V W+Q +V+ + Sbjct: 735 HVDLQWEQFQDVVRR 749
>SPON1_XENLA (P35447) Spondin-1 precursor (F-spondin)| Length = 803 Score = 29.6 bits (65), Expect = 5.1 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 2/43 (4%) Frame = -3 Query: 453 SVDHPRSTSITK--PLCQIYRLINGNFVRSSFRCHLCHGNMKD 331 S+DHP+S S+T+ P+ I R++ R +C++ N+ D Sbjct: 376 SLDHPQSPSMTRGGPIIPIARVVIERIARKGEQCNIIPDNVDD 418
>HTPX_HAEIN (P44840) Probable protease htpX homolog (EC 3.4.24.-)| Length = 283 Score = 29.6 bits (65), Expect = 5.1 Identities = 22/71 (30%), Positives = 36/71 (50%) Frame = +1 Query: 52 QSYNFMSFCGGPLEVATEEEAEKLMSQNEKDSANEAEVLSAPPRLVYNNFVLRLARDMLV 231 +S + ++ G L TE EAE +++ +N V A + V N FV+ L+R + Sbjct: 113 KSNSLVAVSTGLLNNMTEAEAEAVLAHEISHISNGDMVTMALLQGVLNTFVIFLSRVIAT 172 Query: 232 AVASGWDQHVE 264 AVAS + + E Sbjct: 173 AVASSRNNNGE 183
>LRP1_HUMAN (Q07954) Low-density lipoprotein receptor-related protein 1 precursor| (LRP) (Alpha-2-macroglobulin receptor) (A2MR) (Apolipoprotein E receptor) (APOER) (CD91 antigen) Length = 4544 Score = 29.6 bits (65), Expect = 5.1 Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 21/77 (27%) Frame = +3 Query: 186 GVQQFCVTIGPGHVSGSCQW------------MGSAC*SHQQ---------NNSPTLEG* 302 G Q C+ GHV+ SC+ + S+C + + N S T +G Sbjct: 2488 GCQDLCLLTHQGHVNCSCRGGRILQDDLTCRAVNSSCRAQDEFECANGECINFSLTCDGV 2547 Query: 303 TCCKDP*TLHPSYCHGR 353 CKD PSYC+ R Sbjct: 2548 PHCKDKSDEKPSYCNSR 2564
>CHIC1_HUMAN (Q5VXU3) Cysteine-rich hydrophobic domain 1 protein (Brain X-linked| protein) Length = 224 Score = 29.3 bits (64), Expect = 6.7 Identities = 15/48 (31%), Positives = 24/48 (50%) Frame = +1 Query: 103 EEEAEKLMSQNEKDSANEAEVLSAPPRLVYNNFVLRLARDMLVAVASG 246 EEE E+ + E++ E E PPR+V + R A D ++ +G Sbjct: 48 EEEEEEEEEEEEEEEEEEEEEAPPPPRVVSEEHLRRYAPDPVLVRGAG 95
>NUSB_XYLFT (Q87AS8) N utilization substance protein B homolog (Protein nusB)| Length = 157 Score = 28.9 bits (63), Expect = 8.7 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Frame = +1 Query: 319 LELCILHIAMAEMTSK-GTPHKVAINEAVDLAKRFCDGGAPRVINGCL 459 +E +L + E+ + P++V INEA+ AKRF +NG L Sbjct: 96 IERAVLRLGAYELLYRQDVPYRVVINEAIMTAKRFGSKYGHTYVNGVL 143
>NUSB_XYLFA (Q9PES3) N utilization substance protein B homolog (Protein nusB)| Length = 157 Score = 28.9 bits (63), Expect = 8.7 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Frame = +1 Query: 319 LELCILHIAMAEMTSK-GTPHKVAINEAVDLAKRFCDGGAPRVINGCL 459 +E +L + E+ + P++V INEA+ AKRF +NG L Sbjct: 96 IERAVLRLGAYELLYRQDVPYRVVINEAIMTAKRFGSKYGHTYVNGVL 143
>HTPX_HAEDU (Q7VNX2) Probable protease htpX homolog (EC 3.4.24.-)| Length = 289 Score = 28.9 bits (63), Expect = 8.7 Identities = 22/86 (25%), Positives = 42/86 (48%) Frame = +1 Query: 1 HEXEXESLAMFSTRXCVQSYNFMSFCGGPLEVATEEEAEKLMSQNEKDSANEAEVLSAPP 180 H + + A +T+ + + ++ G L+ TE+EAE +++ AN V Sbjct: 105 HSADVNAFATGATK----NNSLVAVSTGLLDNMTEDEAEAVVAHEIAHIANGDMVTMTLL 160 Query: 181 RLVYNNFVLRLARDMLVAVASGWDQH 258 + V N FV+ L+R + AV+ D++ Sbjct: 161 QGVLNTFVIFLSRMISTAVSGSRDEN 186
>NUSB_TREPA (O83979) N utilization substance protein B homolog (Protein nusB)| Length = 141 Score = 28.9 bits (63), Expect = 8.7 Identities = 17/63 (26%), Positives = 30/63 (47%) Frame = +1 Query: 286 QHWKDEPVARILELCILHIAMAEMTSKGTPHKVAINEAVDLAKRFCDGGAPRVINGCLRT 465 +HW + ++ + + A + + K P V I+EAV +A+ F + R +NG L Sbjct: 77 EHWDFVRLNKVDKAILRLSAYSLLFQKDIPPVVVIHEAVSIARDFGTDDSFRFVNGVLDN 136 Query: 466 YVK 474 K Sbjct: 137 IAK 139
>CAZA1_HUMAN (P52907) F-actin capping protein alpha-1 subunit (CapZ alpha-1)| Length = 286 Score = 28.9 bits (63), Expect = 8.7 Identities = 17/36 (47%), Positives = 17/36 (47%), Gaps = 3/36 (8%) Frame = +1 Query: 394 EAVDLAKRFCDGGAPRVINGC---LRTYVKDHMSNG 492 EA D DGG C LR YVKDH SNG Sbjct: 104 EASDPQPEEADGGLKSWRESCDSALRAYVKDHYSNG 139
>PUR7_STRAW (Q82FV6) Phosphoribosylaminoimidazole-succinocarboxamide synthase| (EC 6.3.2.6) (SAICAR synthetase) Length = 299 Score = 28.9 bits (63), Expect = 8.7 Identities = 15/43 (34%), Positives = 22/43 (51%) Frame = +1 Query: 196 NFVLRLARDMLVAVASGWDQHVEVINKIIPQHWKDEPVARILE 324 +F + RD L + SGWD+ E +PQH D A+ +E Sbjct: 246 SFDKQFVRDWLTSPESGWDRKSEQPPPPLPQHVVDATRAKYVE 288 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.317 0.131 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,292,863 Number of Sequences: 219361 Number of extensions: 1375682 Number of successful extensions: 3920 Number of sequences better than 10.0: 105 Number of HSP's better than 10.0 without gapping: 3771 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3914 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3869946934 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
