>ROGF2_ARATH (Q9LQ89) Rop guanine nucleotide exchange factor 2 (RopGEF2)|
          Length = 516

 Score = 95.5 bits (236), Expect = 3e-20
 Identities = 56/117 (47%), Positives = 69/117 (58%), Gaps = 3/117 (2%)
 Frame = +3

Query: 3   ASVYVWRRRVPAKPVNGLGRTASARSWSMVKDMLM---DSXXXXXXXXXXXXXXICLKQR 173
           AS+Y WRR+             S  SW+MVKD++     S               CLKQR
Sbjct: 408 ASMYTWRRKACLNN--------SKSSWNMVKDLMSITERSDKNYVLAERAESLLFCLKQR 459

Query: 174 FPALTQTSLDMSKIQYNKDVGKSILESYSRVLESLASNIVARIDDLLNIDELNRHVE 344
           +P L+QTSLD+ KI  NKDVGK++LESYSRVLE LA NIVA IDD+L +D+  R  E
Sbjct: 460 YPELSQTSLDICKIHCNKDVGKAVLESYSRVLEGLAFNIVAWIDDVLYVDKTMRGEE 516

>ROGF1_ARATH (Q93ZY2) Rop guanine nucleotide exchange factor 1 (RopGEF1) (Kinase|
           partner protein-like) (KPP-like)
          Length = 548

 Score = 90.5 bits (223), Expect = 9e-19
 Identities = 54/116 (46%), Positives = 71/116 (61%), Gaps = 5/116 (4%)
 Frame = +3

Query: 3   ASVYVWRRRVPAKPVNGLGRTASAR----SWS-MVKDMLMDSXXXXXXXXXXXXXXICLK 167
           A+V+VWR++      NG      A+    SW   VK ++ D+                L+
Sbjct: 347 AAVHVWRQK------NGRRHKKQAKLKLSSWGGKVKGLVNDNERNDFLVQRAETLLQSLR 400

Query: 168 QRFPALTQTSLDMSKIQYNKDVGKSILESYSRVLESLASNIVARIDDLLNIDELNR 335
            RFP L QT+LDM+KIQYNKDVG+SILESYSRV+ES+A NI ARIDD+L +D+  R
Sbjct: 401 IRFPGLPQTTLDMNKIQYNKDVGQSILESYSRVMESMAFNITARIDDVLYVDDAMR 456

>SMBP2_MOUSE (P40694) DNA-binding protein SMUBP-2 (EC 3.6.1.-) (ATP-dependent|
           helicase IGHMBP2) (Immunoglobulin mu-binding protein 2)
           (SMUBP-2) (Cardiac transcription factor 1) (CATF1)
          Length = 993

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
 Frame = +2

Query: 83  EHGE-----RHVDGFREEXXXXXXSRGPLDMPEAEVPCTDADKPGHEQNPVQQGRGQVDL 247
           EHGE      ++D    E      S+G   +P+ + P T   KP  +Q   Q+ R     
Sbjct: 631 EHGEVRTAFEYLDDIVPENYTHEGSQGHSRVPKPKCPSTSIRKPASDQESGQETRAAPRH 690

Query: 248 GELLEGSREPG 280
           G      + PG
Sbjct: 691 GRRKPSEKPPG 701

>HTPG_FRATT (Q5NHT8) Chaperone protein htpG (Heat shock protein htpG) (High|
           temperature protein G)
          Length = 628

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 19/72 (26%), Positives = 34/72 (47%)
 Frame = +3

Query: 162 LKQRFPALTQTSLDMSKIQYNKDVGKSILESYSRVLESLASNIVARIDDLLNIDELNRHV 341
           L  ++     TS+ M K++Y+KD  +++ + Y  V  + A  I  R  D +  +E     
Sbjct: 195 LVNKYSDCINTSIQMKKVEYDKDGKQTVKDEYETVNNTKA--IWLRSKDEVTDEEYQEFY 252

Query: 342 EQLSTGEADLKM 377
           + +S   AD  M
Sbjct: 253 KYISHDFADALM 264

>PARP1_BOVIN (P18493) Poly [ADP-ribose] polymerase 1 (EC 2.4.2.30) (PARP-1)|
           (ADPRT) (NAD(+) ADP-ribosyltransferase 1)
           (Poly[ADP-ribose] synthetase 1)
          Length = 1015

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 17/67 (25%), Positives = 32/67 (47%)
 Frame = +3

Query: 177 PALTQTSLDMSKIQYNKDVGKSILESYSRVLESLASNIVARIDDLLNIDELNRHVEQLST 356
           P      L + K+  NKD  K+ +E     L   A+     I     +D+LN+ +E++  
Sbjct: 390 PLSNMKILTLGKLSQNKDEVKATIEKLGGKLTGTANKASLCISTKKEVDKLNKKMEEVK- 448

Query: 357 GEADLKM 377
            EA++++
Sbjct: 449 -EANIRV 454

>KDPD_CLOAB (P94608) Sensor protein kdpD (EC 2.7.13.3)|
          Length = 900

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 347 LLHVPVQLVDVEKVVDARDDVRSQALENPRVALQDRLAH 231
           L  +PV+ +D + V+    DV    L  P + L D LAH
Sbjct: 79  LPQIPVKNIDYKGVILREFDVDKALLRKPEIILVDELAH 117

>IPPK_USTMA (Q4P4C1) Inositol-pentakisphosphate 2-kinase (EC 2.7.1.-)|
           (Inositol-1,3,4,5,6-pentakisphosphate 2-kinase)
           (Ins(1,3,4,5,6)P5 2-kinase) (InsP5 2-kinase)
          Length = 534

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 20/94 (21%), Positives = 42/94 (44%), Gaps = 21/94 (22%)
 Frame = +3

Query: 180 ALTQTSLDMSKIQYNKDVGKSILESYS---------------------RVLESLASNIVA 296
           +++ + +D S+ +Y+ + GK++L S+                      R+ +SL S   +
Sbjct: 78  SISISDIDPSEWKYHAEGGKNVLLSFDPVGGIQAGKSPFATLTCTYALRIPKSLPSKSES 137

Query: 297 RIDDLLNIDELNRHVEQLSTGEADLKMACGRVVV 398
             +D    ++  RHV Q   G+A +   C R+ +
Sbjct: 138 NQEDEQEAEQFTRHVVQPLLGDATVLPKCMRIPI 171

>CL190_DROME (Q9VJE5) Restin homolog (Cytoplasmic linker protein 190)|
            (Microtubule-binding protein 190) (d-CLIP-190)
          Length = 1690

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
 Frame = -2

Query: 329  QLVDVEKVVDARDD---VRSQALENPRVALQDRLAHVLVVLDFAHVQACLRQCREPLLQA 159
            QL + +KV+D  DD   V+S  LE     LQ+R+         A ++  LRQ  +    A
Sbjct: 1473 QLAEYQKVIDEMDDAASVKSALLEQ----LQNRV---------AELETALRQANDAQKTA 1519

Query: 158  YQEALCSLRQQLPLL 114
            Y E    LR+QL  L
Sbjct: 1520 YLETK-ELRRQLESL 1533

>ELL_HUMAN (P55199) RNA polymerase II elongation factor ELL (Eleven-nineteen|
           lysine-rich leukemia protein)
          Length = 621

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = -2

Query: 248 QDRLAHVLVVLDFAHVQACLRQCREPLLQAYQEALCSLRQQL 123
           +DR+ H+L +  +   +  LR  ++ L QA ++AL  L QQ+
Sbjct: 208 RDRVLHLLALRPYRKAELLLRLQKDGLTQADKDALDGLLQQV 249

>GLCAP_SOYBN (P11827) Beta-conglycinin, alpha' chain precursor|
          Length = 639

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = +2

Query: 11  LRVAPEGSCETGERLRP---HRQRKVLEHGERHVD 106
           L+V  E  CE G+  RP   H +R+  +HGE+  D
Sbjct: 61  LKVEEEEECEEGQIPRPRPQHPERERQQHGEKEED 95

>ELL_MOUSE (O08856) RNA polymerase II elongation factor ELL (Eleven-nineteen|
           lysine-rich leukemia protein)
          Length = 602

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = -2

Query: 248 QDRLAHVLVVLDFAHVQACLRQCREPLLQAYQEALCSLRQQL 123
           +DR+ H+L +  +   +  LR  ++ L QA ++ L SL QQ+
Sbjct: 205 RDRVLHLLALRPYRKAELLLRLQKDGLTQADKDTLDSLLQQV 246

>LOXL1_BOVIN (Q95L39) Lysyl oxidase homolog 1 precursor (EC 1.4.3.-) (Lysyl|
           oxidase-like protein 1)
          Length = 591

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 152 LDMPEAEVPCTDADKPGHEQNPVQQGR 232
           L+ P   V  +DA  PG E+N  QQGR
Sbjct: 344 LEPPYLPVRSSDAPPPGSERNGAQQGR 370

>COBB_HALMA (Q5V341) Probable cobyrinic acid A,C-diamide synthase|
          Length = 439

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
 Frame = +2

Query: 86  HGERHVDGFREEXXXXXXSRG------PLDMPEAEVPCTDADKPGHEQNPVQQGRGQVDL 247
           HG RH DG R+         G       L++P+  +      + G +++ +      +D+
Sbjct: 150 HGGRHADGIRDALPEDLTYFGRIPPMSDLEIPDRHLGLHMGSEAGLDRDALSTAAETIDI 209

Query: 248 GELLEGSREP 277
             L+E +R P
Sbjct: 210 ERLVETARAP 219

>RPOB1_METTH (O27124) DNA-directed RNA polymerase subunit B' (EC 2.7.7.6)|
          Length = 603

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 18/52 (34%), Positives = 21/52 (40%)
 Frame = +2

Query: 32  SCETGERLRPHRQRKVLEHGERHVDGFREEXXXXXXSRGPLDMPEAEVPCTD 187
           S E  ER  P  Q    E  E+ V G+R E          +  PEAEV   D
Sbjct: 241 SYEAAERRYPGGQEDRFEIPEKGVRGYRSESDYRHLDEDGIINPEAEVSSGD 292


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,711,914
Number of Sequences: 219361
Number of extensions: 815166
Number of successful extensions: 3075
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3074
length of database: 80,573,946
effective HSP length: 111
effective length of database: 56,224,875
effective search space used: 1349397000
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)