Clone Name | rbah11n23 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK121911.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033105P18, full insert sequence Length = 1855 Score = 357 bits (180), Expect = 3e-95 Identities = 339/392 (86%) Strand = Plus / Minus Query: 243 gccaggaaaggcttgaatgtcaacaagagcccaaggacctctgtcaggttcagcagaagg 302 |||| |||||| ||||| ||||||| ||| |||| |||||| ||||||||||| | ||| Sbjct: 1580 gccaagaaaggtttgaaggtcaacatgagtccaatgacctcagtcaggttcagtaaaaga 1521 Query: 303 aacaccatctgatcacctggaaagaacgctgcgtgctggcgcttctgtgcccacgagaat 362 ||||||||||||||||||||||| || ||||| ||||| ||||| |||||||| |||||| Sbjct: 1520 aacaccatctgatcacctggaaaaaatgctgcatgctgtcgcttttgtgcccaagagaat 1461 Query: 363 aggatacctgccccagctggagcaacagacttgaataaggacattaatgttgtggctatt 422 || | |||||| |||||||| ||||||| |||||| |||||||| ||||| |||||| Sbjct: 1460 agaacacctgcgccagctggtgcaacagccttgaacaaggacatggccgttgtagctatt 1401 Query: 423 ccatttgcagcacctctttgcccttgtggcacagcattgttttgtaggagagaagtgcca 482 || ||||||||||| | ||||||||||||||| || ||||||||||| ||||||||||| Sbjct: 1400 ccgtttgcagcaccccgttgcccttgtggcactgctttgttttgtagaagagaagtgccc 1341 Query: 483 gaaactctagttatagcaagaacgcttttaatcattgctgcaatatagagagccagacca 542 | || | |||||||||||||||| ||||| |||||||||||| ||||||| |||| |||| Sbjct: 1340 gtaattatagttatagcaagaacacttttgatcattgctgcactatagagggccacacca 1281 Query: 543 agtcttattcctgacaagtgtgtcataaagggataagcagcaataattggtatagacagg 602 |||||||||||||| ||||| |||||||||||||||||||||||||| |||||||| || Sbjct: 1280 agtcttattcctgataagtgcgtcataaagggataagcagcaataatcggtatagatagt 1221 Query: 603 gcagatgcgatgcgggttgagtttacaggtcc 634 | || || |||||||||||||| | |||||| Sbjct: 1220 accgacgcaatgcgggttgagttgataggtcc 1189
>dbj|AK066565.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013072J11, full insert sequence Length = 1343 Score = 349 bits (176), Expect = 7e-93 Identities = 338/392 (86%) Strand = Plus / Minus Query: 243 gccaggaaaggcttgaatgtcaacaagagcccaaggacctctgtcaggttcagcagaagg 302 |||| |||||| ||||| ||||||| ||| |||| ||| || ||||||||||| | ||| Sbjct: 1088 gccaagaaaggtttgaaggtcaacatgagtccaatgacttcagtcaggttcagtaaaaga 1029 Query: 303 aacaccatctgatcacctggaaagaacgctgcgtgctggcgcttctgtgcccacgagaat 362 ||||||||||||||||||||||| || ||||| ||||| ||||| |||||||| |||||| Sbjct: 1028 aacaccatctgatcacctggaaaaaatgctgcatgctgtcgcttttgtgcccaagagaat 969 Query: 363 aggatacctgccccagctggagcaacagacttgaataaggacattaatgttgtggctatt 422 || | |||||| |||||||| ||||||| |||||| |||||||| ||||| |||||| Sbjct: 968 agaacacctgcgccagctggtgcaacagccttgaacaaggacatggccgttgtagctatt 909 Query: 423 ccatttgcagcacctctttgcccttgtggcacagcattgttttgtaggagagaagtgcca 482 || ||||||||||| | ||||||||||||||| || ||||||||||| ||||||||||| Sbjct: 908 ccgtttgcagcaccccgttgcccttgtggcactgctttgttttgtagaagagaagtgccc 849 Query: 483 gaaactctagttatagcaagaacgcttttaatcattgctgcaatatagagagccagacca 542 | || | |||||||||||||||| ||||| |||||||||||| ||||||| |||| |||| Sbjct: 848 gtaattatagttatagcaagaacacttttgatcattgctgcactatagagggccacacca 789 Query: 543 agtcttattcctgacaagtgtgtcataaagggataagcagcaataattggtatagacagg 602 |||||||||||||| ||||| |||||||||||||||||||||||||| |||||||| || Sbjct: 788 agtcttattcctgataagtgcgtcataaagggataagcagcaataatcggtatagatagt 729 Query: 603 gcagatgcgatgcgggttgagtttacaggtcc 634 | || || |||||||||||||| | |||||| Sbjct: 728 accgacgcaatgcgggttgagttgataggtcc 697
>gb|AF543419.1| Oryza sativa (japonica cultivar-group) major facilitator superfamily antiporter (mfs2) mRNA, complete cds Length = 1845 Score = 289 bits (146), Expect = 6e-75 Identities = 323/382 (84%) Strand = Plus / Minus Query: 243 gccaggaaaggcttgaatgtcaacaagagcccaaggacctctgtcaggttcagcagaagg 302 |||| |||||| ||||| || |||| |||||||| |||||| ||||| ||||| ||||| Sbjct: 1568 gccaagaaaggtttgaaggttaacatgagcccaatgacctcggtcagattcagtagaaga 1509 Query: 303 aacaccatctgatcacctggaaagaacgctgcgtgctggcgcttctgtgcccacgagaat 362 || |||||||| ||||||||||| || || | || || | ||| |||||||| || ||| Sbjct: 1508 aataccatctggtcacctggaaaaaatgccacatgttgtctcttttgtgcccaagaaaat 1449 Query: 363 aggatacctgccccagctggagcaacagacttgaataaggacattaatgttgtggctatt 422 | | ||||||||||| ||||||| || |||||| |||||||| ||||||||||||| Sbjct: 1448 ataactcctgccccagccggagcaatagccttgaacaaggacatggctgttgtggctatt 1389 Query: 423 ccatttgcagcacctctttgcccttgtggcacagcattgttttgtaggagagaagtgcca 482 |||||||||||||| | ||||||||||||||| || |||||||| || ||||| ||||| Sbjct: 1388 ccatttgcagcaccccgttgcccttgtggcactgctttgttttgcagaagagaggtgccc 1329 Query: 483 gaaactctagttatagcaagaacgcttttaatcattgctgcaatatagagagccagacca 542 | || | |||||||||||||||| ||||| |||||||||||| ||||||| || | |||| Sbjct: 1328 gtaattatagttatagcaagaacacttttgatcattgctgcactatagagggcaacacca 1269 Query: 543 agtcttattcctgacaagtgtgtcataaagggataagcagcaataattggtatagacagg 602 |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| || Sbjct: 1268 agtcttattcctgataagtgtgtcataaagggataagcagcaataattggtacagatagt 1209 Query: 603 gcagatgcgatgcgggttgagt 624 || | || ||||||||||||| Sbjct: 1208 gccgctgaaatgcgggttgagt 1187
>gb|AC138454.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0019B24, complete sequence Length = 162385 Score = 139 bits (70), Expect = 1e-29 Identities = 94/102 (92%) Strand = Plus / Plus Query: 497 agcaagaacgcttttaatcattgctgcaatatagagagccagaccaagtcttattcctga 556 ||||||||| ||||| |||||||||||| ||||||| |||| |||||||||||||||||| Sbjct: 143933 agcaagaacacttttgatcattgctgcactatagagggccacaccaagtcttattcctga 143992 Query: 557 caagtgtgtcataaagggataagcagcaataattggtataga 598 ||||| |||||||||||||||||||||||||| |||||||| Sbjct: 143993 taagtgcgtcataaagggataagcagcaataatcggtataga 144034 Score = 77.8 bits (39), Expect = 4e-11 Identities = 69/79 (87%) Strand = Plus / Plus Query: 243 gccaggaaaggcttgaatgtcaacaagagcccaaggacctctgtcaggttcagcagaagg 302 |||| |||||| ||||| ||||||| ||| |||| |||||| ||||||||||| | ||| Sbjct: 142578 gccaagaaaggtttgaaggtcaacatgagtccaatgacctcagtcaggttcagtaaaaga 142637 Query: 303 aacaccatctgatcacctg 321 ||||||||||||||||||| Sbjct: 142638 aacaccatctgatcacctg 142656 Score = 73.8 bits (37), Expect = 7e-10 Identities = 73/85 (85%) Strand = Plus / Plus Query: 368 acctgccccagctggagcaacagacttgaataaggacattaatgttgtggctattccatt 427 |||||| |||||||| ||||||| |||||| |||||||| ||||| |||||||| || Sbjct: 143331 acctgcgccagctggtgcaacagccttgaacaaggacatggccgttgtagctattccgtt 143390 Query: 428 tgcagcacctctttgcccttgtggc 452 ||||||||| | ||||||||||||| Sbjct: 143391 tgcagcaccccgttgcccttgtggc 143415 Score = 61.9 bits (31), Expect = 3e-06 Identities = 40/43 (93%) Strand = Plus / Plus Query: 552 cctgacaagtgtgtcataaagggataagcagcaataattggta 594 |||||||||||||||||||||||||||| ||| | |||||||| Sbjct: 136032 cctgacaagtgtgtcataaagggataagtagcgagaattggta 136074 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 423 ccatttgcagcacctctttg 442 |||||||||||||||||||| Sbjct: 135299 ccatttgcagcacctctttg 135318
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 139 bits (70), Expect = 1e-29 Identities = 91/98 (92%) Strand = Plus / Plus Query: 497 agcaagaacgcttttaatcattgctgcaatatagagagccagaccaagtcttattcctga 556 ||||||||| ||||| |||||||||||| ||||||| || | |||||||||||||||||| Sbjct: 1584911 agcaagaacacttttgatcattgctgcactatagagggcaacaccaagtcttattcctga 1584970 Query: 557 caagtgtgtcataaagggataagcagcaataattggta 594 ||||||||||||||||||||||||||||||||||||| Sbjct: 1584971 taagtgtgtcataaagggataagcagcaataattggta 1585008 Score = 95.6 bits (48), Expect = 2e-16 Identities = 75/84 (89%) Strand = Plus / Plus Query: 369 cctgccccagctggagcaacagacttgaataaggacattaatgttgtggctattccattt 428 ||||||||||| ||||||| || |||||| |||||||| ||||||||||||||||||| Sbjct: 1584291 cctgccccagccggagcaatagccttgaacaaggacatggctgttgtggctattccattt 1584350 Query: 429 gcagcacctctttgcccttgtggc 452 |||||||| | ||||||||||||| Sbjct: 1584351 gcagcaccccgttgcccttgtggc 1584374 Score = 79.8 bits (40), Expect = 1e-11 Identities = 43/44 (97%) Strand = Plus / Plus Query: 552 cctgacaagtgtgtcataaagggataagcagcaataattggtat 595 |||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 1568274 cctgacaagtgtgtcataaagggataagcagcaagaattggtat 1568317 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 297 agaaggaacaccatctgatcacctg 321 |||| |||||||||||||||||||| Sbjct: 1605626 agaaagaacaccatctgatcacctg 1605650 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 423 ccatttgcagcacctctttg 442 |||||||||||||||||||| Sbjct: 1567548 ccatttgcagcacctctttg 1567567
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 139 bits (70), Expect = 1e-29 Identities = 94/102 (92%) Strand = Plus / Plus Query: 497 agcaagaacgcttttaatcattgctgcaatatagagagccagaccaagtcttattcctga 556 ||||||||| ||||| |||||||||||| ||||||| |||| |||||||||||||||||| Sbjct: 1629397 agcaagaacacttttgatcattgctgcactatagagggccacaccaagtcttattcctga 1629456 Query: 557 caagtgtgtcataaagggataagcagcaataattggtataga 598 ||||| |||||||||||||||||||||||||| |||||||| Sbjct: 1629457 taagtgcgtcataaagggataagcagcaataatcggtataga 1629498 Score = 77.8 bits (39), Expect = 4e-11 Identities = 69/79 (87%) Strand = Plus / Plus Query: 243 gccaggaaaggcttgaatgtcaacaagagcccaaggacctctgtcaggttcagcagaagg 302 |||| |||||| ||||| ||||||| ||| |||| |||||| ||||||||||| | ||| Sbjct: 1628042 gccaagaaaggtttgaaggtcaacatgagtccaatgacctcagtcaggttcagtaaaaga 1628101 Query: 303 aacaccatctgatcacctg 321 ||||||||||||||||||| Sbjct: 1628102 aacaccatctgatcacctg 1628120 Score = 73.8 bits (37), Expect = 7e-10 Identities = 73/85 (85%) Strand = Plus / Plus Query: 368 acctgccccagctggagcaacagacttgaataaggacattaatgttgtggctattccatt 427 |||||| |||||||| ||||||| |||||| |||||||| ||||| |||||||| || Sbjct: 1628795 acctgcgccagctggtgcaacagccttgaacaaggacatggccgttgtagctattccgtt 1628854 Query: 428 tgcagcacctctttgcccttgtggc 452 ||||||||| | ||||||||||||| Sbjct: 1628855 tgcagcaccccgttgcccttgtggc 1628879 Score = 61.9 bits (31), Expect = 3e-06 Identities = 40/43 (93%) Strand = Plus / Plus Query: 552 cctgacaagtgtgtcataaagggataagcagcaataattggta 594 |||||||||||||||||||||||||||| ||| | |||||||| Sbjct: 1621496 cctgacaagtgtgtcataaagggataagtagcgagaattggta 1621538 Score = 44.1 bits (22), Expect = 0.59 Identities = 52/62 (83%) Strand = Plus / Plus Query: 369 cctgccccagctggagcaacagacttgaataaggacattaatgttgtggctattccattt 428 ||||| || |||||||||| | |||||| ||||||||||| || ||||||| |||||| Sbjct: 1684290 cctgctcctgctggagcaaatgccttgaagaaggacattaaagtggtggctaagccattt 1684349 Query: 429 gc 430 || Sbjct: 1684350 gc 1684351 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 297 agaaggaacaccatctgatcacctg 321 |||| |||||||||||||||||||| Sbjct: 1660331 agaaagaacaccatctgatcacctg 1660355 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 423 ccatttgcagcacctctttg 442 |||||||||||||||||||| Sbjct: 1620763 ccatttgcagcacctctttg 1620782
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 139 bits (70), Expect = 1e-29 Identities = 94/102 (92%) Strand = Plus / Plus Query: 497 agcaagaacgcttttaatcattgctgcaatatagagagccagaccaagtcttattcctga 556 ||||||||| ||||| |||||||||||| ||||||| |||| |||||||||||||||||| Sbjct: 1627118 agcaagaacacttttgatcattgctgcactatagagggccacaccaagtcttattcctga 1627177 Query: 557 caagtgtgtcataaagggataagcagcaataattggtataga 598 ||||| |||||||||||||||||||||||||| |||||||| Sbjct: 1627178 taagtgcgtcataaagggataagcagcaataatcggtataga 1627219 Score = 77.8 bits (39), Expect = 4e-11 Identities = 69/79 (87%) Strand = Plus / Plus Query: 243 gccaggaaaggcttgaatgtcaacaagagcccaaggacctctgtcaggttcagcagaagg 302 |||| |||||| ||||| ||||||| ||| |||| |||||| ||||||||||| | ||| Sbjct: 1625763 gccaagaaaggtttgaaggtcaacatgagtccaatgacctcagtcaggttcagtaaaaga 1625822 Query: 303 aacaccatctgatcacctg 321 ||||||||||||||||||| Sbjct: 1625823 aacaccatctgatcacctg 1625841 Score = 73.8 bits (37), Expect = 7e-10 Identities = 73/85 (85%) Strand = Plus / Plus Query: 368 acctgccccagctggagcaacagacttgaataaggacattaatgttgtggctattccatt 427 |||||| |||||||| ||||||| |||||| |||||||| ||||| |||||||| || Sbjct: 1626516 acctgcgccagctggtgcaacagccttgaacaaggacatggccgttgtagctattccgtt 1626575 Query: 428 tgcagcacctctttgcccttgtggc 452 ||||||||| | ||||||||||||| Sbjct: 1626576 tgcagcaccccgttgcccttgtggc 1626600 Score = 61.9 bits (31), Expect = 3e-06 Identities = 40/43 (93%) Strand = Plus / Plus Query: 552 cctgacaagtgtgtcataaagggataagcagcaataattggta 594 |||||||||||||||||||||||||||| ||| | |||||||| Sbjct: 1619217 cctgacaagtgtgtcataaagggataagtagcgagaattggta 1619259 Score = 44.1 bits (22), Expect = 0.59 Identities = 52/62 (83%) Strand = Plus / Plus Query: 369 cctgccccagctggagcaacagacttgaataaggacattaatgttgtggctattccattt 428 ||||| || |||||||||| | |||||| ||||||||||| || ||||||| |||||| Sbjct: 1682011 cctgctcctgctggagcaaatgccttgaagaaggacattaaagtggtggctaagccattt 1682070 Query: 429 gc 430 || Sbjct: 1682071 gc 1682072 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 297 agaaggaacaccatctgatcacctg 321 |||| |||||||||||||||||||| Sbjct: 1658052 agaaagaacaccatctgatcacctg 1658076 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 423 ccatttgcagcacctctttg 442 |||||||||||||||||||| Sbjct: 1618484 ccatttgcagcacctctttg 1618503
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 139 bits (70), Expect = 1e-29 Identities = 91/98 (92%) Strand = Plus / Plus Query: 497 agcaagaacgcttttaatcattgctgcaatatagagagccagaccaagtcttattcctga 556 ||||||||| ||||| |||||||||||| ||||||| || | |||||||||||||||||| Sbjct: 1584911 agcaagaacacttttgatcattgctgcactatagagggcaacaccaagtcttattcctga 1584970 Query: 557 caagtgtgtcataaagggataagcagcaataattggta 594 ||||||||||||||||||||||||||||||||||||| Sbjct: 1584971 taagtgtgtcataaagggataagcagcaataattggta 1585008 Score = 95.6 bits (48), Expect = 2e-16 Identities = 75/84 (89%) Strand = Plus / Plus Query: 369 cctgccccagctggagcaacagacttgaataaggacattaatgttgtggctattccattt 428 ||||||||||| ||||||| || |||||| |||||||| ||||||||||||||||||| Sbjct: 1584291 cctgccccagccggagcaatagccttgaacaaggacatggctgttgtggctattccattt 1584350 Query: 429 gcagcacctctttgcccttgtggc 452 |||||||| | ||||||||||||| Sbjct: 1584351 gcagcaccccgttgcccttgtggc 1584374 Score = 79.8 bits (40), Expect = 1e-11 Identities = 43/44 (97%) Strand = Plus / Plus Query: 552 cctgacaagtgtgtcataaagggataagcagcaataattggtat 595 |||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 1568274 cctgacaagtgtgtcataaagggataagcagcaagaattggtat 1568317 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 297 agaaggaacaccatctgatcacctg 321 |||| |||||||||||||||||||| Sbjct: 1605608 agaaagaacaccatctgatcacctg 1605632 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 423 ccatttgcagcacctctttg 442 |||||||||||||||||||| Sbjct: 1567548 ccatttgcagcacctctttg 1567567
>emb|BX000498.1|CNS08CDO Oryza sativa chromosome 12, . BAC OSJNBa0009F13 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 183385 Score = 139 bits (70), Expect = 1e-29 Identities = 91/98 (92%) Strand = Plus / Minus Query: 497 agcaagaacgcttttaatcattgctgcaatatagagagccagaccaagtcttattcctga 556 ||||||||| ||||| |||||||||||| ||||||| || | |||||||||||||||||| Sbjct: 40821 agcaagaacacttttgatcattgctgcactatagagggcaacaccaagtcttattcctga 40762 Query: 557 caagtgtgtcataaagggataagcagcaataattggta 594 ||||||||||||||||||||||||||||||||||||| Sbjct: 40761 taagtgtgtcataaagggataagcagcaataattggta 40724 Score = 95.6 bits (48), Expect = 2e-16 Identities = 75/84 (89%) Strand = Plus / Minus Query: 369 cctgccccagctggagcaacagacttgaataaggacattaatgttgtggctattccattt 428 ||||||||||| ||||||| || |||||| |||||||| ||||||||||||||||||| Sbjct: 41441 cctgccccagccggagcaatagccttgaacaaggacatggctgttgtggctattccattt 41382 Query: 429 gcagcacctctttgcccttgtggc 452 |||||||| | ||||||||||||| Sbjct: 41381 gcagcaccccgttgcccttgtggc 41358 Score = 79.8 bits (40), Expect = 1e-11 Identities = 43/44 (97%) Strand = Plus / Minus Query: 552 cctgacaagtgtgtcataaagggataagcagcaataattggtat 595 |||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 57458 cctgacaagtgtgtcataaagggataagcagcaagaattggtat 57415 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 297 agaaggaacaccatctgatcacctg 321 |||| |||||||||||||||||||| Sbjct: 20106 agaaagaacaccatctgatcacctg 20082 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 423 ccatttgcagcacctctttg 442 |||||||||||||||||||| Sbjct: 58184 ccatttgcagcacctctttg 58165
>gb|AF543417.1| Zea mays major facilitator superfamily antiporter (mfs2) mRNA, complete cds Length = 1629 Score = 119 bits (60), Expect = 1e-23 Identities = 102/116 (87%) Strand = Plus / Minus Query: 246 aggaaaggcttgaatgtcaacaagagcccaaggacctctgtcaggttcagcagaaggaac 305 |||||||||||||| || | || |||||| | |||||| ||||| ||||| || || ||| Sbjct: 1341 aggaaaggcttgaaggtgagcacgagcccgatgacctccgtcagattcaggagcagaaac 1282 Query: 306 accatctgatcacctggaaagaacgctgcgtgctggcgcttctgtgcccacgagaa 361 |||||||| ||||||||||||||||| || |||||||||||||||||||||||||| Sbjct: 1281 accatctggtcacctggaaagaacgcggcatgctggcgcttctgtgcccacgagaa 1226 Score = 44.1 bits (22), Expect = 0.59 Identities = 106/134 (79%) Strand = Plus / Minus Query: 447 tgtggcacagcattgttttgtaggagagaagtgccagaaactctagttatagcaagaacg 506 ||||||||||| ||||| || ||||| || ||||| | ||||| || || || || ||| Sbjct: 1140 tgtggcacagcgttgttctgcaggagcgatgtgccggtgactctggtgatggcgaggacg 1081 Query: 507 cttttaatcattgctgcaatatagagagccagaccaagtcttattcctgacaagtgtgtc 566 ||||| | ||| || || | ||||||| || |||||| |||||||| |||||| | ||| Sbjct: 1080 cttttgagcatcgccgcgacgtagagaggcacaccaagccttattcccgacaagcgcgtc 1021 Query: 567 ataaagggataagc 580 || ||||| ||||| Sbjct: 1020 atgaaggggtaagc 1007
>dbj|AK102718.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033105E18, full insert sequence Length = 2159 Score = 77.8 bits (39), Expect = 4e-11 Identities = 141/175 (80%) Strand = Plus / Minus Query: 297 agaaggaacaccatctgatcacctggaaagaacgctgcgtgctggcgcttctgtgcccac 356 |||| ||||||||||||||||||||||| ||| | || |||||||| || ||||||||| Sbjct: 1651 agaaagaacaccatctgatcacctggaaggaaggaagcatgctggcgtttttgtgcccac 1592 Query: 357 gagaataggatacctgccccagctggagcaacagacttgaataaggacattaatgttgtg 416 ||||| | || || ||||| |||||||| || | ||| || ||||||||| ||| | Sbjct: 1591 gagaacacaatgcccgcccctgctggagccactgccttaaaaaaggacattcctgtcatt 1532 Query: 417 gctattccatttgcagcacctctttgcccttgtggcacagcattgttttgtagga 471 || | ||||| ||||| |||| ||| |||| ||||||||||| |||||||||| Sbjct: 1531 gccaagccattagcagcccctcgttggtcttgaggcacagcattattttgtagga 1477
>dbj|AK100888.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023128K07, full insert sequence Length = 2465 Score = 77.8 bits (39), Expect = 4e-11 Identities = 141/175 (80%) Strand = Plus / Minus Query: 297 agaaggaacaccatctgatcacctggaaagaacgctgcgtgctggcgcttctgtgcccac 356 |||| ||||||||||||||||||||||| ||| | || |||||||| || ||||||||| Sbjct: 2067 agaaagaacaccatctgatcacctggaaggaaggaagcatgctggcgtttttgtgcccac 2008 Query: 357 gagaataggatacctgccccagctggagcaacagacttgaataaggacattaatgttgtg 416 ||||| | || || ||||| |||||||| || | ||| || ||||||||| ||| | Sbjct: 2007 gagaacacaatgcccgcccctgctggagccactgccttaaaaaaggacattcctgtcatt 1948 Query: 417 gctattccatttgcagcacctctttgcccttgtggcacagcattgttttgtagga 471 || | ||||| ||||| |||| ||| |||| ||||||||||| |||||||||| Sbjct: 1947 gccaagccattagcagcccctcgttggtcttgaggcacagcattattttgtagga 1893
>dbj|AK072447.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023109G16, full insert sequence Length = 3019 Score = 77.8 bits (39), Expect = 4e-11 Identities = 141/175 (80%) Strand = Plus / Minus Query: 297 agaaggaacaccatctgatcacctggaaagaacgctgcgtgctggcgcttctgtgcccac 356 |||| ||||||||||||||||||||||| ||| | || |||||||| || ||||||||| Sbjct: 2542 agaaagaacaccatctgatcacctggaaggaaggaagcctgctggcgtttttgtgcccac 2483 Query: 357 gagaataggatacctgccccagctggagcaacagacttgaataaggacattaatgttgtg 416 ||||| | || || ||||| |||||||| || | ||| || ||||||||| ||| | Sbjct: 2482 gagaacacaatgcccgcccctgctggagccactgccttaaaaaaggacattcctgtcatt 2423 Query: 417 gctattccatttgcagcacctctttgcccttgtggcacagcattgttttgtagga 471 || | ||||| ||||| |||| ||| |||| ||||||||||| |||||||||| Sbjct: 2422 gccaagccattagcagcccctcgttggtcttgaggcacagcattattttgtagga 2368
>dbj|AK064297.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-107-A04, full insert sequence Length = 2186 Score = 77.8 bits (39), Expect = 4e-11 Identities = 141/175 (80%) Strand = Plus / Minus Query: 297 agaaggaacaccatctgatcacctggaaagaacgctgcgtgctggcgcttctgtgcccac 356 |||| ||||||||||||||||||||||| ||| | || |||||||| || ||||||||| Sbjct: 1730 agaaagaacaccatctgatcacctggaaggaaggaagcctgctggcgtttttgtgcccac 1671 Query: 357 gagaataggatacctgccccagctggagcaacagacttgaataaggacattaatgttgtg 416 ||||| | || || ||||| |||||||| || | ||| || ||||||||| ||| | Sbjct: 1670 gagaacacaatgcccgcccctgctggagccactgccttaaaaaaggacattcctgtcatt 1611 Query: 417 gctattccatttgcagcacctctttgcccttgtggcacagcattgttttgtagga 471 || | ||||| ||||| |||| ||| |||| ||||||||||| |||||||||| Sbjct: 1610 gccaagccattagcagcccctcgttggtcttgaggcacagcattattttgtagga 1556
>dbj|AK069533.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023019M18, full insert sequence Length = 1878 Score = 61.9 bits (31), Expect = 3e-06 Identities = 40/43 (93%) Strand = Plus / Minus Query: 552 cctgacaagtgtgtcataaagggataagcagcaataattggta 594 |||||||||||||||||||||||||||| ||| | |||||||| Sbjct: 1139 cctgacaagtgtgtcataaagggataagtagcgagaattggta 1097 Score = 46.1 bits (23), Expect = 0.15 Identities = 50/59 (84%) Strand = Plus / Minus Query: 423 ccatttgcagcacctctttgcccttgtggcacagcattgttttgtaggagagaagtgcc 481 |||||||||||||||||||| | ||||| || ||||| ||||| || || |||||||| Sbjct: 1268 ccatttgcagcacctctttgactttgtgaaaccgcattattttggagtagggaagtgcc 1210
>gb|AY104766.1| Zea mays PCO117107 mRNA sequence Length = 489 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 336 tgctggcgcttctgtgcccacgagaa 361 |||||||||||||||||||||||||| Sbjct: 482 tgctggcgcttctgtgcccacgagaa 457 Score = 44.1 bits (22), Expect = 0.59 Identities = 106/134 (79%) Strand = Plus / Minus Query: 447 tgtggcacagcattgttttgtaggagagaagtgccagaaactctagttatagcaagaacg 506 ||||||||||| ||||| || ||||| || ||||| | ||||| || || || || ||| Sbjct: 371 tgtggcacagcgttgttctgcaggagcgatgtgccggtgactctggtgatggcgaggacg 312 Query: 507 cttttaatcattgctgcaatatagagagccagaccaagtcttattcctgacaagtgtgtc 566 ||||| | ||| || || | ||||||| || |||||| |||||||| |||||| | ||| Sbjct: 311 cttttgagcatcgccgcgacgtagagaggcacaccaagccttattcccgacaagcgcgtc 252 Query: 567 ataaagggataagc 580 || ||||| ||||| Sbjct: 251 atgaaggggtaagc 238
>gb|AY111591.1| Zea mays CL4001_1 mRNA sequence Length = 450 Score = 48.1 bits (24), Expect = 0.038 Identities = 30/32 (93%) Strand = Plus / Plus Query: 297 agaaggaacaccatctgatcacctggaaagaa 328 |||| |||||||||||| |||||||||||||| Sbjct: 316 agaaagaacaccatctggtcacctggaaagaa 347
>ref|XM_928487.1| PREDICTED: Homo sapiens hypothetical protein LOC645454 (LOC645454), mRNA Length = 2102 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Plus Query: 57 gttgcttgctttaggtcacagtg 79 ||||||||||||||||||||||| Sbjct: 124 gttgcttgctttaggtcacagtg 146
>gb|AC138710.5| Homo sapiens chromosome 17, clone RP11-822E23, complete sequence Length = 147089 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Plus Query: 57 gttgcttgctttaggtcacagtg 79 ||||||||||||||||||||||| Sbjct: 96081 gttgcttgctttaggtcacagtg 96103
>gb|AC123528.2| Oryza sativa chromosome 11 clone OSJNBa0078E03, complete sequence Length = 149493 Score = 44.1 bits (22), Expect = 0.59 Identities = 52/62 (83%) Strand = Plus / Plus Query: 369 cctgccccagctggagcaacagacttgaataaggacattaatgttgtggctattccattt 428 ||||| || |||||||||| | |||||| ||||||||||| || ||||||| |||||| Sbjct: 39298 cctgctcctgctggagcaaatgccttgaagaaggacattaaagtggtggctaagccattt 39357 Query: 429 gc 430 || Sbjct: 39358 gc 39359 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 297 agaaggaacaccatctgatcacctg 321 |||| |||||||||||||||||||| Sbjct: 15339 agaaagaacaccatctgatcacctg 15363
>gb|AC169378.2| Sorghum bicolor clone SB_BBc0007L02, complete sequence Length = 138518 Score = 42.1 bits (21), Expect = 2.3 Identities = 36/41 (87%) Strand = Plus / Minus Query: 392 cttgaataaggacattaatgttgtggctattccatttgcag 432 |||||| |||||||||||||| || |||| |||||||||| Sbjct: 11584 cttgaaaaaggacattaatgtagttgctaagccatttgcag 11544
>gb|AC105933.2| Homo sapiens chromosome 3 clone RP11-454I5, complete sequence Length = 175370 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 553 ctgacaagtgtgtcataaagg 573 ||||||||||||||||||||| Sbjct: 35844 ctgacaagtgtgtcataaagg 35824
>gb|AC105750.2| Homo sapiens chromosome 3 clone RP11-776K4, complete sequence Length = 166478 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 553 ctgacaagtgtgtcataaagg 573 ||||||||||||||||||||| Sbjct: 151988 ctgacaagtgtgtcataaagg 151968
>ref|NM_166069.1| Drosophila melanogaster Boundary element-associated factor of 32kD CG10159-RB, transcript variant B (BEAF-32), mRNA Length = 1544 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 482 agaaactctagttatagcaag 502 ||||||||||||||||||||| Sbjct: 55 agaaactctagttatagcaag 75
>gb|AY058711.1| Drosophila melanogaster LD44361 full length cDNA Length = 1559 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 482 agaaactctagttatagcaag 502 ||||||||||||||||||||| Sbjct: 55 agaaactctagttatagcaag 75
>gb|AC010578.5|AC010578 Drosophila melanogaster, chromosome 2R, region 51B-51C, BAC clone BACR03K23, complete sequence Length = 160346 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 482 agaaactctagttatagcaag 502 ||||||||||||||||||||| Sbjct: 47597 agaaactctagttatagcaag 47617
>gb|AE003813.3| Drosophila melanogaster chromosome 2R, section 37 of 73 of the complete sequence Length = 266851 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 482 agaaactctagttatagcaag 502 ||||||||||||||||||||| Sbjct: 139940 agaaactctagttatagcaag 139960
>emb|BX000508.1|CNS08CDY Oryza sativa chromosome 12, . BAC OJ1575_G05 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 91883 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 297 agaaggaacaccatctgatcacctg 321 |||| |||||||||||||||||||| Sbjct: 87296 agaaagaacaccatctgatcacctg 87272
>gb|AC162379.2| Mus musculus BAC clone RP23-132A15 from chromosome 12, complete sequence Length = 238126 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 tctgtcaggttttacttgta 229 |||||||||||||||||||| Sbjct: 218916 tctgtcaggttttacttgta 218897
>gb|AC136522.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0037H03, complete sequence Length = 185881 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 423 ccatttgcagcacctctttg 442 |||||||||||||||||||| Sbjct: 43964 ccatttgcagcacctctttg 43945
>gb|AC137613.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0034K10, complete sequence Length = 138925 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 423 ccatttgcagcacctctttg 442 |||||||||||||||||||| Sbjct: 130986 ccatttgcagcacctctttg 130967
>gb|AC140354.2| Mus musculus BAC clone RP24-249A13 from chromosome 12, complete sequence Length = 157998 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 gcttgctttaggtcacagtg 79 |||||||||||||||||||| Sbjct: 110331 gcttgctttaggtcacagtg 110312
>gb|AC110376.4| Mus musculus chromosome 12 clone RP23-441E7, complete sequence Length = 190516 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 gcttgctttaggtcacagtg 79 |||||||||||||||||||| Sbjct: 53534 gcttgctttaggtcacagtg 53515
>gb|AC126043.3| Mus musculus BAC clone RP24-356N5 from chromosome 13, complete sequence Length = 140207 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 aataaggacattaatgttgt 415 |||||||||||||||||||| Sbjct: 17331 aataaggacattaatgttgt 17312
>gb|AC102105.8| Mus musculus chromosome 12, clone RP23-89G24, complete sequence Length = 188853 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 tctgtcaggttttacttgta 229 |||||||||||||||||||| Sbjct: 183166 tctgtcaggttttacttgta 183185
>emb|AL158016.15| Human DNA sequence from clone RP11-479J1 on chromosome Xq11.1-13.3 Contains part of the AR gene for androgen receptor (dihydrotestosterone receptor; testicular feminization; spinal and bulbar muscular atrophy; Kennedy disease), complete sequence Length = 70663 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 471 agagaagtgccagaaactct 490 |||||||||||||||||||| Sbjct: 17114 agagaagtgccagaaactct 17095
>emb|Z99124.2|BSUB0021 Bacillus subtilis complete genome (section 21 of 21): from 4010730 to 4214630 Length = 203901 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 gaaggaacaccatctgatca 317 |||||||||||||||||||| Sbjct: 195892 gaaggaacaccatctgatca 195911
>emb|X62539.1|BSORIGS B.subtilis genes rpmH, rnpA, 50kd, gidA and gidB Length = 13605 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 298 gaaggaacaccatctgatca 317 |||||||||||||||||||| Sbjct: 7807 gaaggaacaccatctgatca 7788
>gb|AC023705.4| Drosophila melanogaster X BAC RP98-7L6 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 184796 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 408 aatgttgtggctattccatttgca 431 |||||||||||| ||||||||||| Sbjct: 111668 aatgttgtggcttttccatttgca 111645
>ref|NM_141528.1| Drosophila melanogaster CG11693-RA (CG11693), mRNA Length = 957 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 gcagcacctctttgcccttg 448 |||||||||||||||||||| Sbjct: 490 gcagcacctctttgcccttg 471
>gb|AC010973.6| Homo sapiens BAC clone RP11-148K1 from 7, complete sequence Length = 222605 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 233 ttcggggactgccaggaaag 252 |||||||||||||||||||| Sbjct: 47035 ttcggggactgccaggaaag 47054
>gb|BT023291.1| Drosophila melanogaster IP10626 full insert cDNA Length = 1303 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 429 gcagcacctctttgcccttg 448 |||||||||||||||||||| Sbjct: 444 gcagcacctctttgcccttg 463
>gb|BT023215.1| Drosophila melanogaster IP10726 full insert cDNA Length = 1302 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 429 gcagcacctctttgcccttg 448 |||||||||||||||||||| Sbjct: 444 gcagcacctctttgcccttg 463
>gb|AC009539.6|AC009539 Drosophila melanogaster, chromosome 3R, region 85A-85A, BAC clone BACR33N15, complete sequence Length = 187701 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 gcagcacctctttgcccttg 448 |||||||||||||||||||| Sbjct: 151604 gcagcacctctttgcccttg 151585
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 423 ccatttgcagcacctctttg 442 |||||||||||||||||||| Sbjct: 10659364 ccatttgcagcacctctttg 10659345
>emb|BX826657.1|CNS0A38E Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB51ZF11 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 710 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 471 agagaagtgccagaaactct 490 |||||||||||||||||||| Sbjct: 231 agagaagtgccagaaactct 250
>gb|AY141874.1| Brugia malayi 3-keto-acyl-CoA thiolase (kat-1) gene, partial cds; alt-2 gene, complete cds; and nuclear factor IA (nfa-1) gene, partial cds Length = 11725 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 575 ataagcagcaataattggta 594 |||||||||||||||||||| Sbjct: 9694 ataagcagcaataattggta 9713
>gb|AE003678.3| Drosophila melanogaster chromosome 3R, section 16 of 118 of the complete sequence Length = 244757 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 429 gcagcacctctttgcccttg 448 |||||||||||||||||||| Sbjct: 110277 gcagcacctctttgcccttg 110296
>gb|AE003449.2| Drosophila melanogaster chromosome X, section 33 of 74 of the complete sequence Length = 307201 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 408 aatgttgtggctattccatttgca 431 |||||||||||| ||||||||||| Sbjct: 111368 aatgttgtggcttttccatttgca 111391
>emb|CR846816.1| Takifugu rubripes DNA, highly conserved vertebrate non-coding sequence, element ID CNE712 Length = 110 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 423 ccatttgcagcacctctttgccct 446 |||||||| ||||||||||||||| Sbjct: 64 ccatttgcggcacctctttgccct 87
>emb|AL049631.7|HSDJ513M9 Human DNA sequence from clone RP3-513M9 on chromosome Xq22.1-22.3, complete sequence Length = 118047 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 307 ccatctgatcacctggaaag 326 |||||||||||||||||||| Sbjct: 110042 ccatctgatcacctggaaag 110061
>dbj|D26185.1|BAC180K B. subtilis DNA, 180 kilobase region of replication origin Length = 180136 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 gaaggaacaccatctgatca 317 |||||||||||||||||||| Sbjct: 55593 gaaggaacaccatctgatca 55612 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,547,842 Number of Sequences: 3902068 Number of extensions: 5547842 Number of successful extensions: 96667 Number of sequences better than 10.0: 52 Number of HSP's better than 10.0 without gapping: 52 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 96413 Number of HSP's gapped (non-prelim): 252 length of query: 678 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 655 effective length of database: 17,143,297,704 effective search space: 11228859996120 effective search space used: 11228859996120 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)