ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah11n23 |
|---|---|
| Clone Library Name | barley_pub |
>VACHT_BRARE (P59845) Probable vesicular acetylcholine transporter (VAChT)| Length = 493 Score = 33.9 bits (76), Expect = 0.47 Identities = 18/53 (33%), Positives = 27/53 (50%) Frame = -3 Query: 499 AITRVSGTSLLQNNAVPQGQRGAANGIATTLMSLFKSVAPAGAGILFSWAQKR 341 A SG +++ + + +R A GIA +S VAP GIL+ +A KR Sbjct: 151 AFADTSGIAMIADKFTEEAERSRALGIALAFISFGSLVAPPFGGILYEFAGKR 203
>VACHT_HUMAN (Q16572) Vesicular acetylcholine transporter (VAChT) (Solute| carrier family 18 member 3) Length = 532 Score = 32.0 bits (71), Expect = 1.8 Identities = 17/53 (32%), Positives = 27/53 (50%) Frame = -3 Query: 499 AITRVSGTSLLQNNAVPQGQRGAANGIATTLMSLFKSVAPAGAGILFSWAQKR 341 A SG +++ + + +R A G+A +S VAP GIL+ +A KR Sbjct: 190 AFADTSGIAMIADKYPEEPERSRALGVALAFISFGSLVAPPFGGILYEFAGKR 242
>VACHT_RAT (Q62666) Vesicular acetylcholine transporter (VAChT) (Solute| carrier family 18 member 3) (rVAT) Length = 530 Score = 32.0 bits (71), Expect = 1.8 Identities = 17/53 (32%), Positives = 27/53 (50%) Frame = -3 Query: 499 AITRVSGTSLLQNNAVPQGQRGAANGIATTLMSLFKSVAPAGAGILFSWAQKR 341 A SG +++ + + +R A G+A +S VAP GIL+ +A KR Sbjct: 190 AFADTSGIAMIADKYPEEPERSRALGVALAFISFGSLVAPPFGGILYEFAGKR 242
>VACHT_MOUSE (O35304) Vesicular acetylcholine transporter (VAChT) (Solute| carrier family 18 member 3) Length = 530 Score = 32.0 bits (71), Expect = 1.8 Identities = 17/53 (32%), Positives = 27/53 (50%) Frame = -3 Query: 499 AITRVSGTSLLQNNAVPQGQRGAANGIATTLMSLFKSVAPAGAGILFSWAQKR 341 A SG +++ + + +R A G+A +S VAP GIL+ +A KR Sbjct: 190 AFADTSGIAMIADKYPEEPERSRALGVALAFISFGSLVAPPFGGILYEFAGKR 242
>UNC17_CAEEL (P34711) Vesicular acetylcholine transporter unc-17 (Uncoordinated| protein 17) Length = 532 Score = 31.6 bits (70), Expect = 2.3 Identities = 20/70 (28%), Positives = 33/70 (47%) Frame = -3 Query: 553 GIRLGLALYIAAMIKSVLAITRVSGTSLLQNNAVPQGQRGAANGIATTLMSLFKSVAPAG 374 G G+ L+ ++ A SG +++ + + +R AA GIA +S VAP Sbjct: 150 GKSYGVLLFARSLQGFGSAFADTSGLAMIADRFTEENERSAALGIALAFISFGCLVAPPF 209 Query: 373 AGILFSWAQK 344 +L+S A K Sbjct: 210 GSVLYSLAGK 219
>VACHT_TORCA (P81721) Vesicular acetylcholine transporter (VAChT) (TorVAChT)| Length = 515 Score = 30.8 bits (68), Expect = 4.0 Identities = 16/52 (30%), Positives = 26/52 (50%) Frame = -3 Query: 499 AITRVSGTSLLQNNAVPQGQRGAANGIATTLMSLFKSVAPAGAGILFSWAQK 344 A SG +++ + + +R A GIA +S VAP G+L+ +A K Sbjct: 177 AFADTSGIAMIADKYTEESERTQALGIALAFISFGSLVAPPFGGVLYQFAGK 228
>VACHT_TOROC (Q91514) Vesicular acetylcholine transporter (VAChT)| (Vesamicol-binding protein) Length = 511 Score = 30.8 bits (68), Expect = 4.0 Identities = 16/52 (30%), Positives = 26/52 (50%) Frame = -3 Query: 499 AITRVSGTSLLQNNAVPQGQRGAANGIATTLMSLFKSVAPAGAGILFSWAQK 344 A SG +++ + + +R A GIA +S VAP G+L+ +A K Sbjct: 173 AFADTSGIAMIADKYTEESERTQALGIALAFISFGSLVAPPFGGVLYQFAGK 224
>VACHT_TORMA (Q91498) Vesicular acetylcholine transporter (VAChT)| (Vesamicol-binding protein) Length = 511 Score = 30.8 bits (68), Expect = 4.0 Identities = 16/52 (30%), Positives = 26/52 (50%) Frame = -3 Query: 499 AITRVSGTSLLQNNAVPQGQRGAANGIATTLMSLFKSVAPAGAGILFSWAQK 344 A SG +++ + + +R A GIA +S VAP G+L+ +A K Sbjct: 173 AFADTSGIAMIADKYTEESERTQALGIALAFISFGSLVAPPFGGVLYQFAGK 224
>YHHS_SHIFL (P59195) UPF0226 protein yhhS| Length = 419 Score = 30.0 bits (66), Expect = 6.7 Identities = 16/36 (44%), Positives = 19/36 (52%) Frame = -3 Query: 457 AVPQGQRGAANGIATTLMSLFKSVAPAGAGILFSWA 350 AVPQ +GAA T M L V AG++ SWA Sbjct: 346 AVPQQNQGAALATYTVFMDLSLGVTGPLAGLVMSWA 381
>YHHS_ECOLI (P37621) UPF0226 protein yhhS| Length = 419 Score = 30.0 bits (66), Expect = 6.7 Identities = 16/36 (44%), Positives = 19/36 (52%) Frame = -3 Query: 457 AVPQGQRGAANGIATTLMSLFKSVAPAGAGILFSWA 350 AVPQ +GAA T M L V AG++ SWA Sbjct: 346 AVPQQNQGAALATYTVFMDLSLGVTGPLAGLVMSWA 381
>YHHS_ECOL6 (Q8FCN5) UPF0226 protein yhhS| Length = 419 Score = 30.0 bits (66), Expect = 6.7 Identities = 16/36 (44%), Positives = 19/36 (52%) Frame = -3 Query: 457 AVPQGQRGAANGIATTLMSLFKSVAPAGAGILFSWA 350 AVPQ +GAA T M L V AG++ SWA Sbjct: 346 AVPQQNQGAALATYTVFMDLSLGVTGPLAGLVMSWA 381
>YHHS_ECO57 (Q8X6P4) UPF0226 protein yhhS| Length = 419 Score = 30.0 bits (66), Expect = 6.7 Identities = 16/36 (44%), Positives = 19/36 (52%) Frame = -3 Query: 457 AVPQGQRGAANGIATTLMSLFKSVAPAGAGILFSWA 350 AVPQ +GAA T M L V AG++ SWA Sbjct: 346 AVPQQNQGAALATYTVFMDLSLGVTGPLAGLVMSWA 381
>MSBA_CHRVO (Q7NZU6) Lipid A export ATP-binding/permease protein msbA| Length = 584 Score = 29.6 bits (65), Expect = 8.8 Identities = 21/56 (37%), Positives = 26/56 (46%) Frame = -3 Query: 469 LQNNAVPQGQRGAANGIATTLMSLFKSVAPAGAGILFSWAQKRQHAAFFPGDQMVF 302 ++ N V Q AAN T LM +A A A IL+ + QH GD MVF Sbjct: 236 VRRNQVKQSAASAANTGVTQLM-----IACALAAILYFAGLRAQHGGLTAGDFMVF 286 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 90,457,243 Number of Sequences: 219361 Number of extensions: 1785697 Number of successful extensions: 4585 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 4411 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4574 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6655306086 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
