Clone Name | bags31a23 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_450166.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3570 Score = 472 bits (238), Expect = e-130 Identities = 427/490 (87%) Strand = Plus / Plus Query: 8 caacctcaagttacagctactgcttctgtaaagcgtttgtatgtggagaacatgccttat 67 ||||||||||||| ||||| ||||||||||| ||||| ||||| ||||| ||||||||| Sbjct: 2553 caacctcaagttatggctaccgcttctgtaaaacgtttatatgtagagaatatgccttat 2612 Query: 68 attgttagtggctactgccaaaataaagtaggctgtgatactagctgtgaaccaattcaa 127 ||||||||||| | ||||||||||| ||||||| |||| ||| | |||||||||||||| Sbjct: 2613 attgttagtggtttctgccaaaatagagtaggccatgatgctatcagtgaaccaattcaa 2672 Query: 128 tctgttgccttgttggatgctgcgtcacaagaagcttctgtcaatgtgtcttctatggct 187 || |||| ||| ||||||| ||| ||||||||| || ||| |||||||||||| | Sbjct: 2673 tcagttggctttttggatgttgcacatcaagaagctgttggcaacgtgtcttctatgatt 2732 Query: 188 gaaaaatataaaagcatgaaggccacattcaggaagagactagcttttggaaaatcaaga 247 ||||| ||||||||||||||||| |||||||||| |||||||||||||||||| |||||| Sbjct: 2733 gaaaagtataaaagcatgaaggctacattcaggaggagactagcttttggaaagtcaaga 2792 Query: 248 attcatgggtttggtgtttttgcaaaggttggacacaaggcaggagacatgatgatcgaa 307 |||||||| |||||||| |||||||||||| ||||||||||| ||||||||||| || Sbjct: 2793 attcatggatttggtgtctttgcaaaggtttcgcacaaggcaggcgacatgatgattgag 2852 Query: 308 tacataggggagcttgttaggccaccgatatcagaccttagagagcgtcgtatatacaat 367 ||||| || ||||| || |||||||| ||||||||| |||||||||| || |||||||| Sbjct: 2853 tacatcggagagctcgtcaggccaccaatatcagacattagagagcggcgcatatacaac 2912 Query: 368 tctttggtgggtgctgggacatacatgttcaggatagatgatgagcgtgttattgatgct 427 ||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct: 2913 tctttagtgggtgctgggacgtacatgttcaggatagatgatgagcgtgttatagatgct 2972 Query: 428 acacgagcaggaagcatagcccatttgatcaatcactcatgtgagcctaattgttattcg 487 || || ||||||||||| |||||||| || ||||| || |||||||| ||||||||||| Sbjct: 2973 acgcgggcaggaagcattgcccatttaattaatcattcttgtgagccgaattgttattca 3032 Query: 488 cgtgtcataa 497 || ||||||| Sbjct: 3033 cgcgtcataa 3042
>dbj|AK074022.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033074A15, full insert sequence Length = 3570 Score = 472 bits (238), Expect = e-130 Identities = 427/490 (87%) Strand = Plus / Plus Query: 8 caacctcaagttacagctactgcttctgtaaagcgtttgtatgtggagaacatgccttat 67 ||||||||||||| ||||| ||||||||||| ||||| ||||| ||||| ||||||||| Sbjct: 2553 caacctcaagttatggctaccgcttctgtaaaacgtttatatgtagagaatatgccttat 2612 Query: 68 attgttagtggctactgccaaaataaagtaggctgtgatactagctgtgaaccaattcaa 127 ||||||||||| | ||||||||||| ||||||| |||| ||| | |||||||||||||| Sbjct: 2613 attgttagtggtttctgccaaaatagagtaggccatgatgctatcagtgaaccaattcaa 2672 Query: 128 tctgttgccttgttggatgctgcgtcacaagaagcttctgtcaatgtgtcttctatggct 187 || |||| ||| ||||||| ||| ||||||||| || ||| |||||||||||| | Sbjct: 2673 tcagttggctttttggatgttgcacatcaagaagctgttggcaacgtgtcttctatgatt 2732 Query: 188 gaaaaatataaaagcatgaaggccacattcaggaagagactagcttttggaaaatcaaga 247 ||||| ||||||||||||||||| |||||||||| |||||||||||||||||| |||||| Sbjct: 2733 gaaaagtataaaagcatgaaggctacattcaggaggagactagcttttggaaagtcaaga 2792 Query: 248 attcatgggtttggtgtttttgcaaaggttggacacaaggcaggagacatgatgatcgaa 307 |||||||| |||||||| |||||||||||| ||||||||||| ||||||||||| || Sbjct: 2793 attcatggatttggtgtctttgcaaaggtttcgcacaaggcaggcgacatgatgattgag 2852 Query: 308 tacataggggagcttgttaggccaccgatatcagaccttagagagcgtcgtatatacaat 367 ||||| || ||||| || |||||||| ||||||||| |||||||||| || |||||||| Sbjct: 2853 tacatcggagagctcgtcaggccaccaatatcagacattagagagcggcgcatatacaac 2912 Query: 368 tctttggtgggtgctgggacatacatgttcaggatagatgatgagcgtgttattgatgct 427 ||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct: 2913 tctttagtgggtgctgggacgtacatgttcaggatagatgatgagcgtgttatagatgct 2972 Query: 428 acacgagcaggaagcatagcccatttgatcaatcactcatgtgagcctaattgttattcg 487 || || ||||||||||| |||||||| || ||||| || |||||||| ||||||||||| Sbjct: 2973 acgcgggcaggaagcattgcccatttaattaatcattcttgtgagccgaattgttattca 3032 Query: 488 cgtgtcataa 497 || ||||||| Sbjct: 3033 cgcgtcataa 3042
>ref|XM_450167.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2944 Score = 202 bits (102), Expect = 8e-49 Identities = 198/230 (86%) Strand = Plus / Plus Query: 8 caacctcaagttacagctactgcttctgtaaagcgtttgtatgtggagaacatgccttat 67 ||||||||||||| ||||| ||||||||||| ||||| ||||| ||||| ||||||||| Sbjct: 2582 caacctcaagttatggctaccgcttctgtaaaacgtttatatgtagagaatatgccttat 2641 Query: 68 attgttagtggctactgccaaaataaagtaggctgtgatactagctgtgaaccaattcaa 127 ||||||||||| | ||||||||||| ||||||| |||| ||| | |||||||||||||| Sbjct: 2642 attgttagtggtttctgccaaaatagagtaggccatgatgctatcagtgaaccaattcaa 2701 Query: 128 tctgttgccttgttggatgctgcgtcacaagaagcttctgtcaatgtgtcttctatggct 187 || |||| ||| ||||||| ||| ||||||||| || ||| |||||||||||| | Sbjct: 2702 tcagttggctttttggatgttgcacatcaagaagctgttggcaacgtgtcttctatgatt 2761 Query: 188 gaaaaatataaaagcatgaaggccacattcaggaagagactagcttttgg 237 ||||| ||||||||||||||||| |||||||||| ||||||||||||||| Sbjct: 2762 gaaaagtataaaagcatgaaggctacattcaggaggagactagcttttgg 2811
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 202 bits (102), Expect = 8e-49 Identities = 198/230 (86%) Strand = Plus / Minus Query: 8 caacctcaagttacagctactgcttctgtaaagcgtttgtatgtggagaacatgccttat 67 ||||||||||||| ||||| ||||||||||| ||||| ||||| ||||| ||||||||| Sbjct: 2554495 caacctcaagttatggctaccgcttctgtaaaacgtttatatgtagagaatatgccttat 2554436 Query: 68 attgttagtggctactgccaaaataaagtaggctgtgatactagctgtgaaccaattcaa 127 ||||||||||| | ||||||||||| ||||||| |||| ||| | |||||||||||||| Sbjct: 2554435 attgttagtggtttctgccaaaatagagtaggccatgatgctatcagtgaaccaattcaa 2554376 Query: 128 tctgttgccttgttggatgctgcgtcacaagaagcttctgtcaatgtgtcttctatggct 187 || |||| ||| ||||||| ||| ||||||||| || ||| |||||||||||| | Sbjct: 2554375 tcagttggctttttggatgttgcacatcaagaagctgttggcaacgtgtcttctatgatt 2554316 Query: 188 gaaaaatataaaagcatgaaggccacattcaggaagagactagcttttgg 237 ||||| ||||||||||||||||| |||||||||| ||||||||||||||| Sbjct: 2554315 gaaaagtataaaagcatgaaggctacattcaggaggagactagcttttgg 2554266 Score = 121 bits (61), Expect = 2e-24 Identities = 88/97 (90%) Strand = Plus / Minus Query: 376 gggtgctgggacatacatgttcaggatagatgatgagcgtgttattgatgctacacgagc 435 |||||||||||| |||||||||||||||||||||||||||||||| |||||||| || || Sbjct: 2550989 gggtgctgggacgtacatgttcaggatagatgatgagcgtgttatagatgctacgcgggc 2550930 Query: 436 aggaagcatagcccatttgatcaatcactcatgtgag 472 ||||||||| |||||||| || ||||| || |||||| Sbjct: 2550929 aggaagcattgcccatttaattaatcattcttgtgag 2550893 Score = 69.9 bits (35), Expect = 8e-09 Identities = 56/63 (88%) Strand = Plus / Minus Query: 236 ggaaaatcaagaattcatgggtttggtgtttttgcaaaggttggacacaaggcaggagac 295 ||||| |||||||||||||| |||||||| |||||||||||| ||||||||||| ||| Sbjct: 2553478 ggaaagtcaagaattcatggatttggtgtctttgcaaaggtttcgcacaaggcaggcgac 2553419 Query: 296 atg 298 ||| Sbjct: 2553418 atg 2553416
>dbj|AP005583.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0406E03 Length = 201069 Score = 202 bits (102), Expect = 8e-49 Identities = 198/230 (86%) Strand = Plus / Minus Query: 8 caacctcaagttacagctactgcttctgtaaagcgtttgtatgtggagaacatgccttat 67 ||||||||||||| ||||| ||||||||||| ||||| ||||| ||||| ||||||||| Sbjct: 141085 caacctcaagttatggctaccgcttctgtaaaacgtttatatgtagagaatatgccttat 141026 Query: 68 attgttagtggctactgccaaaataaagtaggctgtgatactagctgtgaaccaattcaa 127 ||||||||||| | ||||||||||| ||||||| |||| ||| | |||||||||||||| Sbjct: 141025 attgttagtggtttctgccaaaatagagtaggccatgatgctatcagtgaaccaattcaa 140966 Query: 128 tctgttgccttgttggatgctgcgtcacaagaagcttctgtcaatgtgtcttctatggct 187 || |||| ||| ||||||| ||| ||||||||| || ||| |||||||||||| | Sbjct: 140965 tcagttggctttttggatgttgcacatcaagaagctgttggcaacgtgtcttctatgatt 140906 Query: 188 gaaaaatataaaagcatgaaggccacattcaggaagagactagcttttgg 237 ||||| ||||||||||||||||| |||||||||| ||||||||||||||| Sbjct: 140905 gaaaagtataaaagcatgaaggctacattcaggaggagactagcttttgg 140856 Score = 121 bits (61), Expect = 2e-24 Identities = 88/97 (90%) Strand = Plus / Minus Query: 376 gggtgctgggacatacatgttcaggatagatgatgagcgtgttattgatgctacacgagc 435 |||||||||||| |||||||||||||||||||||||||||||||| |||||||| || || Sbjct: 137579 gggtgctgggacgtacatgttcaggatagatgatgagcgtgttatagatgctacgcgggc 137520 Query: 436 aggaagcatagcccatttgatcaatcactcatgtgag 472 ||||||||| |||||||| || ||||| || |||||| Sbjct: 137519 aggaagcattgcccatttaattaatcattcttgtgag 137483 Score = 69.9 bits (35), Expect = 8e-09 Identities = 56/63 (88%) Strand = Plus / Minus Query: 236 ggaaaatcaagaattcatgggtttggtgtttttgcaaaggttggacacaaggcaggagac 295 ||||| |||||||||||||| |||||||| |||||||||||| ||||||||||| ||| Sbjct: 140068 ggaaagtcaagaattcatggatttggtgtctttgcaaaggtttcgcacaaggcaggcgac 140009 Query: 296 atg 298 ||| Sbjct: 140008 atg 140006
>dbj|AK065095.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001M12, full insert sequence Length = 2944 Score = 202 bits (102), Expect = 8e-49 Identities = 198/230 (86%) Strand = Plus / Plus Query: 8 caacctcaagttacagctactgcttctgtaaagcgtttgtatgtggagaacatgccttat 67 ||||||||||||| ||||| ||||||||||| ||||| ||||| ||||| ||||||||| Sbjct: 2582 caacctcaagttatggctaccgcttctgtaaaacgtttatatgtagagaatatgccttat 2641 Query: 68 attgttagtggctactgccaaaataaagtaggctgtgatactagctgtgaaccaattcaa 127 ||||||||||| | ||||||||||| ||||||| |||| ||| | |||||||||||||| Sbjct: 2642 attgttagtggtttctgccaaaatagagtaggccatgatgctatcagtgaaccaattcaa 2701 Query: 128 tctgttgccttgttggatgctgcgtcacaagaagcttctgtcaatgtgtcttctatggct 187 || |||| ||| ||||||| ||| ||||||||| || ||| |||||||||||| | Sbjct: 2702 tcagttggctttttggatgttgcacatcaagaagctgttggcaacgtgtcttctatgatt 2761 Query: 188 gaaaaatataaaagcatgaaggccacattcaggaagagactagcttttgg 237 ||||| ||||||||||||||||| |||||||||| ||||||||||||||| Sbjct: 2762 gaaaagtataaaagcatgaaggctacattcaggaggagactagcttttgg 2811
>ref|NM_179839.1| Arabidopsis thaliana DNA binding / nucleic acid binding / protein binding / zinc ion binding AT2G31650 mRNA, complete cds Length = 3276 Score = 79.8 bits (40), Expect = 8e-12 Identities = 109/132 (82%) Strand = Plus / Plus Query: 178 ttctatggctgaaaaatataaaagcatgaaggccacattcaggaagagactagcttttgg 237 |||||||||||| ||||||| | ||||| || |||| |||||||||| |||| ||||| Sbjct: 2649 ttctatggctgagaaatatagatacatgagggaaacatacaggaagagattagcatttgg 2708 Query: 238 aaaatcaagaattcatgggtttggtgtttttgcaaaggttggacacaaggcaggagacat 297 |||||| |||||||||| ||||| ||||||||||| || |||| ||| ||||| || Sbjct: 2709 gaaatcaggaattcatggttttggcatttttgcaaagcttcctcacagggcgggagatat 2768 Query: 298 gatgatcgaata 309 |||||| ||||| Sbjct: 2769 gatgattgaata 2780 Score = 75.8 bits (38), Expect = 1e-10 Identities = 110/134 (82%) Strand = Plus / Plus Query: 362 tacaattctttggtgggtgctgggacatacatgttcaggatagatgatgagcgtgttatt 421 |||||||| |||||||||| ||||| |||||||| || || ||||||||||| || || Sbjct: 2833 tacaattcaatggtgggtgcagggacttacatgtttagaatcgatgatgagcgagtcata 2892 Query: 422 gatgctacacgagcaggaagcatagcccatttgatcaatcactcatgtgagcctaattgt 481 ||||||||| | |||||||||| || || |||| ||||| ||||||| ||| ||||| Sbjct: 2893 gatgctacaaggacaggaagcattgctcacctgattaatcattcatgtgtgcccaattgc 2952 Query: 482 tattcgcgtgtcat 495 ||||| || ||||| Sbjct: 2953 tattctcgagtcat 2966
>gb|AF329273.1|AF329273 Arabidopsis thaliana trithorax-like protein 1 (TRX1) mRNA, complete cds Length = 3189 Score = 79.8 bits (40), Expect = 8e-12 Identities = 109/132 (82%) Strand = Plus / Plus Query: 178 ttctatggctgaaaaatataaaagcatgaaggccacattcaggaagagactagcttttgg 237 |||||||||||| ||||||| | ||||| || |||| |||||||||| |||| ||||| Sbjct: 2649 ttctatggctgagaaatatagatacatgagggaaacatacaggaagagattagcatttgg 2708 Query: 238 aaaatcaagaattcatgggtttggtgtttttgcaaaggttggacacaaggcaggagacat 297 |||||| |||||||||| ||||| ||||||||||| || |||| ||| ||||| || Sbjct: 2709 gaaatcaggaattcatggttttggcatttttgcaaagcttcctcacagggcgggagatat 2768 Query: 298 gatgatcgaata 309 |||||| ||||| Sbjct: 2769 gatgattgaata 2780 Score = 75.8 bits (38), Expect = 1e-10 Identities = 110/134 (82%) Strand = Plus / Plus Query: 362 tacaattctttggtgggtgctgggacatacatgttcaggatagatgatgagcgtgttatt 421 |||||||| |||||||||| ||||| |||||||| || || ||||||||||| || || Sbjct: 2833 tacaattcaatggtgggtgcagggacttacatgtttagaatcgatgatgagcgagtcata 2892 Query: 422 gatgctacacgagcaggaagcatagcccatttgatcaatcactcatgtgagcctaattgt 481 ||||||||| | |||||||||| || || |||| ||||| ||||||| ||| ||||| Sbjct: 2893 gatgctacaaggacaggaagcattgctcacctgattaatcattcatgtgtgcccaattgc 2952 Query: 482 tattcgcgtgtcat 495 ||||| || ||||| Sbjct: 2953 tattctcgagtcat 2966
>emb|BX842472.1|CNS0A9SD Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB4ZD02 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1430 Score = 79.8 bits (40), Expect = 8e-12 Identities = 109/132 (82%) Strand = Plus / Plus Query: 178 ttctatggctgaaaaatataaaagcatgaaggccacattcaggaagagactagcttttgg 237 |||||||||||| ||||||| | ||||| || |||| |||||||||| |||| ||||| Sbjct: 851 ttctatggctgagaaatatagatacatgagggagacatacaggaagagattagcatttgg 910 Query: 238 aaaatcaagaattcatgggtttggtgtttttgcaaaggttggacacaaggcaggagacat 297 |||||| |||||||||| ||||| ||||||||||| || |||| ||| ||||| || Sbjct: 911 gaaatcaggaattcatggttttggcatttttgcaaagcttcctcacagggcgggagatat 970 Query: 298 gatgatcgaata 309 |||||| ||||| Sbjct: 971 gatgattgaata 982 Score = 75.8 bits (38), Expect = 1e-10 Identities = 110/134 (82%) Strand = Plus / Plus Query: 362 tacaattctttggtgggtgctgggacatacatgttcaggatagatgatgagcgtgttatt 421 |||||||| |||||||||| ||||| |||||||| || || ||||||||||| || || Sbjct: 1035 tacaattcaatggtgggtgcagggacttacatgtttagaatcgatgatgagcgagtcata 1094 Query: 422 gatgctacacgagcaggaagcatagcccatttgatcaatcactcatgtgagcctaattgt 481 ||||||||| | |||||||||| || || |||| ||||| ||||||| ||| ||||| Sbjct: 1095 gatgctacaaggacaggaagcattgctcacctgattaatcattcatgtgtgcccaattgc 1154 Query: 482 tattcgcgtgtcat 495 ||||| || ||||| Sbjct: 1155 tattctcgagtcat 1168
>gb|BT002941.1| Arabidopsis thaliana clone RAFL15-02-L12 (R20230) putative trithorax protein 1 (At2g31650) mRNA, complete cds Length = 1726 Score = 79.8 bits (40), Expect = 8e-12 Identities = 109/132 (82%) Strand = Plus / Plus Query: 178 ttctatggctgaaaaatataaaagcatgaaggccacattcaggaagagactagcttttgg 237 |||||||||||| ||||||| | ||||| || |||| |||||||||| |||| ||||| Sbjct: 1083 ttctatggctgagaaatatagatacatgagggaaacatacaggaagagattagcatttgg 1142 Query: 238 aaaatcaagaattcatgggtttggtgtttttgcaaaggttggacacaaggcaggagacat 297 |||||| |||||||||| ||||| ||||||||||| || |||| ||| ||||| || Sbjct: 1143 gaaatcaggaattcatggttttggcatttttgcaaagcttcctcacagggcgggagatat 1202 Query: 298 gatgatcgaata 309 |||||| ||||| Sbjct: 1203 gatgattgaata 1214 Score = 75.8 bits (38), Expect = 1e-10 Identities = 110/134 (82%) Strand = Plus / Plus Query: 362 tacaattctttggtgggtgctgggacatacatgttcaggatagatgatgagcgtgttatt 421 |||||||| |||||||||| ||||| |||||||| || || ||||||||||| || || Sbjct: 1267 tacaattcaatggtgggtgcagggacttacatgtttagaatcgatgatgagcgagtcata 1326 Query: 422 gatgctacacgagcaggaagcatagcccatttgatcaatcactcatgtgagcctaattgt 481 ||||||||| | |||||||||| || || |||| ||||| ||||||| ||| ||||| Sbjct: 1327 gatgctacaaggacaggaagcattgctcacctgattaatcattcatgtgtgcccaattgc 1386 Query: 482 tattcgcgtgtcat 495 ||||| || ||||| Sbjct: 1387 tattctcgagtcat 1400
>ref|NM_100464.3| Arabidopsis thaliana DNA binding / nucleic acid binding / protein binding / zinc ion binding AT1G05830 mRNA, complete cds Length = 3726 Score = 71.9 bits (36), Expect = 2e-09 Identities = 240/308 (77%) Strand = Plus / Plus Query: 179 tctatggctgaaaaatataaaagcatgaaggccacattcaggaagagactagcttttgga 238 |||||||| || ||||||| | |||||||| || | |||||||||| |||| || || Sbjct: 2840 tctatggccgagaaatatacattcatgaaggaaacctacaggaagagattagcattcggg 2899 Query: 239 aaatcaagaattcatgggtttggtgtttttgcaaaggttggacacaaggcaggagacatg 298 ||||| |||||||||| ||||| | ||||||||| || |||| || ||||| ||| Sbjct: 2900 aaatcgggaattcatggttttgggatctttgcaaagcttccgcacagagccggagatatg 2959 Query: 299 atgatcgaatacataggggagcttgttaggccaccgatatcagaccttagagagcgtcgt 358 |||| || |||| || || |||||||||||||| ||| | ||| ||||||| || | Sbjct: 2960 gtgattgagtacactggtgaacttgttaggccaccaatagctgacaagagagagcatctt 3019 Query: 359 atatacaattctttggtgggtgctgggacatacatgttcaggatagatgatgagcgtgtt 418 |||||||| || |||||||||| ||||| || ||||| || || ||| ||||||| || Sbjct: 3020 atatacaactcaatggtgggtgccgggacctatatgtttagaattgataatgagcgggtc 3079 Query: 419 attgatgctacacgagcaggaagcatagcccatttgatcaatcactcatgtgagcctaat 478 || || || ||| | |||||||||| || || | |||||||| ||||||||||| ||| Sbjct: 3080 atagacgcaacaaggacaggaagcattgctcaccttatcaatcattcatgtgagccaaat 3139 Query: 479 tgttattc 486 || ||||| Sbjct: 3140 tgctattc 3147
>emb|BX814404.1|CNS0ACBA Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB72ZB06 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 991 Score = 69.9 bits (35), Expect = 8e-09 Identities = 134/167 (80%) Strand = Plus / Plus Query: 320 cttgttaggccaccgatatcagaccttagagagcgtcgtatatacaattctttggtgggt 379 |||||||||||||| ||| | ||| ||||||| || ||||||||| || |||||||| Sbjct: 286 cttgttaggccaccaatagctgacaagagagagcatcttatatacaactcaatggtgggt 345 Query: 380 gctgggacatacatgttcaggatagatgatgagcgtgttattgatgctacacgagcagga 439 || ||||| || ||||| || || ||| ||||||| ||||| || || ||| | ||||| Sbjct: 346 gccgggacctatatgtttagaattgataatgagcgggttatagacgcaacaaggacagga 405 Query: 440 agcatagcccatttgatcaatcactcatgtgagcctaattgttattc 486 ||||| || || | |||||||| ||||||||||| ||||| ||||| Sbjct: 406 agcattgctcaccttatcaatcattcatgtgagccaaattgctattc 452
>gb|AC007071.7| Arabidopsis thaliana chromosome 2 clone T9H9 map nga361, complete sequence Length = 79734 Score = 54.0 bits (27), Expect = 4e-04 Identities = 78/95 (82%) Strand = Plus / Minus Query: 376 gggtgctgggacatacatgttcaggatagatgatgagcgtgttattgatgctacacgagc 435 |||||| ||||| |||||||| || || ||||||||||| || || ||||||||| | | Sbjct: 44690 gggtgcagggacttacatgtttagaatcgatgatgagcgagtcatagatgctacaaggac 44631 Query: 436 aggaagcatagcccatttgatcaatcactcatgtg 470 ||||||||| || || |||| ||||| ||||||| Sbjct: 44630 aggaagcattgctcacctgattaatcattcatgtg 44596 Score = 40.1 bits (20), Expect = 6.7 Identities = 50/60 (83%) Strand = Plus / Minus Query: 178 ttctatggctgaaaaatataaaagcatgaaggccacattcaggaagagactagcttttgg 237 |||||||||||| ||||||| | ||||| || |||| |||||||||| |||| ||||| Sbjct: 45387 ttctatggctgagaaatatagatacatgagggaaacatacaggaagagattagcatttgg 45328 Score = 40.1 bits (20), Expect = 6.7 Identities = 32/36 (88%) Strand = Plus / Minus Query: 239 aaatcaagaattcatgggtttggtgtttttgcaaag 274 |||||| |||||||||| ||||| ||||||||||| Sbjct: 45128 aaatcaggaattcatggttttggcatttttgcaaag 45093
>gb|AC125083.3| Mus musculus chromosome 19 clone RP24-98I2, complete sequence Length = 172673 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 247 aattcatgggtttggtgttttt 268 |||||||||||||||||||||| Sbjct: 140195 aattcatgggtttggtgttttt 140216
>gb|AC103947.20| Mus musculus chromosome 19, clone RP23-261A21, complete sequence Length = 245390 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 247 aattcatgggtttggtgttttt 268 |||||||||||||||||||||| Sbjct: 200173 aattcatgggtttggtgttttt 200152
>emb|AL139000.9| Human DNA sequence from clone RP11-173M10 on chromosome 13q14.3-21.31, complete sequence Length = 157028 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 179 tctatggctgaaaaatataaaa 200 |||||||||||||||||||||| Sbjct: 683 tctatggctgaaaaatataaaa 704
>emb|AL591382.3| Zebrafish DNA sequence from clone BUSM1-105L16 in linkage group 7 Contains the nitr2d_1 gene for novel immune-type receptor 2d, allele 1, the nitr1o_3 gene for novel immune-type receptor 1o, allele 3, the nitr1m_2 gene for novel immune-type receptor 1m, allele 2, the nitr1l_2 gene for novel immune-type receptor 1l, allele 2, a novel immune-type receptor 1 pseudogene, the nitr5_4 gene for novel immune-type receptor 5, allele 4, the nitr4a_2 gene for novel immune-type receptor 4a, allele 2, the nitr1i_2 gene for novel immune-type receptor 1i, allele 2, the nitr1j_1 gene for novel immune-type receptor 1j, allele 1, the nitr1g_1 gene for novel immune-type receptor 1g, allele 1, a novel immune-type receptor 4b pseudogene, a novel gene, the nitr1k_3 gene for novel immune-type receptor 1k, allele 3 and a CpG island, complete sequence Length = 98934 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 38 aagcgtttgtatgtggagaaca 59 |||||||||||||||||||||| Sbjct: 55480 aagcgtttgtatgtggagaaca 55459
>emb|BX322601.9| Zebrafish DNA sequence from clone DKEY-170H8 in linkage group 7, complete sequence Length = 210153 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 38 aagcgtttgtatgtggagaaca 59 |||||||||||||||||||||| Sbjct: 179889 aagcgtttgtatgtggagaaca 179868
>emb|BX088704.7| Zebrafish DNA sequence from clone CH211-208M6 in linkage group 7, complete sequence Length = 209042 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 38 aagcgtttgtatgtggagaaca 59 |||||||||||||||||||||| Sbjct: 194920 aagcgtttgtatgtggagaaca 194899
>gb|U73629.1|HSU73629 Human chromosome 11 114g8 cosmid, complete sequence Length = 39563 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 372 tggtgggtgctgggacatacat 393 |||||||||||||||||||||| Sbjct: 28828 tggtgggtgctgggacatacat 28807
>ref|XM_508792.1| PREDICTED: Pan troglodytes similar to ALL-1 protein (LOC451587), mRNA Length = 12960 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Plus Query: 455 atcaatcactcatgtgagcctaattgttattcgcgtgtcat 495 ||||||||||| ||||||||||| || ||||| || ||||| Sbjct: 12763 atcaatcactcgtgtgagcctaactgctattctcgggtcat 12803
>emb|CR388060.19| Zebrafish DNA sequence from clone DKEY-208J8 in linkage group 16, complete sequence Length = 213586 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 38 aagcgtttgtatgtggagaac 58 ||||||||||||||||||||| Sbjct: 103784 aagcgtttgtatgtggagaac 103804
>ref|XM_736798.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000615.01.0) partial mRNA Length = 2247 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 458 aatcactcatgtgagcctaat 478 ||||||||||||||||||||| Sbjct: 2062 aatcactcatgtgagcctaat 2082
>gb|AY373585.1| Homo sapiens myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila) (MLL) gene, complete cds Length = 89753 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Plus Query: 455 atcaatcactcatgtgagcctaattgttattcgcgtgtcat 495 ||||||||||| ||||||||||| || ||||| || ||||| Sbjct: 87576 atcaatcactcgtgtgagcctaactgctattctcgggtcat 87616
>ref|NM_005933.2| Homo sapiens myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila) (MLL), mRNA Length = 14982 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Plus Query: 455 atcaatcactcatgtgagcctaattgttattcgcgtgtcat 495 ||||||||||| ||||||||||| || ||||| || ||||| Sbjct: 11736 atcaatcactcgtgtgagcctaactgctattctcgggtcat 11776
>emb|BX927222.8| Zebrafish DNA sequence from clone CH211-256M12 in linkage group 16, complete sequence Length = 154714 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 38 aagcgtttgtatgtggagaac 58 ||||||||||||||||||||| Sbjct: 141702 aagcgtttgtatgtggagaac 141682
>emb|BX510302.7| Zebrafish DNA sequence from clone RP71-81M21, complete sequence Length = 155767 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 38 aagcgtttgtatgtggagaac 58 ||||||||||||||||||||| Sbjct: 139137 aagcgtttgtatgtggagaac 139117
>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome Length = 6260361 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 168 tcaatgtgtcttctatggctg 188 ||||||||||||||||||||| Sbjct: 125922 tcaatgtgtcttctatggctg 125902
>emb|BX284621.6| Zebrafish DNA sequence from clone CH211-207N6, complete sequence Length = 217722 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 38 aagcgtttgtatgtggagaac 58 ||||||||||||||||||||| Sbjct: 145880 aagcgtttgtatgtggagaac 145860
>emb|AL845330.16| Zebrafish DNA sequence from clone DKEY-286J15 in linkage group 22, complete sequence Length = 175991 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 38 aagcgtttgtatgtggagaac 58 ||||||||||||||||||||| Sbjct: 38019 aagcgtttgtatgtggagaac 37999
>emb|Z69780.1|HSALL1X37 H.sapiens ALL-1 gene exon 37 Length = 4080 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Plus Query: 455 atcaatcactcatgtgagcctaattgttattcgcgtgtcat 495 ||||||||||| ||||||||||| || ||||| || ||||| Sbjct: 109 atcaatcactcgtgtgagcctaactgctattctcgggtcat 149
>dbj|AP001267.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-770J1, complete sequence Length = 194310 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Plus Query: 455 atcaatcactcatgtgagcctaattgttattcgcgtgtcat 495 ||||||||||| ||||||||||| || ||||| || ||||| Sbjct: 147413 atcaatcactcgtgtgagcctaactgctattctcgggtcat 147453
>dbj|AB209508.1| Homo sapiens mRNA for myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila) variant protein Length = 11222 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Plus Query: 455 atcaatcactcatgtgagcctaattgttattcgcgtgtcat 495 ||||||||||| ||||||||||| || ||||| || ||||| Sbjct: 9280 atcaatcactcgtgtgagcctaactgctattctcgggtcat 9320
>gb|L04284.1|HUMHRX Human germline HRX mRNA, complete cds Length = 11910 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Plus Query: 455 atcaatcactcatgtgagcctaattgttattcgcgtgtcat 495 ||||||||||| ||||||||||| || ||||| || ||||| Sbjct: 11713 atcaatcactcgtgtgagcctaactgctattctcgggtcat 11753
>gb|L04731.1|HUMTRLALL1 Homo sapiens translocation T(4:11) of ALL-1 gene to chromosome 4 Length = 14255 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Plus Query: 455 atcaatcactcatgtgagcctaattgttattcgcgtgtcat 495 ||||||||||| ||||||||||| || ||||| || ||||| Sbjct: 11536 atcaatcactcgtgtgagcctaactgctattctcgggtcat 11576
>gb|AC119980.7| Mus musculus chromosome 8, clone RP24-495J19, complete sequence Length = 145150 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 15 aagttacagctactgcttctgtaa 38 ||||||||| |||||||||||||| Sbjct: 133605 aagttacaggtactgcttctgtaa 133628
>gb|AC117750.7| Mus musculus chromosome 8, clone RP24-325F22, complete sequence Length = 187432 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 15 aagttacagctactgcttctgtaa 38 ||||||||| |||||||||||||| Sbjct: 52078 aagttacaggtactgcttctgtaa 52101
>gb|AC146199.2| Pan troglodytes BAC clone RP43-25F11 from 7, complete sequence Length = 186750 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 attcaatctgttgccttgtt 141 |||||||||||||||||||| Sbjct: 129240 attcaatctgttgccttgtt 129259
>ref|XM_851538.1| PREDICTED: Canis familiaris similar to Muskelin, transcript variant 2 (LOC607643), mRNA Length = 1716 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 attcaatctgttgccttgtt 141 |||||||||||||||||||| Sbjct: 424 attcaatctgttgccttgtt 443
>gb|AC132324.3| Mus musculus BAC clone RP24-270C24 from chromosome 13, complete sequence Length = 169258 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 386 acatacatgttcaggatagatgat 409 ||||||||| |||||||||||||| Sbjct: 17835 acatacatggtcaggatagatgat 17858
>emb|Z36753.1|CET09A5 Caenorhabditis elegans Cosmid T09A5, complete sequence Length = 38700 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 378 gtgctgggacatacatgttc 397 |||||||||||||||||||| Sbjct: 37416 gtgctgggacatacatgttc 37435
>emb|AL139232.13| Human DNA sequence from clone RP1-237I15 on chromosome 6 Contains a novel gene, the 5' end of the gene for flavohemoprotein B5+B5R and a CpG island, complete sequence Length = 137659 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 gaaaaatataaaagcatgaa 207 |||||||||||||||||||| Sbjct: 103494 gaaaaatataaaagcatgaa 103475
>emb|AJ248284.1|CNSPAX02 Pyrococcus abyssi complete genome; segment 2/6 Length = 293250 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 406 tgatgagcgtgttattgatg 425 |||||||||||||||||||| Sbjct: 117120 tgatgagcgtgttattgatg 117139
>emb|BX322530.5| Zebrafish DNA sequence from clone DKEY-19N13 in linkage group 16, complete sequence Length = 159319 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 aagcgtttgtatgtggagaa 57 |||||||||||||||||||| Sbjct: 113958 aagcgtttgtatgtggagaa 113977
>gb|AC067743.10| Homo sapiens chromosome 10 clone RP11-441P16, complete sequence Length = 177795 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 221 aagagactagcttttggaaaatca 244 |||| ||||||||||||||||||| Sbjct: 7914 aagatactagcttttggaaaatca 7891
>dbj|AP007171.1| Aspergillus oryzae RIB40 genomic DNA, SC011 Length = 2505489 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 tgtatgtggagaacatgcct 64 |||||||||||||||||||| Sbjct: 1336412 tgtatgtggagaacatgcct 1336431
>gb|AC018642.7| Homo sapiens chromosome 7 clone RP11-329I5, complete sequence Length = 194523 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 attcaatctgttgccttgtt 141 |||||||||||||||||||| Sbjct: 14153 attcaatctgttgccttgtt 14134
>gb|AF328015.1|AF328015 Paraphidippus aurantius cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial gene for mitochondrial product Length = 1047 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 tgtgtcttctatggctgaaa 191 |||||||||||||||||||| Sbjct: 78 tgtgtcttctatggctgaaa 97
>ref|NM_063255.3| Caenorhabditis elegans T09A5.12 (T09A5.12) mRNA, complete cds Length = 2742 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 378 gtgctgggacatacatgttc 397 |||||||||||||||||||| Sbjct: 546 gtgctgggacatacatgttc 527
>gb|AC009783.9|AC009783 Homo sapiens chromosome 7 clone RP11-14M12, complete sequence Length = 169326 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 attcaatctgttgccttgtt 141 |||||||||||||||||||| Sbjct: 97020 attcaatctgttgccttgtt 97039
>gb|AE001439.1| Helicobacter pylori J99, complete genome Length = 1643831 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 ttggtgtttttgcaaaggtt 277 |||||||||||||||||||| Sbjct: 170518 ttggtgtttttgcaaaggtt 170537
>gb|AC132387.4| Mus musculus BAC clone RP23-440M14 from 1, complete sequence Length = 193449 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 ttctttggtgggtgctggga 386 |||||||||||||||||||| Sbjct: 131761 ttctttggtgggtgctggga 131780
>gb|AE000511.1| Helicobacter pylori 26695, complete genome Length = 1667867 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 ttggtgtttttgcaaaggtt 277 |||||||||||||||||||| Sbjct: 177084 ttggtgtttttgcaaaggtt 177103
>gb|AC116390.13| Mus musculus chromosome 15, clone RP23-78N1, complete sequence Length = 232133 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 tcacaagaagcttctgtcaa 171 |||||||||||||||||||| Sbjct: 56523 tcacaagaagcttctgtcaa 56542
>emb|AL772210.8| Mouse DNA sequence from clone RP23-407G17 on chromosome 4, complete sequence Length = 143653 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 382 tgggacatacatgttcagga 401 |||||||||||||||||||| Sbjct: 130776 tgggacatacatgttcagga 130757 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,197,842 Number of Sequences: 3902068 Number of extensions: 5197842 Number of successful extensions: 93978 Number of sequences better than 10.0: 55 Number of HSP's better than 10.0 without gapping: 55 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 93792 Number of HSP's gapped (non-prelim): 179 length of query: 497 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 475 effective length of database: 17,147,199,772 effective search space: 8144919891700 effective search space used: 8144919891700 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)