ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags36e12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_549801.1| Oryza sativa (japonica cultivar-group), mRNA 367 3e-98
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 274 3e-70
3dbj|AP003727.3| Oryza sativa (japonica cultivar-group) genomic D... 274 3e-70
4dbj|AP008219.1| Oryza sativa (japonica cultivar-group) genomic D... 274 3e-70
5gb|AY110188.1| Zea mays CL40463_1 mRNA sequence 178 1e-41
6ref|NM_115819.2| Arabidopsis thaliana unknown protein AT3G59570 ... 80 9e-12
7dbj|AP003228.3| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
8ref|NM_129910.1| Arabidopsis thaliana unknown protein AT2G43490 ... 56 1e-04
9gb|AY429356.1| Arabidopsis thaliana At2g43490 mRNA, partial sequ... 56 1e-04
10gb|AY429355.1| Arabidopsis thaliana At2g43490 mRNA, partial sequ... 56 1e-04
11emb|AL138659.1|ATT16L24 Arabidopsis thaliana DNA chromosome 3, B... 56 1e-04
12gb|BT013152.1| Lycopersicon esculentum clone 134156F, mRNA sequence 44 0.50
13gb|AC093608.3| Homo sapiens BAC clone RP11-700C8 from 4, complet... 44 0.50
14gb|U80440.2| Caenorhabditis elegans cosmid T21E12, complete sequ... 42 2.0
15gb|DQ160197.1| Homo sapiens RAD51-like 1 (S. cerevisiae) (RAD51L... 42 2.0
16dbj|BA000032.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromo... 42 2.0
17gb|AC135316.15| Medicago truncatula clone mth2-20l8, complete se... 42 2.0
18gb|AC002335.3| Arabidopsis thaliana chromosome 2 clone T1O24 map... 42 2.0
19emb|BX530089.9| Zebrafish DNA sequence from clone CH211-129M12 i... 42 2.0
20ref|NM_058962.2| Caenorhabditis elegans Dynein Heavy Chain famil... 42 2.0
21emb|AL121595.5|CNS01DRZ Human chromosome 14 DNA sequence BAC C-3... 42 2.0
22gb|L33260.1|CELDYNEINH Caenorhabditis elegans dynein heavy chain... 42 2.0
23dbj|AP004940.1| Lotus japonicus genomic DNA, chromosome 3, clone... 42 2.0
24gb|AC164649.4| Mus musculus BAC clone RP23-437D10 from chromosom... 40 7.9
25gb|AC146084.2| Pan troglodytes BAC clone RP43-56L21 from 7, comp... 40 7.9
26gb|AC140042.19| Mus musculus chromosome 5, clone RP23-437D10, co... 40 7.9
27gb|AC093483.6| Mus musculus chromosome 9, clone RP23-79K5, compl... 40 7.9
28emb|AL365202.19| Human DNA sequence from clone RP11-326A8 on chr... 40 7.9
29emb|AL049612.11|HSJ182D15 Human DNA sequence from clone RP1-182D... 40 7.9
30gb|AC105755.4| Homo sapiens BAC clone RP11-46H14 from 4, complet... 40 7.9
31dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 7.9
32gb|AC051643.5| Homo sapiens chromosome 15, clone RP11-615L8, com... 40 7.9
33emb|AL109985.5|CNS018P2 Human chromosome 14 DNA sequence BAC R-3... 40 7.9
34dbj|AP003087.2| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 7.9 
>ref|XM_549801.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2055

 Score =  367 bits (185), Expect = 3e-98
 Identities = 404/477 (84%)
 Strand = Plus / Plus

                                                                        
Query: 15   gctttccggatgctgctagtgctttttcgtcgagagctatcttttgaggagtcgttgagc 74
            |||||||||||||||||||||||||||||||||||||| || |||||||||||  | |||
Sbjct: 1525 gctttccggatgctgctagtgctttttcgtcgagagctgtcctttgaggagtcacttagc 1584

                                                                        
Query: 75   atgtgggagatgatgtgggctgctgattttgatgaagatgcaatcaggaatttggaagcg 134
            |||||||||||||||||||||||||| ||| |||||||||  ||     ||||||||| |
Sbjct: 1585 atgtgggagatgatgtgggctgctgactttaatgaagatgtgattttacatttggaagag 1644

                                                                        
Query: 135  aactgcctagaaccgttgctactagatgtgaagaatgatttgtcatgtgaggtcaaagaa 194
            || || || || || |||||  ||||| ||| ||||||||| ||||||||||| ||||||
Sbjct: 1645 aattgtctggagccattgctggtagatatgaggaatgatttatcatgtgaggtgaaagaa 1704

                                                                        
Query: 195  gagccccgagtgaacaagcacacgagaagaaaatccaaaagcaggagatcccatcgtaga 254
            |||| ||| |||||||   |||| |||||||| |||||||||||||   |||||| ||||
Sbjct: 1705 gagcaccgggtgaacagttacacaagaagaaagtccaaaagcaggaagccccatcataga 1764

                                                                        
Query: 255  aatggtgaaatccgcgtttcttgcaaccccggagtgaaatctagtacaagaaatcccctg 314
            ||||||||||| || ||  |||||||||  ||| ||||| | | ||||||||||||||| 
Sbjct: 1765 aatggtgaaatgcgtgtagcttgcaaccttggaatgaaacccaatacaagaaatcccctc 1824

                                                                        
Query: 315  tgtggcttgtcaggtgctactatctgggcaaggcatcaacatatgcctcatttgagtaca 374
            |||||||||||||| |||||||| |||||||| ||||| || ||||| ||| | || |||
Sbjct: 1825 tgtggcttgtcaggagctactatttgggcaagacatcagcagatgccacatataagcaca 1884

                                                                        
Query: 375  aatgtcttgacaaagaacggagacgacgaactgcctatattctgtgtagcagcaatcttg 434
            ||||| ||  ||||||| ||||| || || |||||||||||||| |||||||||||| | 
Sbjct: 1885 aatgtgttagcaaagaatggagatgatgatctgcctatattctgcgtagcagcaatcctt 1944

                                                                     
Query: 435  ataatcaatcggcacaagattattagagatactcactcaatagatgatgctatcaag 491
             |||||||||| |||||||| |||||||| |||| ||||||||||||||| ||||||
Sbjct: 1945 gtaatcaatcgccacaagataattagagaaactcgctcaatagatgatgcaatcaag 2001
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
            complete sequence
          Length = 43261740

 Score =  274 bits (138), Expect = 3e-70
 Identities = 342/410 (83%)
 Strand = Plus / Plus

                                                                        
Query: 82   agatgatgtgggctgctgattttgatgaagatgcaatcaggaatttggaagcgaactgcc 141
            ||||||||||||||||||| ||| |||||||||  ||     ||||||||| ||| || |
Sbjct: 8208 agatgatgtgggctgctgactttaatgaagatgtgattttacatttggaagagaattgtc 8267

                                                                        
Query: 142  tagaaccgttgctactagatgtgaagaatgatttgtcatgtgaggtcaaagaagagcccc 201
            | || || |||||  ||||| ||| ||||||||| ||||||||||| |||||||||| ||
Sbjct: 8268 tggagccattgctggtagatatgaggaatgatttatcatgtgaggtgaaagaagagcacc 8327

                                                                        
Query: 202  gagtgaacaagcacacgagaagaaaatccaaaagcaggagatcccatcgtagaaatggtg 261
            | |||||||   |||| |||||||| |||||||||||||   |||||| |||||||||||
Sbjct: 8328 gggtgaacagttacacaagaagaaagtccaaaagcaggaagccccatcatagaaatggtg 8387

                                                                        
Query: 262  aaatccgcgtttcttgcaaccccggagtgaaatctagtacaagaaatcccctgtgtggct 321
            |||| || ||  |||||||||  ||| ||||| | | ||||||||||||||| |||||||
Sbjct: 8388 aaatgcgtgtagcttgcaaccttggaatgaaacccaatacaagaaatcccctctgtggct 8447

                                                                        
Query: 322  tgtcaggtgctactatctgggcaaggcatcaacatatgcctcatttgagtacaaatgtct 381
            ||||||| |||||||| |||||||| ||||| || ||||| ||| | || |||||||| |
Sbjct: 8448 tgtcaggagctactatttgggcaagacatcagcagatgccacatataagcacaaatgtgt 8507

                                                                        
Query: 382  tgacaaagaacggagacgacgaactgcctatattctgtgtagcagcaatcttgataatca 441
            |  ||||||| ||||| || || |||||||||||||| |||||||||||| |  ||||||
Sbjct: 8508 tagcaaagaatggagatgatgatctgcctatattctgcgtagcagcaatccttgtaatca 8567

                                                              
Query: 442  atcggcacaagattattagagatactcactcaatagatgatgctatcaag 491
            |||| |||||||| |||||||| |||| ||||||||||||||| ||||||
Sbjct: 8568 atcgccacaagataattagagaaactcgctcaatagatgatgcaatcaag 8617



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 64/69 (92%)
 Strand = Plus / Plus

                                                                        
Query: 15   gctttccggatgctgctagtgctttttcgtcgagagctatcttttgaggagtcgttgagc 74
            |||||||||||||||||||||||||||||||||||||| || |||||||||||  | |||
Sbjct: 7540 gctttccggatgctgctagtgctttttcgtcgagagctgtcctttgaggagtcacttagc 7599

                     
Query: 75   atgtgggag 83
            |||||||||
Sbjct: 7600 atgtgggag 7608



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 67/76 (88%)
 Strand = Plus / Plus

                                                                        
Query: 490  agatgttcaacgacaatatactgaaaatcaatgtaaaaagatgtgtgcgcctggctgtca 549
            |||||||||| || ||||| ||||| ||||||||||||||||| || ||| ||||| |||
Sbjct: 9102 agatgttcaatgataatatgctgaagatcaatgtaaaaagatgcgtacgcatggctatca 9161

                            
Query: 550  ggctgaggaagaagta 565
             |||||||||||||||
Sbjct: 9162 agctgaggaagaagta 9177



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 37/38 (97%)
 Strand = Plus / Minus

                                                      
Query: 15       gctttccggatgctgctagtgctttttcgtcgagagct 52
                ||||||||||||||||||||||||||| ||||||||||
Sbjct: 43224400 gctttccggatgctgctagtgcttttttgtcgagagct 43224363



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 70/82 (85%), Gaps = 4/82 (4%)
 Strand = Plus / Minus

                                                                            
Query: 405      ctgcctatattctgtgtagcagcaatcttgataatcaatcggcacaagattattagagat 464
                ||||||||||| ||||| |||||||||||| |||  ||||| |||||||| ||| |||| 
Sbjct: 43222762 ctgcctatattatgtgtggcagcaatcttggtaa--aatcgccacaagataattcgagaa 43222705

                                      
Query: 465      act--cactcaatagatgatgc 484
                |||  | |||||||||||||||
Sbjct: 43222704 actcgcgctcaatagatgatgc 43222683



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 317      tggcttgtcaggtgctactatctgggca 344
                |||||||||||| |||||||| ||||||
Sbjct: 43222850 tggcttgtcaggagctactatttgggca 43222823
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>dbj|AP003727.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0672D08
          Length = 173729

 Score =  274 bits (138), Expect = 3e-70
 Identities = 342/410 (83%)
 Strand = Plus / Plus

                                                                        
Query: 82   agatgatgtgggctgctgattttgatgaagatgcaatcaggaatttggaagcgaactgcc 141
            ||||||||||||||||||| ||| |||||||||  ||     ||||||||| ||| || |
Sbjct: 6010 agatgatgtgggctgctgactttaatgaagatgtgattttacatttggaagagaattgtc 6069

                                                                        
Query: 142  tagaaccgttgctactagatgtgaagaatgatttgtcatgtgaggtcaaagaagagcccc 201
            | || || |||||  ||||| ||| ||||||||| ||||||||||| |||||||||| ||
Sbjct: 6070 tggagccattgctggtagatatgaggaatgatttatcatgtgaggtgaaagaagagcacc 6129

                                                                        
Query: 202  gagtgaacaagcacacgagaagaaaatccaaaagcaggagatcccatcgtagaaatggtg 261
            | |||||||   |||| |||||||| |||||||||||||   |||||| |||||||||||
Sbjct: 6130 gggtgaacagttacacaagaagaaagtccaaaagcaggaagccccatcatagaaatggtg 6189

                                                                        
Query: 262  aaatccgcgtttcttgcaaccccggagtgaaatctagtacaagaaatcccctgtgtggct 321
            |||| || ||  |||||||||  ||| ||||| | | ||||||||||||||| |||||||
Sbjct: 6190 aaatgcgtgtagcttgcaaccttggaatgaaacccaatacaagaaatcccctctgtggct 6249

                                                                        
Query: 322  tgtcaggtgctactatctgggcaaggcatcaacatatgcctcatttgagtacaaatgtct 381
            ||||||| |||||||| |||||||| ||||| || ||||| ||| | || |||||||| |
Sbjct: 6250 tgtcaggagctactatttgggcaagacatcagcagatgccacatataagcacaaatgtgt 6309

                                                                        
Query: 382  tgacaaagaacggagacgacgaactgcctatattctgtgtagcagcaatcttgataatca 441
            |  ||||||| ||||| || || |||||||||||||| |||||||||||| |  ||||||
Sbjct: 6310 tagcaaagaatggagatgatgatctgcctatattctgcgtagcagcaatccttgtaatca 6369

                                                              
Query: 442  atcggcacaagattattagagatactcactcaatagatgatgctatcaag 491
            |||| |||||||| |||||||| |||| ||||||||||||||| ||||||
Sbjct: 6370 atcgccacaagataattagagaaactcgctcaatagatgatgcaatcaag 6419



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 64/69 (92%)
 Strand = Plus / Plus

                                                                        
Query: 15   gctttccggatgctgctagtgctttttcgtcgagagctatcttttgaggagtcgttgagc 74
            |||||||||||||||||||||||||||||||||||||| || |||||||||||  | |||
Sbjct: 5342 gctttccggatgctgctagtgctttttcgtcgagagctgtcctttgaggagtcacttagc 5401

                     
Query: 75   atgtgggag 83
            |||||||||
Sbjct: 5402 atgtgggag 5410



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 67/76 (88%)
 Strand = Plus / Plus

                                                                        
Query: 490  agatgttcaacgacaatatactgaaaatcaatgtaaaaagatgtgtgcgcctggctgtca 549
            |||||||||| || ||||| ||||| ||||||||||||||||| || ||| ||||| |||
Sbjct: 6904 agatgttcaatgataatatgctgaagatcaatgtaaaaagatgcgtacgcatggctatca 6963

                            
Query: 550  ggctgaggaagaagta 565
             |||||||||||||||
Sbjct: 6964 agctgaggaagaagta 6979
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>dbj|AP008219.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
            fosmid clone:OSJNOa264G09
          Length = 31687

 Score =  274 bits (138), Expect = 3e-70
 Identities = 342/410 (83%)
 Strand = Plus / Plus

                                                                        
Query: 82   agatgatgtgggctgctgattttgatgaagatgcaatcaggaatttggaagcgaactgcc 141
            ||||||||||||||||||| ||| |||||||||  ||     ||||||||| ||| || |
Sbjct: 8208 agatgatgtgggctgctgactttaatgaagatgtgattttacatttggaagagaattgtc 8267

                                                                        
Query: 142  tagaaccgttgctactagatgtgaagaatgatttgtcatgtgaggtcaaagaagagcccc 201
            | || || |||||  ||||| ||| ||||||||| ||||||||||| |||||||||| ||
Sbjct: 8268 tggagccattgctggtagatatgaggaatgatttatcatgtgaggtgaaagaagagcacc 8327

                                                                        
Query: 202  gagtgaacaagcacacgagaagaaaatccaaaagcaggagatcccatcgtagaaatggtg 261
            | |||||||   |||| |||||||| |||||||||||||   |||||| |||||||||||
Sbjct: 8328 gggtgaacagttacacaagaagaaagtccaaaagcaggaagccccatcatagaaatggtg 8387

                                                                        
Query: 262  aaatccgcgtttcttgcaaccccggagtgaaatctagtacaagaaatcccctgtgtggct 321
            |||| || ||  |||||||||  ||| ||||| | | ||||||||||||||| |||||||
Sbjct: 8388 aaatgcgtgtagcttgcaaccttggaatgaaacccaatacaagaaatcccctctgtggct 8447

                                                                        
Query: 322  tgtcaggtgctactatctgggcaaggcatcaacatatgcctcatttgagtacaaatgtct 381
            ||||||| |||||||| |||||||| ||||| || ||||| ||| | || |||||||| |
Sbjct: 8448 tgtcaggagctactatttgggcaagacatcagcagatgccacatataagcacaaatgtgt 8507

                                                                        
Query: 382  tgacaaagaacggagacgacgaactgcctatattctgtgtagcagcaatcttgataatca 441
            |  ||||||| ||||| || || |||||||||||||| |||||||||||| |  ||||||
Sbjct: 8508 tagcaaagaatggagatgatgatctgcctatattctgcgtagcagcaatccttgtaatca 8567

                                                              
Query: 442  atcggcacaagattattagagatactcactcaatagatgatgctatcaag 491
            |||| |||||||| |||||||| |||| ||||||||||||||| ||||||
Sbjct: 8568 atcgccacaagataattagagaaactcgctcaatagatgatgcaatcaag 8617



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 64/69 (92%)
 Strand = Plus / Plus

                                                                        
Query: 15   gctttccggatgctgctagtgctttttcgtcgagagctatcttttgaggagtcgttgagc 74
            |||||||||||||||||||||||||||||||||||||| || |||||||||||  | |||
Sbjct: 7540 gctttccggatgctgctagtgctttttcgtcgagagctgtcctttgaggagtcacttagc 7599

                     
Query: 75   atgtgggag 83
            |||||||||
Sbjct: 7600 atgtgggag 7608



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 67/76 (88%)
 Strand = Plus / Plus

                                                                        
Query: 490  agatgttcaacgacaatatactgaaaatcaatgtaaaaagatgtgtgcgcctggctgtca 549
            |||||||||| || ||||| ||||| ||||||||||||||||| || ||| ||||| |||
Sbjct: 9102 agatgttcaatgataatatgctgaagatcaatgtaaaaagatgcgtacgcatggctatca 9161

                            
Query: 550  ggctgaggaagaagta 565
             |||||||||||||||
Sbjct: 9162 agctgaggaagaagta 9177
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>gb|AY110188.1| Zea mays CL40463_1 mRNA sequence
          Length = 971

 Score =  178 bits (90), Expect = 1e-41
 Identities = 309/382 (80%)
 Strand = Plus / Minus

                                                                       
Query: 118 tcaggaatttggaagcgaactgcctagaaccgttgctactagatgtgaagaatgatttgt 177
           ||||| |||| |||| ||||||||||||||| |||||| ||||| |||  ||||  || |
Sbjct: 968 tcaggcatttagaagagaactgcctagaaccattgctagtagatctgagcaatggcttat 909

                                                                       
Query: 178 catgtgaggtcaaagaagagccccgagtgaacaagcacacgagaagaaaatccaaaagca 237
           ||||||| |||||||||| ||  ||  | ||||    ||| ||||||||||||| || ||
Sbjct: 908 catgtgaagtcaaagaagtgcatcggatcaacagttccacaagaagaaaatccagaacca 849

                                                                       
Query: 238 ggagatcccatcgtagaaatggtgaaatccgcgtttcttgcaaccccggagtgaaatcta 297
           ||| || |||| ||||||||||||||||| | |   ||||| || | ||| |||||||||
Sbjct: 848 ggaaatgccatagtagaaatggtgaaatctgtggagcttgccactctggaatgaaatcta 789

                                                                       
Query: 298 gtacaagaaatcccctgtgtggcttgtcaggtgctactatctgggcaaggcatcaacata 357
           ||||||||||||  || |||||||||||||||||||| || |||||||| | ||| || |
Sbjct: 788 gtacaagaaatcatctctgtggcttgtcaggtgctacaatatgggcaagacctcagcaga 729

                                                                       
Query: 358 tgcctcatttgagtacaaatgtcttgacaaagaacggagacgacgaactgcctatattct 417
           |||| |||   ||| ||| |||  |  |||||   |||||  | ||||||||||||||||
Sbjct: 728 tgccacatccaagtgcaagtgtgctagcaaagggtggagattatgaactgcctatattct 669

                                                                       
Query: 418 gtgtagcagcaatcttgataatcaatcggcacaagattattagagatactcactcaatag 477
           |||| || |||||||||||||| || || || ||||| || ||||  |||||||||||||
Sbjct: 668 gtgtggcggcaatcttgataattaaccgccagaagataataagagggactcactcaatag 609

                                 
Query: 478 atgatgctatcaagatgttcaa 499
           ||||||| ||||||||||||||
Sbjct: 608 atgatgcgatcaagatgttcaa 587
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>ref|NM_115819.2| Arabidopsis thaliana unknown protein AT3G59570 mRNA, complete cds
          Length = 2631

 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 79/92 (85%)
 Strand = Plus / Plus

                                                                        
Query: 18   ttccggatgctgctagtgctttttcgtcgagagctatcttttgaggagtcgttgagcatg 77
            |||||||||||| ||||| | ||||| |||||| | |||||| |  || |  |||| |||
Sbjct: 1717 ttccggatgctgttagtgttgtttcgacgagagttgtcttttaacaaggctctgaggatg 1776

                                            
Query: 78   tgggagatgatgtgggctgctgattttgatga 109
            ||||||||||||||||||||||||||||||||
Sbjct: 1777 tgggagatgatgtgggctgctgattttgatga 1808
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>dbj|AP003228.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0020E09
          Length = 149195

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 37/38 (97%)
 Strand = Plus / Minus

                                                    
Query: 15     gctttccggatgctgctagtgctttttcgtcgagagct 52
              ||||||||||||||||||||||||||| ||||||||||
Sbjct: 111855 gctttccggatgctgctagtgcttttttgtcgagagct 111818



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 70/82 (85%), Gaps = 4/82 (4%)
 Strand = Plus / Minus

                                                                          
Query: 405    ctgcctatattctgtgtagcagcaatcttgataatcaatcggcacaagattattagagat 464
              ||||||||||| ||||| |||||||||||| |||  ||||| |||||||| ||| |||| 
Sbjct: 110217 ctgcctatattatgtgtggcagcaatcttggtaa--aatcgccacaagataattcgagaa 110160

                                    
Query: 465    act--cactcaatagatgatgc 484
              |||  | |||||||||||||||
Sbjct: 110159 actcgcgctcaatagatgatgc 110138



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 317    tggcttgtcaggtgctactatctgggca 344
              |||||||||||| |||||||| ||||||
Sbjct: 110305 tggcttgtcaggagctactatttgggca 110278
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>ref|NM_129910.1| Arabidopsis thaliana unknown protein AT2G43490 mRNA, complete cds
          Length = 2271

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                
Query: 75   atgtgggagatgatgtgggctgctgattttgatgaa 110
            |||||||||||||||||||| ||||||| |||||||
Sbjct: 1492 atgtgggagatgatgtgggcagctgattatgatgaa 1527
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>gb|AY429356.1| Arabidopsis thaliana At2g43490 mRNA, partial sequence,
           alternatively spliced
          Length = 1810

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                               
Query: 75  atgtgggagatgatgtgggctgctgattttgatgaa 110
           |||||||||||||||||||| ||||||| |||||||
Sbjct: 562 atgtgggagatgatgtgggcagctgattatgatgaa 597
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>gb|AY429355.1| Arabidopsis thaliana At2g43490 mRNA, partial sequence
          Length = 1816

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                               
Query: 75  atgtgggagatgatgtgggctgctgattttgatgaa 110
           |||||||||||||||||||| ||||||| |||||||
Sbjct: 562 atgtgggagatgatgtgggcagctgattatgatgaa 597
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>emb|AL138659.1|ATT16L24 Arabidopsis thaliana DNA chromosome 3, BAC clone T16L24
          Length = 91851

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                         
Query: 82    agatgatgtgggctgctgattttgatga 109
             ||||||||||||||||||||||||||||
Sbjct: 25003 agatgatgtgggctgctgattttgatga 24976
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>gb|BT013152.1| Lycopersicon esculentum clone 134156F, mRNA sequence
          Length = 1035

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 93  gctgctgattttgatgaagatg 114
           ||||||||||||||||||||||
Sbjct: 548 gctgctgattttgatgaagatg 569
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>gb|AC093608.3| Homo sapiens BAC clone RP11-700C8 from 4, complete sequence
          Length = 162015

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 506    tatactgaaaatcaatgtaaaa 527
              ||||||||||||||||||||||
Sbjct: 134572 tatactgaaaatcaatgtaaaa 134551
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>gb|U80440.2| Caenorhabditis elegans cosmid T21E12, complete sequence
          Length = 36120

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 93   gctgctgattttgatgaagat 113
            |||||||||||||||||||||
Sbjct: 9814 gctgctgattttgatgaagat 9834
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>gb|DQ160197.1| Homo sapiens RAD51-like 1 (S. cerevisiae) (RAD51L1) gene, complete cds
          Length = 660392

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 221    aagaaaatccaaaagcaggag 241
              |||||||||||||||||||||
Sbjct: 114430 aagaaaatccaaaagcaggag 114410
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>dbj|BA000032.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromosome 2, complete sequence
          Length = 1877212

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 218     gagaagaaaatccaaaagcaggaga 242
               |||||||||||||| ||||||||||
Sbjct: 1674807 gagaagaaaatccagaagcaggaga 1674831
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>gb|AC135316.15| Medicago truncatula clone mth2-20l8, complete sequence
          Length = 127653

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 550   ggctgaggaagaagtaccagt 570
             |||||||||||||||||||||
Sbjct: 71721 ggctgaggaagaagtaccagt 71701
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>gb|AC002335.3| Arabidopsis thaliana chromosome 2 clone T1O24 map CIC10F02, complete
             sequence
          Length = 102057

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 82    agatgatgtgggctgctgattttgatgaa 110
             ||||||||||||| ||||||| |||||||
Sbjct: 70909 agatgatgtgggcagctgattatgatgaa 70881
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>emb|BX530089.9| Zebrafish DNA sequence from clone CH211-129M12 in linkage group 3,
             complete sequence
          Length = 176077

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 185   ggtcaaagaagagccccgagtgaac 209
             ||||||| |||||||||||||||||
Sbjct: 87728 ggtcaaaaaagagccccgagtgaac 87704
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>ref|NM_058962.2| Caenorhabditis elegans Dynein Heavy Chain family member (dhc-1)
            (dhc-1) mRNA, complete cds
          Length = 13932

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 93   gctgctgattttgatgaagat 113
            |||||||||||||||||||||
Sbjct: 8734 gctgctgattttgatgaagat 8754
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>emb|AL121595.5|CNS01DRZ Human chromosome 14 DNA sequence BAC C-3225F7 of library CalTech-D from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 171535

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 221   aagaaaatccaaaagcaggag 241
             |||||||||||||||||||||
Sbjct: 44871 aagaaaatccaaaagcaggag 44891
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>gb|L33260.1|CELDYNEINH Caenorhabditis elegans dynein heavy chain gene exons 1-15, complete cds
          Length = 35103

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 93    gctgctgattttgatgaagat 113
             |||||||||||||||||||||
Sbjct: 13866 gctgctgattttgatgaagat 13886
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>dbj|AP004940.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT48I11, TM0106,
             complete sequence
          Length = 103636

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 82    agatgatgtgggctgctgattttgatgaa 110
             ||||||||||||| ||||| |||||||||
Sbjct: 47713 agatgatgtgggcagctgactttgatgaa 47685



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                     
Query: 490   agatgttcaacgacaatatactgaaaatcaatgtaaaaag 529
             |||||||||| ||||| ||  |||| ||||||||||||||
Sbjct: 45947 agatgttcaatgacaagatgttgaagatcaatgtaaaaag 45908
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>gb|AC164649.4| Mus musculus BAC clone RP23-437D10 from chromosome 5, complete sequence
          Length = 215766

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 513    aaaatcaatgtaaaaagatg 532
              ||||||||||||||||||||
Sbjct: 101201 aaaatcaatgtaaaaagatg 101182
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>gb|AC146084.2| Pan troglodytes BAC clone RP43-56L21 from 7, complete sequence
          Length = 152170

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 219    agaagaaaatccaaaagcaggaga 242
              ||||||||||||||||| ||||||
Sbjct: 131256 agaagaaaatccaaaagaaggaga 131279
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>gb|AC140042.19| Mus musculus chromosome 5, clone RP23-437D10, complete sequence
          Length = 215786

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 513    aaaatcaatgtaaaaagatg 532
              ||||||||||||||||||||
Sbjct: 114567 aaaatcaatgtaaaaagatg 114586
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>gb|AC093483.6| Mus musculus chromosome 9, clone RP23-79K5, complete sequence
          Length = 262048

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 371    tacaaatgtcttgacaaaga 390
              ||||||||||||||||||||
Sbjct: 149716 tacaaatgtcttgacaaaga 149735
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>emb|AL365202.19| Human DNA sequence from clone RP11-326A8 on chromosome 9 Contains the
             5' end of the RFX3 gene for regulatory factor X, 3
             (influences HLA class II expression), the 5' end of a
             novel gene and a CpG island, complete sequence
          Length = 177164

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 505   atatactgaaaatcaatgtaaaaa 528
             ||||| ||||||||||||||||||
Sbjct: 36257 atataatgaaaatcaatgtaaaaa 36234
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>emb|AL049612.11|HSJ182D15 Human DNA sequence from clone RP1-182D15 on chromosome 6q26-27 Contains
             the 3' end of the gene for hypothetical protein FLJ13162
             and a novel gene, complete sequence
          Length = 79576

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 309   cccctgtgtggcttgtcagg 328
             ||||||||||||||||||||
Sbjct: 25933 cccctgtgtggcttgtcagg 25914
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>gb|AC105755.4| Homo sapiens BAC clone RP11-46H14 from 4, complete sequence
          Length = 145673

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 505   atatactgaaaatcaatgta 524
             ||||||||||||||||||||
Sbjct: 88843 atatactgaaaatcaatgta 88824
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 66      tcgttgagcatgtgggagatgatg 89
               ||||||||| ||||||||||||||
Sbjct: 6974229 tcgttgagcttgtgggagatgatg 6974252
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>gb|AC051643.5| Homo sapiens chromosome 15, clone RP11-615L8, complete sequence
          Length = 158682

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 336   atctgggcaaggcatcaaca 355
             ||||||||||||||||||||
Sbjct: 46068 atctgggcaaggcatcaaca 46049
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>emb|AL109985.5|CNS018P2 Human chromosome 14 DNA sequence BAC R-370E23 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 186548

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 511    tgaaaatcaatgtaaaaaga 530
              ||||||||||||||||||||
Sbjct: 128331 tgaaaatcaatgtaaaaaga 128350
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>dbj|AP003087.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-594014, complete
             sequences
          Length = 100403

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 504   aatatactgaaaatcaatgtaaaa 527
             |||||||||||||||||| |||||
Sbjct: 94602 aatatactgaaaatcaatctaaaa 94625


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,099,672
Number of Sequences: 3902068
Number of extensions: 5099672
Number of successful extensions: 98458
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 98291
Number of HSP's gapped (non-prelim): 163
length of query: 579
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 556
effective length of database: 17,143,297,704
effective search space: 9531673523424
effective search space used: 9531673523424
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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